AT4G28980
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
14288379 .. 14290913
2535 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28980.3

Sequence Viewer

Length: 1440 bp
ATGGATAAACAACCGGCGACCAGTTGGAGTATCCATACCCGGCCGGAGATAATCGCCAAGTACGAGATCTTCGAGCGAGTCGGATCCGGAGCTTACGCCGACGTTTACAGAGCTCGCCGTCTCTCCGACGGTCTAATCGTCGCGCTCAAGGAGATTTTCGATTACCAATCTGCGTTCCGGGAGATTGACGCGCTCACCATCCTCAATGGATCTCCTAATGTAGTTGTTATGCACGAATACTTCTGGCGTGAGGAAGAGAACGCTGTGCTTGTGCTTGAGTTTCTTAGGTCGGATCTCGCTGCGGTGATCCGAGATGGTAAGAGGAAGAAGAAGGTAGAAGGAGGGGATGGATTCTCGGTTGGGGAGATTAAGAGATGGATGATTCAGATTTTAACCGGTGTTGATGCTTGTCATCGGAATTTGATTGTACATAGAGATTTGAAGCCTGGGAATATGTTGATTTCTGATGATGGAGTTCTTAAGCTTGCTGATTTTGGTCAGGCTAGGATACTCATGGAGCATGATATTGTAGCTTCAGATGAAAACCAACAAGCTTACAAACTGGAAGACAAAGATGGAGAAACCAGCGAACCACCAGAAGTTATTCCTGATTATGAGAACTCACCTAGGCAAGGGTCTGATGGTCAGGAACGGGAAGCGATGAGTAAAGACGAGTACTTCCGACAGGTGGAAGAGCTCAAGGCTAAACAGGTTGTTAGAGATGATACTGATAAGGACTCGAATGTGCATGATGGAGACATATCTTGCCTTGCAACGTGCACTGTTAGTGAAATGGATGATGATCTCGGTAGGAACTCGTTTTCTTACGATGCTGACGAAGCAGTGGATGATACACAGGGTTTGATGACATCTTGTGTGGGAACCCGATGGTTTAGGCCACCAGAACTGCTCTATGGATCTACGATGTATGGGTTAGAGGTCGATCTATGGTCGCTTGGTTGTGTGTTTGCAGAACTCTTGTCTCTTGAGCCTTTGTTCCCAGGAATTTCAGATATTGATCAGATCAGCAGAGTGACCAATGTGCTGGGAAATTTAAATGAAGAGGTCTGGCCTGGTTGTGTTGATCTTCCAGACTACAAGTCAATCTCATTTGCTAAAGTAGAATCTCCTCTTGGTATTGAAGGATGCCTTCCCAACCATTCAGGGGATGTGATATCGCTGCTCAAGAAGCTTATCTGTTATGATCCAGCTAGTAGAGCTACTACTATGGAGATGCTGAATGACAAATATTTAAGTGAAGAGCCTCTTCCAGTTCCAGTTTCAGAGCTCTATGTGCCTCCGACAATGAGTGGACCAGATGAGGATTCTCCGAGAAAGTGGAATGATTACAGAGAAATGGATTCAGATTCAGATTTTGATGGCTTTGGACCCATGAATGTAAAGCCTACCAGTAGTGGATTTACAATAGAATTCCCCTGA

Protein Analysis

479

Amino Acids

53.75

Weight (kDa)

