Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006246

Physical Location & Seq

Genomic Coordinates Reverse (-)

59999009 .. 60004375

Gene Structure 5367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014960

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCAAAGCCATAACTTGAGGAGTGGGAGGAAGAGCAACATCTGGAGCATCCACACCCGACCCGAGATAATTGCCAAGTACCAGATCCTCGAGCGGGTCGGATCCGGCGCCTACTCCGACGTCTACCGCGCCCGCCTTCTCGCCCACAACCTCAGCGTCGCTCTCAAGGAGGTCCATGACTACCAGTCAGCCTTCCGCGAAATCGAGGCTCTCCATACGCTCCATGGCTGCCCCAAAGTCGTCGTTTTGTACAAGTACTTCCGGCGCGACGACAAGGAAGCCGTGCTAGTGCTCGAGTTTCTGGCCAGTGACCTGGAGACTGATCAGAACGGCGATGAAGAAGGAGGGCGGGATTGGCTGCGCGAGTTCAAGAGGTGGATGTTGCAGATGCTGTCTGGGATCTACGCGTGTCATTGGAATATGATGGTGCATCTGGATTTGAAGCCGAGCAATTTGTTGATTGGGGAGGACGACGTCGTTCTGGATCTTTGGTTGTTTGCTGCCAATCCGACTGGGTTCATGGTGGATGGCCCGAGTAGTGCTGGTAGTTTTGGAAAACCGATACGCTCGTGGCGTCATCTGGATTTCAAGGCGTTTCTACCTTGCGTCCATTGTGGGCAGGCTAGCGACGACGGGTCAGTTGGAAGATGGTGGCTGTCAGTGGTGGCAACAACAAGGTTTCATGAAGAGATGATGGTGCTGGGCTCTTTACTATCCTCACTTTGGGCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008047 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009893 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019827 GO:0019887 GO:0019912 GO:0022622 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0097472 GO:0098727 GO:0098772 GO:0099402 GO:0140096 GO:1901564 GO:1904029 GO:1904031 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

245

Amino Acids

27.95

Weight (kDa)

