Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006246

Physical Location & Seq

Genomic Coordinates Forward (+)

87870134 .. 87872242

Gene Structure 2109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00150500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGATTCTCCACCGGCGAAGAGCTGGAGCATCCACACCCGACCCGAGATCATCGCCAAGTACCAGATCCTCGAGCGGGTCGGATCCGGCGCCTACTCCGACGTCTACCGTGCCCGCCGCCTCTCGGACAACCTCACCGTCGCCCTCAAGGAGGTCCACGACTACCAGTCGGCCTTCCGCGAAATCGAGGCGCTCCAGACGCTCCACAGCTGCCCCAACGTCGTCGTTTTGTACGAGTACTTCTGGCGCGAGGACGAGGATGCCGTGCTCGTGCTCGAGTTTCTGGCCAGCGACCTGGAGACTGTGATCAGAGCGGCGAAGAAGAAGGAGGGCGGGATTGGCTGCGGCGAGGTCAAGAGGTGGATGCTGCAGATGCTGTCTGGCATCGACGCGTGTCATCGGAATATGATCGTGCATCGGGATTTGAAGCCGAGCAATCTGTTGATCGGGGAGGAGGGCGTGCTCAAGCTGGCTGATTTCGGACAGGCAAGGATACTGCTCGAGCCTGGATATGCTCCTGATGATGAAAACCGTGAAGCATATGAGCAAAGCTCCCAAAGTCAAGCCAATGCCATTCAACCACCTGAAGCAATTCCTGTAGAAGACAATTCATTTCAAGAAGGGTACAGAATTCGGGATGGAAGTATGAGCAAAGAAGAATATTTTAGGGTCTTAGATGAGGTCAAGGCAAAAGATTTTGACAAGGATACAAATTTTCCTGATGGAGATACATCTTGTCTAGCAACCTGTACAGCAAGTGACGTAGACGATGAGGTTTTCAAGGCTTCTTATTCATACGAGCCAGAGGATGGTGGAGATGATAGAGTTGGTATGACATCCTGTGTTGGAACTCGATGGTTCAGAGCCCCTGAACTTCTCTACGGGTCAGTAGACTATGGTTTAGAGGTAGATTTATGGTCATTGGGTTGCATTTTTGCTGAGCTTTTTACCCTGCAACCACTCTTTCCCGGGAATTCTGATATCGATCAGCTCAGCAGAATCATCAGCGTTCTGGGAAATCTAACTGAGGAGATATGGCCTGAGTGTGACAAGCTTCCGGATTACAAGACAATTTCATTTAATAAAGTAGAAAACCCAATTGGTATAGGGGCCTGTCTCCCCAGTCGTTCCCCGGGTGAAGTCGCTATGGTGAGCAGACTTGTTTGCTATGACCCAGCTAGAAGAGCTACGGCAATGGAACTGCTCCAAGACAAGTATTTCAATGAAGAGCCACTTCCAGTTCCCCTATCTGAGCTGCATGTTCCCCTCGAGAAGAGTGGGCCAGATGAGGTTTCTGGTGGCTGCCGTGATTACAATGATATGGGTTCAGACTCTGATTTTGATGAATTTGCCAATGCGGAAATTACCGCCACCAAAACTGGTTCTTTCATGCAGTTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008047 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009893 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019827 GO:0019887 GO:0019912 GO:0022622 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0097472 GO:0098727 GO:0098772 GO:0099402 GO:0140096 GO:1901564 GO:1904029 GO:1904031 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

467

Amino Acids

52.26

Weight (kDa)

4.47

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	21 - 167	1.9e-32	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	23 - 171	7.5e-17	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	278 - 407	5.5e-19	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28980 AT4G28980 AT4G28980
