Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8390673.1

Orthogroup ID

OG0006246

Physical Location & Seq

Genomic Coordinates Forward (+)

39 .. 1216

Gene Structure 1178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8390673.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 683 bp

atggattctccaccggcgaagagctggagcatccacacccgacccgagatcatcgccaagtaccagatcctcgagcgggtcggatccggcgcctactccgacgtctaccgcgcccgccgcctctccgacaacctcaccgtcgccctcaaggaggtccacgactaccagtcggccttccgcgaaatcgaggcgctccagacgctccacggctgccccaacgtcgtcgttttgtacgagtacttctggcgcgaggacgaggacgccgtgctcgtcctcgagtttctgaccagcgacttggagactgtcatcggagcggcgaggaagaaggagggcgggattcgctgcggcgaggtcaagaggtggatgattcagatgctgtctgggatcgacgcctgtcatcggaatatgatcgtgcatcgggatttgaagccgagcaatctgttgatcggggaggatggcgtgctcaagctggctgatttcggacaggcaaggatactgctcgagcctggatatgctcctgatgatgaaaaccgtgaagcgtatgagcaaagctcccaaagtcaagccaatgccattcaaccacctgaagcaattcctgtagtagacaattcatttcaagaagggtacagaattcgggatggaagtatgagcaaagaagaatattttagggtcttagatgaggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008047 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009893 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019827 GO:0019887 GO:0019912 GO:0022622 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0097472 GO:0098727 GO:0098772 GO:0099402 GO:0140096 GO:1901564 GO:1904029 GO:1904031 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

228

Amino Acids

25.91

Weight (kDa)