4.45

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 21 - 174 1e-29 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 24 - 183 1.1e-13 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 286 - 418 5.9e-19 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 143, 191
AccIII TCCGGA 1 cut(s) 86
AciI CCGC 1 cut(s) 302
AclWI GGATC 7 cut(s) 78, 91, 217, 300, 301, 925, 1199
AcoI YGGCCR 1 cut(s) 41
AcsI RAATTY 4 cut(s) 418, 1005, 1051, 1430
AcuI CTGAAG 1 cut(s) 519
AfaI GTAC 3 cut(s) 62, 429, 677
AfiI CCNNNNNNNGG 3 cut(s) 632, 688, 1165
AflII CTTAAG 1 cut(s) 479
AgeI ACCGGT 1 cut(s) 395
AgsI TTSAA 2 cut(s) 442, 1142
AhdI GACNNNNNGTC 1 cut(s) 1099
AjnI CCWGG 3 cut(s) 445, 1000, 1072
AjuI GAANNNNNNNTTGG 2 cut(s) 1116, 1148
Alw21I GWGCWC 4 cut(s) 115, 699, 782, 1290
Alw26I GTCTC 3 cut(s) 125, 750, 987
Alw44I GTGCAC 1 cut(s) 778
AlwI GGATC 7 cut(s) 78, 91, 217, 300, 301, 925, 1199
Aor13HI TCCGGA 1 cut(s) 86
AoxI GGCC 3 cut(s) 41, 896, 1070
ApaLI GTGCAC 1 cut(s) 778
ApeKI GCWGC 2 cut(s) 299, 1180
ApoI RAATTY 4 cut(s) 418, 1005, 1051, 1430
AsiGI ACCGGT 1 cut(s) 395
Asp700I GAANNNNTTC 1 cut(s) 603
AspA2I CCTAGG 1 cut(s) 626
AspLEI GCGC 2 cut(s) 145, 193
AspS9I GGNCC 2 cut(s) 1313, 1388
AsuC2I CCSGG 2 cut(s) 40, 179
AsuHPI GGTGA 3 cut(s) 187, 316, 615
AvaII GGWCC 2 cut(s) 1313, 1388
AvrII CCTAGG 1 cut(s) 626
BaeGI GKGCMC 1 cut(s) 782
BamHI GGATCC 1 cut(s) 83
BanII GRGCYC 3 cut(s) 115, 699, 1290
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
BbsI GAAGAC 1 cut(s) 573
Bbv12I GWGCWC 4 cut(s) 115, 699, 782, 1290
BbvI GCAGC 2 cut(s) 286, 1167
BceAI ACGGC 1 cut(s) 102
BciT130I CCWGG 3 cut(s) 447, 1002, 1074
BciVI GTATCC 2 cut(s) 41, 501
BclI TGATCA 1 cut(s) 1018
BcnI CCSGG 2 cut(s) 40, 179
BcoDI GTCTC 3 cut(s) 125, 750, 987
BfaI CTAG 3 cut(s) 504, 627, 1212
BfrI CTTAAG 1 cut(s) 479
BfuI GTATCC 2 cut(s) 41, 501
BglII AGATCT 1 cut(s) 66
BisI GCNGC 2 cut(s) 300, 1181
BlnI CCTAGG 1 cut(s) 626
BlsI GCNGC 2 cut(s) 301, 1182
BmcAI AGTACT 1 cut(s) 677
Bme1390I CCNGG 5 cut(s) 40, 179, 447, 1002, 1074
Bme18I GGWCC 2 cut(s) 1313, 1388
BmeRI GACNNNNNGTC 1 cut(s) 1099
BmgT120I GGNCC 2 cut(s) 1313, 1388
BmiI GGNNCC 3 cut(s) 85, 883, 1390
BmrFI CCNGG 5 cut(s) 40, 179, 447, 1002, 1074
BmsI GCATC 4 cut(s) 394, 820, 1136, 1224
BpiI GAAGAC 1 cut(s) 573
BpuEI CTTGAG 5 cut(s) 131, 296, 683, 1007, 1169
BpuMI CCSGG 2 cut(s) 40, 179
BsaBI GATNNNNATC 2 cut(s) 801, 1017
BsaJI CCNNGG 3 cut(s) 446, 626, 1000
BsaWI WCCGGW 2 cut(s) 86, 395
Bsc4I CCNNNNNNNGG 3 cut(s) 632, 688, 1165
Bse118I RCCGGY 2 cut(s) 13, 395
Bse1I ACTGG 5 cut(s) 21, 567, 1271, 1277, 1410
Bse8I GATNNNNATC 2 cut(s) 801, 1017
BseAI TCCGGA 1 cut(s) 86
BseBI CCWGG 3 cut(s) 447, 1002, 1074