fragaria_vesca	FvH4_1g05460
malus_domestica	MD02G1062700.v1.1 MD15G1190500.v1.1
prunus_persica	Prupe.7G226600_v2.0.a1
pyrus_communis	pycom02g04310 pycom02g04320 pycom15g17070
rosa_chinensis	RchiOBHm_Chr2g0091141
rosa_laevigata	RLG00000006226 RLG00000014960 RLG00000016185
rosa_multiflora	Rmu_co8390673.1_g000001 Rmu_sc0002343.1_g000049 Rmu_sc0004851.1_g000011
rosa_roxburghii	Rroxscaffold_2G00150500 Rroxscaffold_5G00373520 Rroxscaffold_6G00397830 Rroxscaffold_7G00210230
rosa_rugosa	Rorug02G0013600
rosa_samantha	Rh2AG059600 Rh2BG058300 Rh2CG060100 Rh2DG058900
rosa_wichuraiana	Rw2G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	809
AccBSI	CCGCTC	2 cut(s)	76, 314
AccI	GTMKAC	3 cut(s)	105, 765, 891
AccII	CGCG	3 cut(s)	180, 249, 392
AccIII	TCCGGA	1 cut(s)	1057
AciI	CCGC	9 cut(s)	76, 115, 118, 178, 314, 333, 345, 1358, 1368
AclWI	GGATC	3 cut(s)	61, 78, 91
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	4 cut(s)	630, 712, 973, 1346
AcuI	CTGAAG	1 cut(s)	606
AcyI	GRCGYC	2 cut(s)	90, 102
AfaI	GTAC	5 cut(s)	62, 233, 239, 626, 751
AfiI	CCNNNNNNNGG	4 cut(s)	76, 124, 151, 809
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	5 cut(s)	427, 578, 617, 781, 1222
AhdI	GACNNNNNGTC	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	294, 505
AjuI	GAANNNNNNNTTGG	2 cut(s)	1083, 1115
Alw21I	GWGCWC	3 cut(s)	270, 276, 465
Alw26I	GTCTC	2 cut(s)	293, 1121
AlwI	GGATC	3 cut(s)	61, 78, 91
AlwNI	CAGNNNCTG	2 cut(s)	376, 1334
Ama87I	CYCGRG	7 cut(s)	44, 71, 275, 500, 968, 1132, 1268
Aor13HI	TCCGGA	1 cut(s)	1057
AoxI	GGCC	5 cut(s)	171, 285, 1037, 1110, 1280
ApeKI	GCWGC	5 cut(s)	210, 342, 367, 1255, 1302
ApoI	RAATTY	4 cut(s)	630, 712, 973, 1346
ArsI	GACNNNNNNTTYG	2 cut(s)	1322, 1354
Asp700I	GAANNNNTTC	1 cut(s)	591
AspLEI	GCGC	3 cut(s)	92, 193, 249
AspS9I	GGNCC	3 cut(s)	154, 1110, 1280
AsuC2I	CCSGG	4 cut(s)	969, 970, 1133, 1134
AsuHPI	GGTGA	3 cut(s)	127, 1148, 1162
AvaI	CYCGRG	7 cut(s)	44, 71, 275, 500, 968, 1132, 1268
AvaII	GGWCC	1 cut(s)	154
BaeGI	GKGCMC	1 cut(s)	115
BalI	TGGCCA	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	868
BarI	GAAGNNNNNNTAC	2 cut(s)	224, 256
BauI	CACGAG	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	609
Bbv12I	GWGCWC	3 cut(s)	270, 276, 465
BbvI	GCAGC	5 cut(s)	197, 329, 354, 1242, 1289
BccI	CCATC	4 cut(s)	632, 716, 803, 849
BceAI	ACGGC	3 cut(s)	248, 1206, 1290
BciT130I	CCWGG	2 cut(s)	296, 507