4.93

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28980 AT4G28980 AT4G28980
fragaria_vesca	FvH4_1g05460
malus_domestica	MD02G1062700.v1.1 MD15G1190500.v1.1
prunus_persica	Prupe.7G226600_v2.0.a1
pyrus_communis	pycom02g04310 pycom02g04320 pycom15g17070
rosa_chinensis	RchiOBHm_Chr2g0091141
rosa_laevigata	RLG00000006226 RLG00000014960 RLG00000016185
rosa_multiflora	Rmu_co8390673.1_g000001 Rmu_sc0002343.1_g000049 Rmu_sc0004851.1_g000011
rosa_roxburghii	Rroxscaffold_2G00150500 Rroxscaffold_5G00373520 Rroxscaffold_6G00397830 Rroxscaffold_7G00210230
rosa_rugosa	Rorug02G0013600
rosa_samantha	Rh2AG059600 Rh2BG058300 Rh2CG060100 Rh2DG058900
rosa_wichuraiana	Rw2G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
AccB1I	GGYRCC	1 cut(s)	89
AccBSI	CCGCTC	2 cut(s)	76, 314
AccI	GTMKAC	2 cut(s)	105, 603
AccII	CGCG	3 cut(s)	111, 180, 249
AciI	CCGC	8 cut(s)	76, 109, 115, 118, 178, 314, 333, 345
AclWI	GGATC	4 cut(s)	61, 78, 91, 392
AcsI	RAATTY	1 cut(s)	630
AcuI	CTGAAG	1 cut(s)	606
AcyI	GRCGYC	4 cut(s)	90, 102, 261, 390
AfaI	GTAC	4 cut(s)	62, 233, 239, 626
AfiI	CCNNNNNNNGG	3 cut(s)	76, 151, 399
AgsI	TTSAA	3 cut(s)	427, 578, 617
AhdI	GACNNNNNGTC	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	3 cut(s)	24, 469, 552
AluI	AGCT	3 cut(s)	24, 469, 552
Alw21I	GWGCWC	2 cut(s)	270, 465
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	4 cut(s)	61, 78, 91, 392
AlwNI	CAGNNNCTG	1 cut(s)	376
Ama87I	CYCGRG	4 cut(s)	44, 71, 275, 500
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	2 cut(s)	210, 342
ApoI	RAATTY	1 cut(s)	630
Asp700I	GAANNNNTTC	1 cut(s)	591
AspLEI	GCGC	4 cut(s)	92, 113, 193, 249
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	127
AvaI	CYCGRG	4 cut(s)	44, 71, 275, 500
AvaII	GGWCC	1 cut(s)	154
BamHI	GGATCC	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	89
BarI	GAAGNNNNNNTAC	2 cut(s)	224, 256
Bbv12I	GWGCWC	2 cut(s)	270, 465
BbvI	GCAGC	2 cut(s)	197, 329
BccI	CCATC	2 cut(s)	449, 632
BceAI	ACGGC	2 cut(s)	223, 248
BciT130I	CCWGG	1 cut(s)	507
BciVI	GTATCC	1 cut(s)	486
BcoDI	GTCTC	1 cut(s)	293
BfmI	CTRYAG	1 cut(s)	597
BfoI	RGCGCY	2 cut(s)	93, 194
BfuI	GTATCC	1 cut(s)	486
BisI	GCNGC	5 cut(s)	118, 211, 315, 343, 346
BlsI	GCNGC	5 cut(s)	119, 212, 316, 344, 347
BmcAI	AGTACT	1 cut(s)	239
Bme1390I	CCNGG	1 cut(s)	507
Bme18I	GGWCC	1 cut(s)	154
BmeRI	GACNNNNNGTC	1 cut(s)	166
BmeT110I	CYCGRG	4 cut(s)	44, 71, 275, 500
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	2 cut(s)	85, 91
BmrFI	CCNGG	1 cut(s)	507
BmsI	GCATC	3 cut(s)	39, 363, 424
BoxI	GACNNNNGTC	1 cut(s)	393
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
BpmI	CTGGAG	2 cut(s)	46, 179
BpuEI	CTTGAG	2 cut(s)	131, 449
BsaHI	GRCGYC	4 cut(s)	90, 102, 261, 390
BsaJI	CCNNGG	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 151, 399
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	4 cut(s)	30, 369, 460, 643
BseLI	CCNNNNNNNGG	3 cut(s)	76, 151, 399
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	197, 329
Bsh1236I	CGCG	3 cut(s)	111, 180, 249
BshFI	GGCC	1 cut(s)	173
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	2 cut(s)	270, 465
BsiHKCI	CYCGRG	4 cut(s)	44, 71, 275, 500
BsiSI	CCGG	2 cut(s)	14, 87
BslI	CCNNNNNNNGG	3 cut(s)	76, 151, 399
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	173
BsoBI	CYCGRG	4 cut(s)	44, 71, 275, 500