6.25

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	27 - 158	2.2e-20	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	29 - 160	6.8e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28980 AT4G28980 AT4G28980
fragaria_vesca	FvH4_1g05460
malus_domestica	MD02G1062700.v1.1 MD15G1190500.v1.1
prunus_persica	Prupe.7G226600_v2.0.a1
pyrus_communis	pycom02g04310 pycom02g04320 pycom15g17070
rosa_chinensis	RchiOBHm_Chr2g0091141
rosa_laevigata	RLG00000006226 RLG00000014960 RLG00000016185
rosa_multiflora	Rmu_co8390673.1_g000001 Rmu_sc0002343.1_g000049 Rmu_sc0004851.1_g000011
rosa_roxburghii	Rroxscaffold_2G00150500 Rroxscaffold_5G00373520 Rroxscaffold_6G00397830 Rroxscaffold_7G00210230
rosa_rugosa	Rorug02G0013600
rosa_samantha	Rh2AG059600 Rh2BG058300 Rh2CG060100 Rh2DG058900
rosa_wichuraiana	Rw2G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	123, 477
AccB1I	GGYRCC	1 cut(s)	107
AccBSI	CCGCTC	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	5 cut(s)	129, 198, 267, 363, 407
AciI	CCGC	5 cut(s)	94, 127, 133, 196, 349
AclWI	GGATC	5 cut(s)	79, 96, 109, 407, 492
AcoI	YGGCCR	1 cut(s)	303
AcyI	GRCGYC	4 cut(s)	108, 120, 474, 574
AfaI	GTAC	3 cut(s)	80, 251, 257
AfiI	CCNNNNNNNGG	2 cut(s)	94, 723
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	3 cut(s)	370, 442, 589
AhdI	GACNNNNNGTC	2 cut(s)	184, 634
AjnI	CCWGG	1 cut(s)	312
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	5 cut(s)	79, 96, 109, 407, 492
AlwNI	CAGNNNCTG	1 cut(s)	391
Ama87I	CYCGRG	4 cut(s)	62, 89, 293, 532
AoxI	GGCC	2 cut(s)	303, 529
ApeKI	GCWGC	3 cut(s)	228, 358, 500
AspLEI	GCGC	4 cut(s)	110, 131, 267, 363
AspS9I	GGNCC	2 cut(s)	172, 530
AsuNHI	GCTAGC	1 cut(s)	623
AvaI	CYCGRG	4 cut(s)	62, 89, 293, 532
AvaII	GGWCC	1 cut(s)	172
BaeI	ACNNNNGTAYC	2 cut(s)	554, 587
BalI	TGGCCA	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	707
BarI	GAAGNNNNNNTAC	2 cut(s)	242, 274
BauI	CACGAG	1 cut(s)	568
Bbv12I	GWGCWC	1 cut(s)	294
BbvCI	CCTCAGC	1 cut(s)	152
BbvI	GCAGC	3 cut(s)	215, 345, 487
BccI	CCATC	4 cut(s)	418, 521, 642, 688
BceAI	ACGGC	2 cut(s)	266, 346
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	1 cut(s)	314
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	2 cut(s)	287, 624
BfoI	RGCGCY	1 cut(s)	111
BisI	GCNGC	3 cut(s)	229, 359, 501
BlsI	GCNGC	3 cut(s)	230, 360, 502
BmcAI	AGTACT	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	314
Bme18I	GGWCC	1 cut(s)	172
BmeRI	GACNNNNNGTC	2 cut(s)	184, 634
BmeT110I	CYCGRG	4 cut(s)	62, 89, 293, 532
BmgT120I	GGNCC	2 cut(s)	172, 530
BmiI	GGNNCC	2 cut(s)	103, 109
BmrFI	CCNGG	1 cut(s)	314
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	3 cut(s)	57, 378, 439
BmtI	GCTAGC	1 cut(s)	627
BmuI	ACTGGG	1 cut(s)	522
BpmI	CTGGAG	2 cut(s)	64, 335
Bpu10I	CCTNAGC	1 cut(s)	152
BpuEI	CTTGAG	2 cut(s)	37, 149
BsaHI	GRCGYC	4 cut(s)	108, 120, 474, 574
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 723
Bse1I	ACTGG	3 cut(s)	184, 306, 517
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	3 cut(s)	48, 384, 532
BseLI	CCNNNNNNNGG	2 cut(s)	94, 723
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	3 cut(s)	184, 306, 517
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	3 cut(s)	215, 345, 487
BseYI	CCCAGC	1 cut(s)	700
Bsh1236I	CGCG	5 cut(s)	129, 198, 267, 363, 407
BshFI	GGCC	2 cut(s)	305, 531
BshNI	GGYRCC	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	4 cut(s)	62, 89, 293, 532
BsiSI	CCGG	2 cut(s)	105, 262
BslI	CCNNNNNNNGG	2 cut(s)	94, 723
BsmAI	GTCTC	1 cut(s)	311
BsnI	GGCC	2 cut(s)	305, 531
BsoBI	CYCGRG	4 cut(s)	62, 89, 293, 532