BciVI	GTATCC	2 cut(s)	486, 700
BclI	TGATCA	1 cut(s)	306
BcnI	CCSGG	4 cut(s)	969, 970, 1133, 1134
BcoDI	GTCTC	2 cut(s)	293, 1121
BfaI	CTAG	2 cut(s)	740, 1179
BfmI	CTRYAG	2 cut(s)	368, 597
BfoI	RGCGCY	2 cut(s)	93, 194
BfuI	GTATCC	2 cut(s)	486, 700
BisI	GCNGC	8 cut(s)	118, 211, 315, 343, 346, 368, 1256, 1303
BlpI	GCTNAGC	2 cut(s)	939, 992
BlsI	GCNGC	8 cut(s)	119, 212, 316, 344, 347, 369, 1257, 1304
BmcAI	AGTACT	1 cut(s)	239
Bme1390I	CCNGG	6 cut(s)	296, 507, 969, 970, 1133, 1134
Bme18I	GGWCC	1 cut(s)	154
BmeRI	GACNNNNNGTC	1 cut(s)	166
BmeT110I	CYCGRG	7 cut(s)	44, 71, 275, 500, 968, 1132, 1268
BmgT120I	GGNCC	3 cut(s)	154, 1110, 1280
BmiI	GGNNCC	3 cut(s)	85, 91, 1111
BmrFI	CCNGG	6 cut(s)	296, 507, 969, 970, 1133, 1134
BmrI	ACTGGG	1 cut(s)	1116
BmsI	GCATC	6 cut(s)	39, 250, 354, 363, 393, 424
BmuI	ACTGGG	1 cut(s)	1116
BoxI	GACNNNNGTC	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	609
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
BpmI	CTGGAG	3 cut(s)	46, 179, 317
Bpu1102I	GCTNAGC	2 cut(s)	939, 992
BpuEI	CTTGAG	2 cut(s)	131, 449
BpuMI	CCSGG	4 cut(s)	969, 970, 1133, 1134
Bsa29I	ATCGAT	1 cut(s)	984
BsaBI	GATNNNNATC	1 cut(s)	984
BsaHI	GRCGYC	2 cut(s)	90, 102
BsaJI	CCNNGG	3 cut(s)	968, 1131, 1132
BsaWI	WCCGGW	1 cut(s)	1057
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 124, 151, 809
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	4 cut(s)	166, 1122, 1238, 1384
Bse3DI	GCAATG	1 cut(s)	1200
Bse8I	GATNNNNATC	1 cut(s)	984
BseAI	TCCGGA	1 cut(s)	1057
BseBI	CCWGG	2 cut(s)	296, 507
BseCI	ATCGAT	1 cut(s)	984
BseDI	CCNNGG	3 cut(s)	968, 1131, 1132
BseGI	GGATG	6 cut(s)	30, 265, 369, 643, 814, 836
BseJI	GATNNNNATC	1 cut(s)	984
BseLI	CCNNNNNNNGG	4 cut(s)	76, 124, 151, 809
BseMI	GCAATG	1 cut(s)	1200
BseMII	CTCAG	5 cut(s)	930, 1006, 1017, 1032, 1242
BseNI	ACTGG	4 cut(s)	166, 1122, 1238, 1384
BseRI	GAGGAG	2 cut(s)	467, 1043
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	5 cut(s)	197, 329, 354, 1242, 1289
BseYI	CCCAGC	1 cut(s)	1174
Bsh1236I	CGCG	3 cut(s)	180, 249, 392
BshFI	GGCC	5 cut(s)	173, 287, 1039, 1112, 1282
BshNI	GGYRCC	1 cut(s)	89
BshVI	ATCGAT	1 cut(s)	984
BsiHKAI	GWGCWC	3 cut(s)	270, 276, 465
BsiHKCI	CYCGRG	7 cut(s)	44, 71, 275, 500, 968, 1132, 1268
BsiSI	CCGG	5 cut(s)	14, 87, 969, 1058, 1133
BslI	CCNNNNNNNGG	4 cut(s)	76, 124, 151, 809
BsmAI	GTCTC	2 cut(s)	293, 1121
BsnI	GGCC	5 cut(s)	173, 287, 1039, 1112, 1282