BseDI CCNNGG 3 cut(s) 446, 626, 1000
BseGI GGATG 7 cut(s) 198, 352, 384, 802, 853, 1151, 1174
BseJI GATNNNNATC 2 cut(s) 801, 1017
BseLI CCNNNNNNNGG 3 cut(s) 632, 688, 1165
BseNI ACTGG 5 cut(s) 21, 567, 1271, 1277, 1410
BseRI GAGGAG 1 cut(s) 1119
BseSI GKGCMC 1 cut(s) 782
BseX3I CGGCCG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 286, 1167
BseYI CCCAGC 1 cut(s) 1045
Bsh1236I CGCG 2 cut(s) 143, 191
Bsh1285I CGRYCG 1 cut(s) 44
BshFI GGCC 3 cut(s) 43, 898, 1072
BshTI ACCGGT 1 cut(s) 395
BsiEI CGRYCG 1 cut(s) 44
BsiHKAI GWGCWC 4 cut(s) 115, 699, 782, 1290
BsiSI CCGG 6 cut(s) 14, 40, 44, 87, 178, 396
BslI CCNNNNNNNGG 3 cut(s) 632, 688, 1165
BsmAI GTCTC 3 cut(s) 125, 750, 987
BsmBI CGTCTC 1 cut(s) 125
BsnI GGCC 3 cut(s) 43, 898, 1072
Bsp1286I GDGCHC 4 cut(s) 115, 699, 782, 1290
Bsp13I TCCGGA 1 cut(s) 86
Bsp1407I TGTACA 1 cut(s) 427
BspACI CCGC 1 cut(s) 302
BspANI GGCC 3 cut(s) 43, 898, 1072
BspEI TCCGGA 1 cut(s) 86
BspFNI CGCG 2 cut(s) 143, 191
BspLI GGNNCC 3 cut(s) 85, 883, 1390
BspPI GGATC 7 cut(s) 78, 91, 217, 300, 301, 925, 1199
BspQI GCTCTTC 2 cut(s) 687, 1254
BspTI CTTAAG 1 cut(s) 479
BsrFI RCCGGY 2 cut(s) 13, 395
BsrGI TGTACA 1 cut(s) 427
BsrI ACTGG 5 cut(s) 21, 567, 1271, 1277, 1410
BssAI RCCGGY 2 cut(s) 13, 395
BssECI CCNNGG 3 cut(s) 446, 626, 1000
BssT1I CCWWGG 1 cut(s) 626
Bst2UI CCWGG 3 cut(s) 447, 1002, 1074
Bst4CI ACNGT 2 cut(s) 131, 784
Bst6I CTCTTC 5 cut(s) 249, 687, 1056, 1254, 1272
BstAFI CTTAAG 1 cut(s) 479
BstAUI TGTACA 1 cut(s) 427
BstC8I GCNNGC 2 cut(s) 115, 486
BstDEI CTNAG 1 cut(s) 284
BstENI CCTNNNNNAGG 1 cut(s) 630
BstF5I GGATG 7 cut(s) 198, 352, 384, 802, 853, 1151, 1174
BstFNI CGCG 2 cut(s) 143, 191
BstHHI GCGC 2 cut(s) 145, 193
BstMAI GTCTC 3 cut(s) 125, 750, 987
BstMCI CGRYCG 1 cut(s) 44
BstMWI GCNNNNNNNGC 4 cut(s) 839, 1189, 1217, 1294
BstNI CCWGG 3 cut(s) 447, 1002, 1074
BstSCI CCNGG 5 cut(s) 38, 177, 445, 1000, 1072
BstSLI GKGCMC 1 cut(s) 782
BstUI CGCG 2 cut(s) 143, 191
BstV1I GCAGC 2 cut(s) 286, 1167
BstV2I GAAGAC 1 cut(s) 573
BstX2I RGATCY 5 cut(s) 66, 83, 209, 292, 917
BstXI CCANNNNNNTGG 1 cut(s) 1045
BstYI RGATCY 5 cut(s) 66, 83, 209, 292, 917
BstZI CGGCCG 1 cut(s) 41
BsuI GTATCC 2 cut(s) 41, 501
BsuRI GGCC 3 cut(s) 43, 898, 1072
BtgZI GCGATG 1 cut(s) 674
BtsCI GGATG 7 cut(s) 198, 352, 384, 802, 853, 1151, 1174
BtsI GCAGTG 1 cut(s) 849
BtsIMutI CAGTG 2 cut(s) 780, 849
Cac8I GCNNGC 2 cut(s) 115, 486
CfoI GCGC 2 cut(s) 145, 193
Cfr10I RCCGGY 2 cut(s) 13, 395
Cfr13I GGNCC 2 cut(s) 1313, 1388
CseI GACGC 1 cut(s) 197
Csp6I GTAC 3 cut(s) 61, 428, 676
CspAI ACCGGT 1 cut(s) 395
CviAII CATG 4 cut(s) 514, 521, 749, 1393
CviQI GTAC 3 cut(s) 61, 428, 676
DdeI CTNAG 1 cut(s) 284
DraI TTTAAA 1 cut(s) 1056
