Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006246

Physical Location & Seq

Genomic Coordinates Forward (+)

2834014 .. 2834298

Gene Structure 285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGACTCTCCACCAGCGAAGAGCTGGAGCATCCACAGCCGACCCGAAATCATCGCAAAGTACAAGATCGTGGAGCGGGTCGATCCGGAGCCTACTCCGATGTCTACAGAGCCATCCGCCTCTCCGACAACCTCACCGTCGCGCTCAAGGAGGTCCACGACTACCAGTCGGCGTTCCGAGAAATCGAGGCCCTCCAGGCCCTCCAAAACTGCCCCAACGTCATCGTTTTGTACGAGTACTTTTGGCGCGAGGACGAGGACGCCGTGCTCGTCCTCGAATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008047 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009893 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019827 GO:0019887 GO:0019912 GO:0022622 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0097472 GO:0098727 GO:0098772 GO:0099402 GO:0140096 GO:1901564 GO:1904029 GO:1904031 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

95

Amino Acids

10.26

Weight (kDa)

10.86

Isoelectric Point (pI)

109.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28980 AT4G28980 AT4G28980
fragaria_vesca	FvH4_1g05460
malus_domestica	MD02G1062700.v1.1 MD15G1190500.v1.1
prunus_persica	Prupe.7G226600_v2.0.a1
pyrus_communis	pycom02g04310 pycom02g04320 pycom15g17070
rosa_chinensis	RchiOBHm_Chr2g0091141
rosa_laevigata	RLG00000006226 RLG00000014960 RLG00000016185
rosa_multiflora	Rmu_co8390673.1_g000001 Rmu_sc0002343.1_g000049 Rmu_sc0004851.1_g000011
rosa_roxburghii	Rroxscaffold_2G00150500 Rroxscaffold_5G00373520 Rroxscaffold_6G00397830 Rroxscaffold_7G00210230
rosa_rugosa	Rorug02G0013600
rosa_samantha	Rh2AG059600 Rh2BG058300 Rh2CG060100 Rh2DG058900
rosa_wichuraiana	Rw2G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	76
AccI	GTMKAC	1 cut(s)	104
AccII	CGCG	2 cut(s)	142, 248
AccIII	TCCGGA	1 cut(s)	85
AciI	CCGC	2 cut(s)	76, 117
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	277
AcyI	GRCGYC	1 cut(s)	260
AfaI	GTAC	3 cut(s)	62, 232, 238
AhdI	GACNNNNNGTC	1 cut(s)	165
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	1 cut(s)	24
AluI	AGCT	1 cut(s)	24
Alw21I	GWGCWC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	77
Aor13HI	TCCGGA	1 cut(s)	85
AoxI	GGCC	2 cut(s)	188, 197
ApoI	RAATTY	1 cut(s)	277
AspLEI	GCGC	2 cut(s)	144, 248
AspS9I	GGNCC	3 cut(s)	153, 189, 198
AsuHPI	GGTGA	1 cut(s)	126
AvaII	GGWCC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	269
BccI	CCATC	1 cut(s)	121
BceAI	ACGGC	1 cut(s)	247
BciT130I	CCWGG	1 cut(s)	196
BfmI	CTRYAG	1 cut(s)	105
BglI	GCCNNNNNGGC	1 cut(s)	196
BmcAI	AGTACT	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	196
Bme18I	GGWCC	1 cut(s)	153
BmeRI	GACNNNNNGTC	1 cut(s)	165
BmgT120I	GGNCC	3 cut(s)	153, 189, 198
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	196
BmsI	GCATC	1 cut(s)	39
BpmI	CTGGAG	2 cut(s)	46, 178
BpuEI	CTTGAG	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	165
BseAI	TCCGGA	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	30, 113
BseNI	ACTGG	1 cut(s)	165
Bsh1236I	CGCG	2 cut(s)	142, 248
BshFI	GGCC	2 cut(s)	190, 199
BsiHKAI	GWGCWC	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	86
BsnI	GGCC	2 cut(s)	190, 199
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp13I	TCCGGA	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	66, 82
BspACI	CCGC	2 cut(s)	76, 117
BspANI	GGCC	2 cut(s)	190, 199
BspEI	TCCGGA	1 cut(s)	85
BspFNI	CGCG	2 cut(s)	142, 248
BspLI	GGNNCC	1 cut(s)	90
BspPI	GGATC	1 cut(s)	77
BspQI	GCTCTTC	1 cut(s)	14
BsrBI	CCGCTC	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	165
BssMI	GATC	2 cut(s)	66, 82