BsoBI	CYCGRG	7 cut(s)	44, 71, 275, 500, 968, 1132, 1268
Bsp1286I	GDGCHC	5 cut(s)	115, 270, 276, 465, 868
Bsp13I	TCCGGA	1 cut(s)	1057
Bsp1407I	TGTACA	1 cut(s)	749
Bsp143I	GATC	7 cut(s)	48, 66, 83, 306, 408, 444, 985
Bsp1720I	GCTNAGC	2 cut(s)	939, 992
BspACI	CCGC	9 cut(s)	76, 115, 118, 178, 314, 333, 345, 1358, 1368
BspANI	GGCC	5 cut(s)	173, 287, 1039, 1112, 1282
BspCNI	CTCAG	5 cut(s)	931, 1005, 1018, 1033, 1243
BspDI	ATCGAT	1 cut(s)	984
BspEI	TCCGGA	1 cut(s)	1057
BspFNI	CGCG	3 cut(s)	180, 249, 392
BspLI	GGNNCC	3 cut(s)	85, 91, 1111
BspMAI	CTGCAG	1 cut(s)	372
BspPI	GGATC	3 cut(s)	61, 78, 91
BspQI	GCTCTTC	3 cut(s)	14, 1177, 1221
BspT107I	GGYRCC	1 cut(s)	89
BsrBI	CCGCTC	2 cut(s)	76, 314
BsrDI	GCAATG	1 cut(s)	1200
BsrFI	RCCGGY	1 cut(s)	13
BsrGI	TGTACA	1 cut(s)	749
BsrI	ACTGG	4 cut(s)	166, 1122, 1238, 1384
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	3 cut(s)	968, 1131, 1132
BssMI	GATC	7 cut(s)	48, 66, 83, 306, 408, 444, 985
BssNI	GRCGYC	2 cut(s)	90, 102
BssSI	CACGAG	1 cut(s)	269
Bst2BI	CACGAG	1 cut(s)	269
Bst2UI	CCWGG	2 cut(s)	296, 507
Bst4CI	ACNGT	4 cut(s)	110, 139, 304, 533
Bst6I	CTCTTC	4 cut(s)	14, 1177, 1221, 1268
BstACI	GRCGYC	2 cut(s)	90, 102
BstAUI	TGTACA	1 cut(s)	749
BstC8I	GCNNGC	4 cut(s)	115, 289, 461, 471
BstDEI	CTNAG	6 cut(s)	673, 939, 992, 1026, 1041, 1251
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstF5I	GGATG	6 cut(s)	30, 265, 369, 643, 814, 836
BstFNI	CGCG	3 cut(s)	180, 249, 392
BstH2I	RGCGCY	2 cut(s)	93, 194
BstHHI	GCGC	3 cut(s)	92, 193, 249
BstKTI	GATC	7 cut(s)	51, 69, 86, 309, 411, 447, 988
BstMAI	GTCTC	2 cut(s)	293, 1121
BstMBI	GATC	7 cut(s)	48, 66, 83, 306, 408, 444, 985
BstMWI	GCNNNNNNNGC	4 cut(s)	199, 339, 373, 1184
BstNI	CCWGG	2 cut(s)	296, 507
BstNSI	RCATGY	1 cut(s)	1262
BstPAI	GACNNNNGTC	1 cut(s)	393
BstSCI	CCNGG	6 cut(s)	294, 505, 967, 968, 1131, 1132
BstSFI	CTRYAG	2 cut(s)	368, 597
BstSLI	GKGCMC	1 cut(s)	115
BstUI	CGCG	3 cut(s)	180, 249, 392
BstV1I	GCAGC	5 cut(s)	197, 329, 354, 1242, 1289
BstV2I	GAAGAC	1 cut(s)	609
BstX2I	RGATCY	2 cut(s)	66, 83
BstXI	CCANNNNNNTGG	1 cut(s)	295
BstYI	RGATCY	2 cut(s)	66, 83
Bsu15I	ATCGAT	1 cut(s)	984
BsuI	GTATCC	2 cut(s)	486, 700
BsuRI	GGCC	5 cut(s)	173, 287, 1039, 1112, 1282
BsuTUI	ATCGAT	1 cut(s)	984
BtgZI	GCGATG	1 cut(s)	37
BtsCI	GGATG	6 cut(s)	30, 265, 369, 643, 814, 836
Cac8I	GCNNGC	4 cut(s)	115, 289, 461, 471
CaiI	CAGNNNCTG	2 cut(s)	376, 1334
CfoI	GCGC	3 cut(s)	92, 193, 249