Bsp1286I	GDGCHC	2 cut(s)	270, 465
Bsp143I	GATC	6 cut(s)	48, 66, 83, 384, 408, 444
BspACI	CCGC	8 cut(s)	76, 109, 115, 118, 178, 314, 333, 345
BspANI	GGCC	1 cut(s)	173
BspFNI	CGCG	3 cut(s)	111, 180, 249
BspLI	GGNNCC	2 cut(s)	85, 91
BspPI	GGATC	4 cut(s)	61, 78, 91, 392
BspQI	GCTCTTC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	89
BsrBI	CCGCTC	2 cut(s)	76, 314
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	166
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	6 cut(s)	48, 66, 83, 384, 408, 444
BssNI	GRCGYC	4 cut(s)	90, 102, 261, 390
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	3 cut(s)	139, 304, 533
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	4 cut(s)	90, 102, 261, 390
BstC8I	GCNNGC	3 cut(s)	115, 461, 471
BstDEI	CTNAG	1 cut(s)	673
BstDSI	CCRYGG	1 cut(s)	205
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstF5I	GGATG	4 cut(s)	30, 369, 460, 643
BstFNI	CGCG	3 cut(s)	111, 180, 249
BstH2I	RGCGCY	2 cut(s)	93, 194
BstHHI	GCGC	4 cut(s)	92, 113, 193, 249
BstKTI	GATC	6 cut(s)	51, 69, 86, 387, 411, 447
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	6 cut(s)	48, 66, 83, 384, 408, 444
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 199, 339
BstNI	CCWGG	1 cut(s)	507
BstPAI	GACNNNNGTC	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	505
BstSFI	CTRYAG	1 cut(s)	597
BstUI	CGCG	3 cut(s)	111, 180, 249
BstV1I	GCAGC	2 cut(s)	197, 329
BstX2I	RGATCY	2 cut(s)	66, 83
BstXI	CCANNNNNNTGG	1 cut(s)	295
BstYI	RGATCY	2 cut(s)	66, 83
BsuI	GTATCC	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	173
BtgI	CCRYGG	1 cut(s)	205
BtgZI	GCGATG	1 cut(s)	37
BtsCI	GGATG	4 cut(s)	30, 369, 460, 643
Cac8I	GCNNGC	3 cut(s)	115, 461, 471
CaiI	CAGNNNCTG	1 cut(s)	376
CfoI	GCGC	4 cut(s)	92, 113, 193, 249
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	154
CseI	GACGC	3 cut(s)	208, 269, 398
Csp6I	GTAC	4 cut(s)	61, 232, 238, 625
CviJI	RGCY	9 cut(s)	24, 173, 210, 430, 469, 473, 505, 552, 566
CviKI_1	RGCY	9 cut(s)	24, 173, 210, 430, 469, 473, 505, 552, 566
CviQI	GTAC	4 cut(s)	61, 232, 238, 625
DdeI	CTNAG	1 cut(s)	673
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	6 cut(s)	50, 68, 85, 386, 410, 446
DpnII	GATC	6 cut(s)	48, 66, 83, 384, 408, 444
DriI	GACNNNNNGTC	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	14
Eam1105I	GACNNNNNGTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	606
Eco88I	CYCGRG	4 cut(s)	44, 71, 275, 500
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	630
EcoRII	CCWGG	1 cut(s)	505
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
FaiI	YATR	4 cut(s)	407, 513, 543, 647
FauI	CCCGC	3 cut(s)	69, 122, 326
FblI	GTMKAC	2 cut(s)	105, 603
Fnu4HI	GCNGC	5 cut(s)	118, 211, 315, 343, 346
FokI	GGATG	4 cut(s)	17, 376, 467, 650
Fsp4HI	GCNGC	5 cut(s)	118, 211, 315, 343, 346
GlaI	GCGC	4 cut(s)	91, 112, 192, 248
GluI	GCNGC	5 cut(s)	118, 211, 315, 343, 346
GsuI	CTGGAG	2 cut(s)	46, 179
HaeII	RGCGCY	2 cut(s)	93, 194
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	2 cut(s)	14, 87
HgaI	GACGC	3 cut(s)	208, 269, 398
HhaI	GCGC	4 cut(s)	92, 113, 193, 249
Hin1I	GRCGYC	4 cut(s)	90, 102, 261, 390
Hin6I	GCGC	4 cut(s)	90, 111, 191, 247
HinP1I	GCGC	4 cut(s)	90, 111, 191, 247
HinfI	GANTC	3 cut(s)	5, 337, 367
HpaII	CCGG	2 cut(s)	14, 87