DriI GACNNNNNGTC 1 cut(s) 1099
EaeI YGGCCR 1 cut(s) 41
EagI CGGCCG 1 cut(s) 41
Eam1104I CTCTTC 5 cut(s) 249, 687, 1056, 1254, 1272
Eam1105I GACNNNNNGTC 1 cut(s) 1099
EarI CTCTTC 5 cut(s) 249, 687, 1056, 1254, 1272
Ecl136II GAGCTC 3 cut(s) 113, 697, 1288
EclXI CGGCCG 1 cut(s) 41
Eco130I CCWWGG 1 cut(s) 626
Eco24I GRGCYC 3 cut(s) 115, 699, 1290
Eco32I GATATC 1 cut(s) 1176
Eco47I GGWCC 2 cut(s) 1313, 1388
Eco52I CGGCCG 1 cut(s) 41
Eco53kI GAGCTC 3 cut(s) 113, 697, 1288
Eco57I CTGAAG 1 cut(s) 519
EcoICRI GAGCTC 3 cut(s) 113, 697, 1288
EcoNI CCTNNNNNAGG 1 cut(s) 630
EcoRI GAATTC 1 cut(s) 1430
EcoRII CCWGG 3 cut(s) 445, 1000, 1072
EcoRV GATATC 1 cut(s) 1176
EcoT14I CCWWGG 1 cut(s) 626
EcoT38I GRGCYC 3 cut(s) 115, 699, 1290
ErhI CCWWGG 1 cut(s) 626
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 4 cut(s) 517, 524, 752, 1396
FalI AAGNNNNNCTT 4 cut(s) 1134, 1166, 1251, 1283
FatI CATG 4 cut(s) 513, 520, 748, 1392
FbaI TGATCA 1 cut(s) 1018
Fnu4HI GCNGC 2 cut(s) 300, 1181
FokI GGATG 7 cut(s) 185, 359, 391, 809, 860, 1158, 1181
FriOI GRGCYC 3 cut(s) 115, 699, 1290
Fsp4HI GCNGC 2 cut(s) 300, 1181
FspBI CTAG 3 cut(s) 504, 627, 1212
GlaI GCGC 2 cut(s) 144, 192
GluI GCNGC 2 cut(s) 300, 1181
GsaI CCCAGC 1 cut(s) 1049
HaeIII GGCC 3 cut(s) 43, 898, 1072
HapII CCGG 6 cut(s) 14, 40, 44, 87, 178, 396
HgaI GACGC 1 cut(s) 197
HhaI GCGC 2 cut(s) 145, 193
Hin1II CATG 4 cut(s) 517, 524, 752, 1396
Hin6I GCGC 2 cut(s) 143, 191
HinP1I GCGC 2 cut(s) 143, 191
HindIII AAGCTT 3 cut(s) 482, 552, 1190
HinfI GANTC 8 cut(s) 78, 351, 382, 737, 1124, 1325, 1361, 1367
HpaII CCGG 6 cut(s) 14, 40, 44, 87, 178, 396
HphI GGTGA 3 cut(s) 187, 316, 615
Hpy166II GTNNAC 3 cut(s) 106, 780, 1313
Hpy188III TCNNGA 6 cut(s) 87, 608, 647, 986, 1091, 1186
Hpy8I GTNNAC 3 cut(s) 106, 780, 1313
Hpy99I CGWCG 3 cut(s) 104, 131, 143
HpyAV CCTTC 4 cut(s) 325, 332, 1136, 1160
HpyCH4III ACNGT 2 cut(s) 131, 784
HpyCH4IV ACGT 2 cut(s) 102, 776
HpyCH4V TGCA 5 cut(s) 232, 748, 773, 780, 971
HpyF10VI GCNNNNNNNGC 4 cut(s) 839, 1189, 1217, 1294
HpyF3I CTNAG 1 cut(s) 284
HpySE526I ACGT 2 cut(s) 102, 776
Hsp92II CATG 4 cut(s) 517, 524, 752, 1396
HspAI GCGC 2 cut(s) 143, 191
Kpn2I TCCGGA 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 1018
LguI GCTCTTC 2 cut(s) 687, 1254
LmnI GCTCC 2 cut(s) 89, 517
Lsp1109I GCAGC 2 cut(s) 286, 1167
LweI GCATC 4 cut(s) 394, 820, 1136, 1224
MaeI CTAG 3 cut(s) 504, 627, 1212
MaeII ACGT 2 cut(s) 102, 776
MaeIII GTNAC 1 cut(s) 1033
MflI RGATCY 5 cut(s) 66, 83, 209, 292, 917
MhlI GDGCHC 4 cut(s) 115, 699, 782, 1290
MluCI AATT 4 cut(s) 418, 1005, 1051, 1430
MlyI GAGTC 2 cut(s) 87, 731
MmeI TCCRAC 6 cut(s) 5, 61, 150, 270, 706, 1325
MroI TCCGGA 1 cut(s) 86