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	3 cut(s)	154, 1110, 1280
Cfr9I	CCCGGG	2 cut(s)	968, 1132
ClaI	ATCGAT	1 cut(s)	984
CseI	GACGC	2 cut(s)	208, 398
Csp6I	GTAC	5 cut(s)	61, 232, 238, 625, 750
CviAII	CATG	2 cut(s)	1259, 1390
CviQI	GTAC	5 cut(s)	61, 232, 238, 625, 750
DdeI	CTNAG	6 cut(s)	673, 939, 992, 1026, 1041, 1251
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	7 cut(s)	50, 68, 85, 308, 410, 446, 987
DpnII	GATC	7 cut(s)	48, 66, 83, 306, 408, 444, 985
DriI	GACNNNNNGTC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	4 cut(s)	14, 1177, 1221, 1268
Eam1105I	GACNNNNNGTC	1 cut(s)	166
EarI	CTCTTC	4 cut(s)	14, 1177, 1221, 1268
Eco24I	GRGCYC	1 cut(s)	868
Eco32I	GATATC	1 cut(s)	982
Eco47I	GGWCC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	606
Eco88I	CYCGRG	7 cut(s)	44, 71, 275, 500, 968, 1132, 1268
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	1110
EcoRI	GAATTC	2 cut(s)	630, 973
EcoRII	CCWGG	2 cut(s)	294, 505
EcoRV	GATATC	1 cut(s)	982
EcoT38I	GRGCYC	1 cut(s)	868
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
FaeI	CATG	2 cut(s)	1262, 1393
FalI	AAGNNNNNCTT	2 cut(s)	1218, 1250
FatI	CATG	2 cut(s)	1258, 1389
FauI	CCCGC	3 cut(s)	69, 122, 326
FauNDI	CATATG	1 cut(s)	541
FbaI	TGATCA	1 cut(s)	306
FblI	GTMKAC	3 cut(s)	105, 765, 891
Fnu4HI	GCNGC	8 cut(s)	118, 211, 315, 343, 346, 368, 1256, 1303
FokI	GGATG	6 cut(s)	17, 272, 376, 650, 821, 823
FriOI	GRGCYC	1 cut(s)	868
Fsp4HI	GCNGC	8 cut(s)	118, 211, 315, 343, 346, 368, 1256, 1303
FspBI	CTAG	2 cut(s)	740, 1179
GlaI	GCGC	3 cut(s)	91, 192, 248
GluI	GCNGC	8 cut(s)	118, 211, 315, 343, 346, 368, 1256, 1303
GsaI	CCCAGC	1 cut(s)	1178
GsuI	CTGGAG	3 cut(s)	46, 179, 317
HaeII	RGCGCY	2 cut(s)	93, 194
HaeIII	GGCC	5 cut(s)	173, 287, 1039, 1112, 1282
HapII	CCGG	5 cut(s)	14, 87, 969, 1058, 1133
HgaI	GACGC	2 cut(s)	208, 398
HhaI	GCGC	3 cut(s)	92, 193, 249
Hin1I	GRCGYC	2 cut(s)	90, 102
Hin1II	CATG	2 cut(s)	1262, 1393
Hin6I	GCGC	3 cut(s)	90, 191, 247
HinP1I	GCGC	3 cut(s)	90, 191, 247
HindIII	AAGCTT	1 cut(s)	1052
HinfI	GANTC	3 cut(s)	5, 999, 1331
HpaII	CCGG	5 cut(s)	14, 87, 969, 1058, 1133
HphI	GGTGA	3 cut(s)	127, 1148, 1162
Hpy166II	GTNNAC	4 cut(s)	106, 157, 766, 892
Hpy8I	GTNNAC	4 cut(s)	106, 157, 766, 892
Hpy99I	CGWCG	5 cut(s)	104, 143, 224, 227, 392
HpyAV	CCTTC	3 cut(s)	184, 319, 614
HpyCH4III	ACNGT	4 cut(s)	110, 139, 304, 533
HpyCH4IV	ACGT	3 cut(s)	102, 219, 762