Bsp1286I	GDGCHC	2 cut(s)	294, 707
Bsp1407I	TGTACA	1 cut(s)	249
Bsp143I	GATC	5 cut(s)	84, 101, 322, 399, 484
Bsp19I	CCATGG	1 cut(s)	223
BspACI	CCGC	5 cut(s)	94, 127, 133, 196, 349
BspANI	GGCC	2 cut(s)	305, 531
BspCNI	CTCAG	1 cut(s)	165
BspFNI	CGCG	5 cut(s)	129, 198, 267, 363, 407
BspHI	TCATGA	1 cut(s)	682
BspLI	GGNNCC	2 cut(s)	103, 109
BspOI	GCTAGC	1 cut(s)	627
BspPI	GGATC	5 cut(s)	79, 96, 109, 407, 492
BspQI	GCTCTTC	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	94
BsrGI	TGTACA	1 cut(s)	249
BsrI	ACTGG	3 cut(s)	184, 306, 517
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	5 cut(s)	84, 101, 322, 399, 484
BssNI	GRCGYC	4 cut(s)	108, 120, 474, 574
BssSI	CACGAG	1 cut(s)	568
BssT1I	CCWWGG	1 cut(s)	223
Bst2BI	CACGAG	1 cut(s)	568
Bst2UI	CCWGG	1 cut(s)	314
Bst6I	CTCTTC	2 cut(s)	26, 681
BstACI	GRCGYC	4 cut(s)	108, 120, 474, 574
BstAUI	TGTACA	1 cut(s)	249
BstC8I	GCNNGC	3 cut(s)	133, 621, 625
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	3 cut(s)	48, 384, 532
BstFNI	CGCG	5 cut(s)	129, 198, 267, 363, 407
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	4 cut(s)	110, 131, 267, 363
BstKTI	GATC	5 cut(s)	87, 104, 325, 402, 487
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	5 cut(s)	84, 101, 322, 399, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	312
BstUI	CGCG	5 cut(s)	129, 198, 267, 363, 407
BstV1I	GCAGC	3 cut(s)	215, 345, 487
BstX2I	RGATCY	4 cut(s)	84, 101, 399, 484
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	4 cut(s)	84, 101, 399, 484
BsuRI	GGCC	2 cut(s)	305, 531
BtgI	CCRYGG	1 cut(s)	223
BtgZI	GCGATG	1 cut(s)	348
BtsCI	GGATG	3 cut(s)	48, 384, 532
BtsIMutI	CAGTG	2 cut(s)	313, 666
Cac8I	GCNNGC	3 cut(s)	133, 621, 625
CaiI	CAGNNNCTG	1 cut(s)	391
CciI	TCATGA	1 cut(s)	682
CfoI	GCGC	4 cut(s)	110, 131, 267, 363
Cfr13I	GGNCC	2 cut(s)	172, 530
CseI	GACGC	3 cut(s)	145, 563, 595
Csp6I	GTAC	3 cut(s)	79, 250, 256
CviAII	CATG	4 cut(s)	176, 224, 520, 683
CviQI	GTAC	3 cut(s)	79, 250, 256
DdeI	CTNAG	1 cut(s)	152
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	5 cut(s)	86, 103, 324, 401, 486
DpnII	GATC	5 cut(s)	84, 101, 322, 399, 484
DriI	GACNNNNNGTC	2 cut(s)	184, 634
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	2 cut(s)	26, 681
Eam1105I	GACNNNNNGTC	2 cut(s)	184, 634
EarI	CTCTTC	2 cut(s)	26, 681
Eco130I	CCWWGG	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	707
Eco47I	GGWCC	1 cut(s)	172
Eco88I	CYCGRG	4 cut(s)	62, 89, 293, 532
EcoRII	CCWGG	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	707
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	4 cut(s)	179, 227, 523, 686
FaiI	YATR	7 cut(s)	12, 177, 216, 225, 422, 521, 684
FatI	CATG	4 cut(s)	175, 223, 519, 682
FauI	CCCGC	3 cut(s)	87, 140, 342
FbaI	TGATCA	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	3 cut(s)	229, 359, 501
FokI	GGATG	3 cut(s)	35, 391, 539
FriOI	GRGCYC	1 cut(s)	707
Fsp4HI	GCNGC	3 cut(s)	229, 359, 501
FspBI	CTAG	2 cut(s)	287, 624
GlaI	GCGC	4 cut(s)	109, 130, 266, 362
GluI	GCNGC	3 cut(s)	229, 359, 501
GsaI	CCCAGC	1 cut(s)	704
GsuI	CTGGAG	2 cut(s)	64, 335
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	305, 531
HapII	CCGG	2 cut(s)	105, 262
HgaI	GACGC	3 cut(s)	145, 563, 595
HhaI	GCGC	4 cut(s)	110, 131, 267, 363
Hin1I	GRCGYC	4 cut(s)	108, 120, 474, 574
Hin1II	CATG	4 cut(s)	179, 227, 523, 686
Hin6I	GCGC	4 cut(s)	108, 129, 265, 361
HinP1I	GCGC	4 cut(s)	108, 129, 265, 361
HpaII	CCGG	2 cut(s)	105, 262
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	4 cut(s)	101, 118, 327, 510
Hpy188III	TCNNGA	6 cut(s)	43, 370, 434, 482, 581, 683