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 5 cut(s) 369, 392, 480, 1055, 1253
MspCI CTTAAG 1 cut(s) 479
MspI CCGG 6 cut(s) 14, 40, 44, 87, 178, 396
MspR9I CCNGG 5 cut(s) 40, 179, 447, 1002, 1074
MvaI CCWGG 3 cut(s) 447, 1002, 1074
MvnI CGCG 2 cut(s) 143, 191
MwoI GCNNNNNNNGC 4 cut(s) 839, 1189, 1217, 1294
NciI CCSGG 2 cut(s) 40, 179
NlaIII CATG 4 cut(s) 517, 524, 752, 1396
NlaIV GGNNCC 3 cut(s) 85, 883, 1390
NmuCI GTSAC 1 cut(s) 1033
PciSI GCTCTTC 2 cut(s) 687, 1254
PcsI WCGNNNNNNNCGW 4 cut(s) 60, 69, 135, 834
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 6 cut(s) 351, 382, 1124, 1325, 1361, 1367
PfoI TCCNGGA 1 cut(s) 177
PinAI ACCGGT 1 cut(s) 395
PkrI GCNGC 2 cut(s) 301, 1182
PleI GAGTC 2 cut(s) 86, 731
PpsI GAGTC 2 cut(s) 86, 731
Psp124BI GAGCTC 3 cut(s) 115, 699, 1290
Psp6I CCWGG 3 cut(s) 445, 1000, 1072
PspFI CCCAGC 1 cut(s) 1045
PspGI CCWGG 3 cut(s) 445, 1000, 1072
PspN4I GGNNCC 3 cut(s) 85, 883, 1390
PspPI GGNCC 2 cut(s) 1313, 1388
PsuI RGATCY 5 cut(s) 66, 83, 209, 292, 917
RsaI GTAC 3 cut(s) 62, 429, 677
RsaNI GTAC 3 cut(s) 61, 428, 676
SacI GAGCTC 3 cut(s) 115, 699, 1290
SapI GCTCTTC 2 cut(s) 687, 1254
SaqAI TTAA 5 cut(s) 369, 392, 480, 1055, 1253
SatI GCNGC 2 cut(s) 300, 1181
Sau96I GGNCC 2 cut(s) 1313, 1388
ScaI AGTACT 1 cut(s) 677
SchI GAGTC 2 cut(s) 87, 731
ScrFI CCNGG 5 cut(s) 40, 179, 447, 1002, 1074
SduI GDGCHC 4 cut(s) 115, 699, 782, 1290
SfaNI GCATC 4 cut(s) 394, 820, 1136, 1224
SinI GGWCC 2 cut(s) 1313, 1388
SmiI ATTTAAAT 1 cut(s) 1056
SmlI CTYRAG 6 cut(s) 146, 275, 479, 698, 986, 1184
SmoI CTYRAG 6 cut(s) 146, 275, 479, 698, 986, 1184
Sse9I AATT 4 cut(s) 418, 1005, 1051, 1430
SsiI CCGC 1 cut(s) 302
SspI AATATT 1 cut(s) 1250
SspMI CTAG 3 cut(s) 504, 627, 1212
SstI GAGCTC 3 cut(s) 115, 699, 1290
StyD4I CCNGG 5 cut(s) 38, 177, 445, 1000, 1072
StyI CCWWGG 1 cut(s) 626
SwaI ATTTAAAT 1 cut(s) 1056
TaaI ACNGT 2 cut(s) 131, 784
TaiI ACGT 2 cut(s) 105, 779
TaqI TCGA 4 cut(s) 72, 159, 740, 942
TasI AATT 4 cut(s) 418, 1005, 1051, 1430
TatI WGTACW 2 cut(s) 427, 675
TfiI GAWTC 6 cut(s) 351, 382, 1124, 1325, 1361, 1367
Tru1I TTAA 5 cut(s) 369, 392, 480, 1055, 1253
Tru9I TTAA 5 cut(s) 369, 392, 480, 1055, 1253
TscAI CASTG 2 cut(s) 787, 849
TseFI GTSAC 1 cut(s) 1033
TseI GCWGC 2 cut(s) 299, 1180
Tsp45I GTSAC 1 cut(s) 1033
TspDTI ATGAA 3 cut(s) 555, 1074, 1409
TspRI CASTG 2 cut(s) 787, 849
Vha464I CTTAAG 1 cut(s) 479
VneI GTGCAC 1 cut(s) 778
VpaK11BI GGWCC 2 cut(s) 1313, 1388
XagI CCTNNNNNAGG 1 cut(s) 630
XapI RAATTY 4 cut(s) 418, 1005, 1051, 1430
XmaJI CCTAGG 1 cut(s) 626
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 3 cut(s) 504, 627, 1212
ZrmI AGTACT 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.