HpyCH4V	TGCA	6 cut(s)	370, 415, 930, 955, 1258, 1393
HpyF10VI	GCNNNNNNNGC	4 cut(s)	199, 339, 373, 1184
HpyF3I	CTNAG	6 cut(s)	673, 939, 992, 1026, 1041, 1251
HpySE526I	ACGT	3 cut(s)	102, 219, 762
Hsp92I	GRCGYC	2 cut(s)	90, 102
Hsp92II	CATG	2 cut(s)	1262, 1393
HspAI	GCGC	3 cut(s)	90, 191, 247
KasI	GGCGCC	1 cut(s)	89
Kpn2I	TCCGGA	1 cut(s)	1057
Ksp22I	TGATCA	1 cut(s)	306
Kzo9I	GATC	7 cut(s)	48, 66, 83, 306, 408, 444, 985
LguI	GCTCTTC	3 cut(s)	14, 1177, 1221
LmnI	GCTCC	6 cut(s)	27, 198, 207, 520, 557, 1209
Lsp1109I	GCAGC	5 cut(s)	197, 329, 354, 1242, 1289
LweI	GCATC	6 cut(s)	39, 250, 354, 363, 393, 424
MaeI	CTAG	2 cut(s)	740, 1179
MaeII	ACGT	3 cut(s)	102, 219, 762
MaeIII	GTNAC	2 cut(s)	758, 1046
MalI	GATC	7 cut(s)	50, 68, 85, 308, 410, 446, 987
MbiI	CCGCTC	2 cut(s)	76, 314
MboI	GATC	7 cut(s)	48, 66, 83, 306, 408, 444, 985
MboII	GAAGA	8 cut(s)	31, 331, 334, 614, 668, 1194, 1238, 1285
MfeI	CAATTG	1 cut(s)	1098
MflI	RGATCY	2 cut(s)	66, 83
MhlI	GDGCHC	5 cut(s)	115, 270, 276, 465, 868
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	9 cut(s)	591, 607, 630, 712, 973, 1071, 1098, 1346, 1362
MluI	ACGCGT	1 cut(s)	390
MluNI	TGGCCA	1 cut(s)	287
Mly113I	GGCGCC	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	1325
MmeI	TCCRAC	3 cut(s)	61, 123, 826
Mox20I	TGGCCA	1 cut(s)	287
MroI	TCCGGA	1 cut(s)	1057
MroXI	GAANNNNTTC	1 cut(s)	591
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	1 cut(s)	1080
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	5 cut(s)	14, 87, 969, 1058, 1133
MspR9I	CCNGG	6 cut(s)	296, 507, 969, 970, 1133, 1134
MunI	CAATTG	1 cut(s)	1098
MvaI	CCWGG	2 cut(s)	296, 507
MvnI	CGCG	3 cut(s)	180, 249, 392
MwoI	GCNNNNNNNGC	4 cut(s)	199, 339, 373, 1184
NarI	GGCGCC	1 cut(s)	90
NciI	CCSGG	4 cut(s)	969, 970, 1133, 1134
NdeI	CATATG	1 cut(s)	541
NdeII	GATC	7 cut(s)	48, 66, 83, 306, 408, 444, 985
NlaIII	CATG	2 cut(s)	1262, 1393
NlaIV	GGNNCC	3 cut(s)	85, 91, 1111
NmeAIII	GCCGAG	1 cut(s)	456
NmuCI	GTSAC	2 cut(s)	758, 1046
NspI	RCATGY	1 cut(s)	1262
PaeR7I	CTCGAG	4 cut(s)	71, 275, 500, 1268
PciSI	GCTCTTC	3 cut(s)	14, 1177, 1221
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 261
PdmI	GAANNNNTTC	1 cut(s)	591
PfeI	GAWTC	2 cut(s)	5, 999
PflMI	CCANNNNNTGG	1 cut(s)	809
PkrI	GCNGC	8 cut(s)	119, 212, 316, 344, 347, 369, 1257, 1304
PleI	GAGTC	1 cut(s)	1325
PluTI	GGCGCC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	1325