BssNI	GRCGYC	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	30, 113
BstFNI	CGCG	2 cut(s)	142, 248
BstHHI	GCGC	2 cut(s)	144, 248
BstKTI	GATC	2 cut(s)	69, 85
BstMBI	GATC	2 cut(s)	66, 82
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 196
BstNI	CCWGG	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	194
BstSFI	CTRYAG	1 cut(s)	105
BstUI	CGCG	2 cut(s)	142, 248
BsuRI	GGCC	2 cut(s)	190, 199
BtgZI	GCGATG	1 cut(s)	37
BtsCI	GGATG	2 cut(s)	30, 113
CfoI	GCGC	2 cut(s)	144, 248
Cfr13I	GGNCC	3 cut(s)	153, 189, 198
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	3 cut(s)	61, 231, 237
CviJI	RGCY	6 cut(s)	24, 39, 91, 112, 190, 199
CviKI_1	RGCY	6 cut(s)	24, 39, 91, 112, 190, 199
CviQI	GTAC	3 cut(s)	61, 231, 237
DpnI	GATC	2 cut(s)	68, 84
DpnII	GATC	2 cut(s)	66, 82
DriI	GACNNNNNGTC	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	14
Eam1105I	GACNNNNNGTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	14
EciI	GGCGGA	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	153
EcoO109I	RGGNCCY	2 cut(s)	189, 198
EcoRI	GAATTC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	194
FauI	CCCGC	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	104
FokI	GGATG	2 cut(s)	17, 100
GlaI	GCGC	2 cut(s)	143, 247
GsuI	CTGGAG	2 cut(s)	46, 178
HaeIII	GGCC	2 cut(s)	190, 199
HapII	CCGG	1 cut(s)	86
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	2 cut(s)	144, 248
Hin1I	GRCGYC	1 cut(s)	260
Hin6I	GCGC	2 cut(s)	142, 246
HinP1I	GCGC	2 cut(s)	142, 246
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	1 cut(s)	126
Hpy166II	GTNNAC	2 cut(s)	105, 156
Hpy188I	TCNGA	3 cut(s)	99, 126, 178
Hpy188III	TCNNGA	2 cut(s)	86, 282
Hpy8I	GTNNAC	2 cut(s)	105, 156
Hpy99I	CGWCG	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4IV	ACGT	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 196
HpySE526I	ACGT	1 cut(s)	218
Hsp92I	GRCGYC	1 cut(s)	260
HspAI	GCGC	2 cut(s)	142, 246
Kpn2I	TCCGGA	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	66, 82
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	3 cut(s)	27, 73, 88
LpnPI	CCDG	6 cut(s)	10, 27, 99, 178, 181, 208
LweI	GCATC	1 cut(s)	39
MaeII	ACGT	1 cut(s)	218
MalI	GATC	2 cut(s)	68, 84
MbiI	CCGCTC	1 cut(s)	76
MboI	GATC	2 cut(s)	66, 82
MboII	GAAGA	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	9 cut(s)	130, 142, 144, 180, 202, 211, 243, 249, 283
MroI	TCCGGA	1 cut(s)	85
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	196
MvnI	CGCG	2 cut(s)	142, 248
MwoI	GCNNNNNNNGC	2 cut(s)	36, 196
NdeII	GATC	2 cut(s)	66, 82
NlaIV	GGNNCC	1 cut(s)	90
PciSI	GCTCTTC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	3 cut(s)	230, 260, 266
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	3 cut(s)	153, 189, 198
RsaI	GTAC	3 cut(s)	62, 232, 238
RsaNI	GTAC	3 cut(s)	61, 231, 237
SapI	GCTCTTC	1 cut(s)	14
Sau3AI	GATC	2 cut(s)	66, 82
Sau96I	GGNCC	3 cut(s)	153, 189, 198
ScaI	AGTACT	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	269
SetI	ASST	4 cut(s)	26, 134, 155, 221
SfaNI	GCATC	1 cut(s)	39
SfcI	CTRYAG	1 cut(s)	105
SfiI	GGCCNNNNNGGCC	1 cut(s)	196
SinI	GGWCC	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	1 cut(s)	277
SsiI	CCGC	2 cut(s)	76, 117
StyD4I	CCNGG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	138
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	3 cut(s)	81, 185, 275
TasI	AATT	1 cut(s)	277
TatI	WGTACW	2 cut(s)	60, 236
VpaK11BI	GGWCC	1 cut(s)	153
XapI	RAATTY	1 cut(s)	277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	21
XmiI	GTMKAC	1 cut(s)	104
ZrmI	AGTACT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.