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	8 cut(s)	122, 161, 245, 272, 476, 479, 632, 635
HpyAV	CCTTC	3 cut(s)	146, 202, 335
HpyCH4IV	ACGT	2 cut(s)	120, 474
HpyCH4V	TGCA	3 cut(s)	4, 385, 430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	2 cut(s)	120, 474
Hsp92I	GRCGYC	4 cut(s)	108, 120, 474, 574
Hsp92II	CATG	4 cut(s)	179, 227, 523, 686
HspAI	GCGC	4 cut(s)	108, 129, 265, 361
KasI	GGCGCC	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	5 cut(s)	84, 101, 322, 399, 484
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	2 cut(s)	45, 225
Lsp1109I	GCAGC	3 cut(s)	215, 345, 487
LweI	GCATC	3 cut(s)	57, 378, 439
MaeI	CTAG	2 cut(s)	287, 624
MaeII	ACGT	2 cut(s)	120, 474
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	5 cut(s)	86, 103, 324, 401, 486
MbiI	CCGCTC	1 cut(s)	94
MboI	GATC	5 cut(s)	84, 101, 322, 399, 484
MboII	GAAGA	4 cut(s)	43, 350, 657, 698
MflI	RGATCY	4 cut(s)	84, 101, 399, 484
MhlI	GDGCHC	2 cut(s)	294, 707
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	2 cut(s)	69, 451
MluI	ACGCGT	1 cut(s)	405
MluNI	TGGCCA	1 cut(s)	305
Mly113I	GGCGCC	1 cut(s)	108
MmeI	TCCRAC	4 cut(s)	79, 141, 533, 622
Mox20I	TGGCCA	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	305
Msp20I	TGGCCA	1 cut(s)	305
MspI	CCGG	2 cut(s)	105, 262
MspR9I	CCNGG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	314
MvnI	CGCG	5 cut(s)	129, 198, 267, 363, 407
MwoI	GCNNNNNNNGC	1 cut(s)	355
NarI	GGCGCC	1 cut(s)	108
NcoI	CCATGG	1 cut(s)	223
NdeII	GATC	5 cut(s)	84, 101, 322, 399, 484
NheI	GCTAGC	1 cut(s)	623
NlaIII	CATG	4 cut(s)	179, 227, 523, 686
NlaIV	GGNNCC	2 cut(s)	103, 109
NmeAIII	GCCGAG	1 cut(s)	471
NmuCI	GTSAC	1 cut(s)	308
PaeR7I	CTCGAG	2 cut(s)	89, 293
PagI	TCATGA	1 cut(s)	682
PciSI	GCTCTTC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	1 cut(s)	571
PflFI	GACNNNGTC	1 cut(s)	473
PkrI	GCNGC	3 cut(s)	230, 360, 502
PluTI	GGCGCC	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	312
PspFI	CCCAGC	1 cut(s)	700
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	103, 109
PspPI	GGNCC	2 cut(s)	172, 530
PspXI	VCTCGAGB	2 cut(s)	89, 293
PstNI	CAGNNNCTG	1 cut(s)	391
PsuI	RGATCY	4 cut(s)	84, 101, 399, 484
PsyI	GACNNNGTC	1 cut(s)	473
RsaI	GTAC	3 cut(s)	80, 251, 257
RsaNI	GTAC	3 cut(s)	79, 250, 256
SapI	GCTCTTC	1 cut(s)	26
SatI	GCNGC	3 cut(s)	229, 359, 501
Sau3AI	GATC	5 cut(s)	84, 101, 322, 399, 484
Sau96I	GGNCC	2 cut(s)	172, 530
ScaI	AGTACT	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	2 cut(s)	294, 707
SetI	ASST	8 cut(s)	123, 153, 174, 315, 377, 477, 604, 680
SfaNI	GCATC	3 cut(s)	57, 378, 439
SfoI	GGCGCC	1 cut(s)	109
Sfr274I	CTCGAG	2 cut(s)	89, 293
SinI	GGWCC	1 cut(s)	172
SlaI	CTCGAG	2 cut(s)	89, 293
SmlI	CTYRAG	4 cut(s)	16, 89, 164, 293
SmoI	CTYRAG	4 cut(s)	16, 89, 164, 293
Sse9I	AATT	2 cut(s)	69, 451
SsiI	CCGC	5 cut(s)	94, 127, 133, 196, 349
SspDI	GGCGCC	1 cut(s)	107
SspMI	CTAG	2 cut(s)	287, 624
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	223
TaiI	ACGT	2 cut(s)	123, 477
TaqI	TCGA	3 cut(s)	90, 204, 294
TasI	AATT	2 cut(s)	69, 451
TatI	WGTACW	2 cut(s)	249, 255
TscAI	CASTG	2 cut(s)	313, 666
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	3 cut(s)	228, 358, 500
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	4 cut(s)	351, 508, 671, 699
TspRI	CASTG	2 cut(s)	313, 666
Tth111I	GACNNNGTC	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XhoI	CTCGAG	2 cut(s)	89, 293
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	2 cut(s)	287, 624
ZraI	GACGTC	2 cut(s)	121, 475
ZrmI	AGTACT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.