PshAI	GACNNNNGTC	1 cut(s)	393
Psp6I	CCWGG	2 cut(s)	294, 505
PspFI	CCCAGC	1 cut(s)	1174
PspGI	CCWGG	2 cut(s)	294, 505
PspN4I	GGNNCC	3 cut(s)	85, 91, 1111
PspPI	GGNCC	3 cut(s)	154, 1110, 1280
PspXI	VCTCGAGB	3 cut(s)	71, 275, 500
PstI	CTGCAG	1 cut(s)	372
PstNI	CAGNNNCTG	2 cut(s)	376, 1334
PsuI	RGATCY	2 cut(s)	66, 83
PvuII	CAGCTG	1 cut(s)	210
RsaI	GTAC	5 cut(s)	62, 233, 239, 626, 751
RsaNI	GTAC	5 cut(s)	61, 232, 238, 625, 750
SapI	GCTCTTC	3 cut(s)	14, 1177, 1221
SaqAI	TTAA	1 cut(s)	1080
SatI	GCNGC	8 cut(s)	118, 211, 315, 343, 346, 368, 1256, 1303
Sau3AI	GATC	7 cut(s)	48, 66, 83, 306, 408, 444, 985
Sau96I	GGNCC	3 cut(s)	154, 1110, 1280
ScaI	AGTACT	1 cut(s)	239
SchI	GAGTC	1 cut(s)	1325
ScrFI	CCNGG	6 cut(s)	296, 507, 969, 970, 1133, 1134
SduI	GDGCHC	5 cut(s)	115, 270, 276, 465, 868
SfaNI	GCATC	6 cut(s)	39, 250, 354, 363, 393, 424
SfcI	CTRYAG	2 cut(s)	368, 597
SfoI	GGCGCC	1 cut(s)	91
Sfr274I	CTCGAG	4 cut(s)	71, 275, 500, 1268
SgrAI	CRCCGGYG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	154
SlaI	CTCGAG	4 cut(s)	71, 275, 500, 1268
SmaI	CCCGGG	2 cut(s)	970, 1134
SmlI	CTYRAG	6 cut(s)	71, 146, 275, 464, 500, 1268
SmoI	CTYRAG	6 cut(s)	71, 146, 275, 464, 500, 1268
Sse9I	AATT	9 cut(s)	591, 607, 630, 712, 973, 1071, 1098, 1346, 1362
SsiI	CCGC	9 cut(s)	76, 115, 118, 178, 314, 333, 345, 1358, 1368
SspDI	GGCGCC	1 cut(s)	89
SspI	AATATT	1 cut(s)	662
SspMI	CTAG	2 cut(s)	740, 1179
StyD4I	CCNGG	6 cut(s)	294, 505, 967, 968, 1131, 1132
TaaI	ACNGT	4 cut(s)	110, 139, 304, 533
TaiI	ACGT	3 cut(s)	105, 222, 765
TaqI	TCGA	8 cut(s)	72, 186, 276, 387, 501, 853, 984, 1269
TasI	AATT	9 cut(s)	591, 607, 630, 712, 973, 1071, 1098, 1346, 1362
TatI	WGTACW	2 cut(s)	237, 749
TauI	GCSGC	3 cut(s)	120, 317, 348
TfiI	GAWTC	2 cut(s)	5, 999
Tru1I	TTAA	1 cut(s)	1080
Tru9I	TTAA	1 cut(s)	1080
TseFI	GTSAC	2 cut(s)	758, 1046
TseI	GCWGC	5 cut(s)	210, 342, 367, 1255, 1302
Tsp45I	GTSAC	2 cut(s)	758, 1046
TspDTI	ATGAA	7 cut(s)	540, 600, 783, 1065, 1239, 1359, 1378
TspMI	CCCGGG	2 cut(s)	968, 1132
Van91I	CCANNNNNTGG	1 cut(s)	809
VpaK11BI	GGWCC	1 cut(s)	154
XagI	CCTNNNNNAGG	1 cut(s)	149
XapI	RAATTY	4 cut(s)	630, 712, 973, 1346
XceI	RCATGY	1 cut(s)	1262
XhoI	CTCGAG	4 cut(s)	71, 275, 500, 1268
XmaI	CCCGGG	2 cut(s)	968, 1132
XmiI	GTMKAC	3 cut(s)	105, 765, 891
XmnI	GAANNNNTTC	1 cut(s)	591
XspI	CTAG	2 cut(s)	740, 1179
ZraI	GACGTC	1 cut(s)	103
ZrmI	AGTACT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.