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	3 cut(s)	106, 157, 604
Hpy188I	TCNGA	8 cut(s)	83, 100, 127, 285, 311, 372, 402, 482
Hpy188III	TCNNGA	6 cut(s)	196, 355, 419, 518, 617, 635
Hpy8I	GTNNAC	3 cut(s)	106, 157, 604
Hpy99I	CGWCG	5 cut(s)	104, 143, 224, 227, 392
HpyAV	CCTTC	3 cut(s)	184, 319, 614
HpyCH4III	ACNGT	3 cut(s)	139, 304, 533
HpyCH4IV	ACGT	2 cut(s)	102, 219
HpyCH4V	TGCA	1 cut(s)	415
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 199, 339
HpyF3I	CTNAG	1 cut(s)	673
HpySE526I	ACGT	2 cut(s)	102, 219
Hsp92I	GRCGYC	4 cut(s)	90, 102, 261, 390
HspAI	GCGC	4 cut(s)	90, 111, 191, 247
KasI	GGCGCC	1 cut(s)	89
Kzo9I	GATC	6 cut(s)	48, 66, 83, 384, 408, 444
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	6 cut(s)	27, 198, 207, 311, 520, 557
Lsp1109I	GCAGC	2 cut(s)	197, 329
LweI	GCATC	3 cut(s)	39, 363, 424
MaeII	ACGT	2 cut(s)	102, 219
MalI	GATC	6 cut(s)	50, 68, 85, 386, 410, 446
MbiI	CCGCTC	2 cut(s)	76, 314
MboI	GATC	6 cut(s)	48, 66, 83, 384, 408, 444
MboII	GAAGA	3 cut(s)	31, 334, 668
MflI	RGATCY	2 cut(s)	66, 83
MhlI	GDGCHC	2 cut(s)	270, 465
MluCI	AATT	3 cut(s)	591, 607, 630
Mly113I	GGCGCC	1 cut(s)	90
MmeI	TCCRAC	3 cut(s)	61, 123, 150
MroXI	GAANNNNTTC	1 cut(s)	591
MspI	CCGG	2 cut(s)	14, 87
MspR9I	CCNGG	1 cut(s)	507
MvaI	CCWGG	1 cut(s)	507
MvnI	CGCG	3 cut(s)	111, 180, 249
MwoI	GCNNNNNNNGC	3 cut(s)	117, 199, 339
NarI	GGCGCC	1 cut(s)	90
NdeII	GATC	6 cut(s)	48, 66, 83, 384, 408, 444
NlaIV	GGNNCC	2 cut(s)	85, 91
NmeAIII	GCCGAG	1 cut(s)	456
PaeR7I	CTCGAG	3 cut(s)	71, 275, 500
PciSI	GCTCTTC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	3 cut(s)	231, 261, 267
PdmI	GAANNNNTTC	1 cut(s)	591
PfeI	GAWTC	3 cut(s)	5, 337, 367
PkrI	GCNGC	5 cut(s)	119, 212, 316, 344, 347
PluTI	GGCGCC	1 cut(s)	93
PshAI	GACNNNNGTC	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	2 cut(s)	85, 91
PspPI	GGNCC	1 cut(s)	154
PspXI	VCTCGAGB	3 cut(s)	71, 275, 500
PstNI	CAGNNNCTG	1 cut(s)	376
PsuI	RGATCY	2 cut(s)	66, 83
RsaI	GTAC	4 cut(s)	62, 233, 239, 626
RsaNI	GTAC	4 cut(s)	61, 232, 238, 625
SapI	GCTCTTC	1 cut(s)	14
SatI	GCNGC	5 cut(s)	118, 211, 315, 343, 346
Sau3AI	GATC	6 cut(s)	48, 66, 83, 384, 408, 444
Sau96I	GGNCC	1 cut(s)	154
ScaI	AGTACT	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	2 cut(s)	270, 465
SfaNI	GCATC	3 cut(s)	39, 363, 424
SfcI	CTRYAG	1 cut(s)	597
SfoI	GGCGCC	1 cut(s)	91
Sfr274I	CTCGAG	3 cut(s)	71, 275, 500
SgrAI	CRCCGGYG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	154
SlaI	CTCGAG	3 cut(s)	71, 275, 500
SmlI	CTYRAG	5 cut(s)	71, 146, 275, 464, 500
SmoI	CTYRAG	5 cut(s)	71, 146, 275, 464, 500
Sse9I	AATT	3 cut(s)	591, 607, 630
SsiI	CCGC	8 cut(s)	76, 109, 115, 118, 178, 314, 333, 345
SspDI	GGCGCC	1 cut(s)	89
SspI	AATATT	1 cut(s)	662
StyD4I	CCNGG	1 cut(s)	505
TaaI	ACNGT	3 cut(s)	139, 304, 533
TaiI	ACGT	2 cut(s)	105, 222
TaqI	TCGA	5 cut(s)	72, 186, 276, 387, 501
TasI	AATT	3 cut(s)	591, 607, 630
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	3 cut(s)	120, 317, 348
TfiI	GAWTC	3 cut(s)	5, 337, 367
TseI	GCWGC	2 cut(s)	210, 342
TspDTI	ATGAA	2 cut(s)	540, 600
VpaK11BI	GGWCC	1 cut(s)	154
XagI	CCTNNNNNAGG	1 cut(s)	149
XapI	RAATTY	1 cut(s)	630
XhoI	CTCGAG	3 cut(s)	71, 275, 500
XmiI	GTMKAC	2 cut(s)	105, 603
XmnI	GAANNNNTTC	1 cut(s)	591
ZraI	GACGTC	1 cut(s)	103
ZrmI	AGTACT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.