Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006246

Physical Location & Seq

Genomic Coordinates Reverse (-)

11983382 .. 11984866

Gene Structure 1485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17070.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGACTCTCCACCAGCGAAGAGCTGGAGCATCCACAGCCGACCCGAAATCATCGCAAAGTACAAGATCCTGGAGCGGGTCGGATCCGGAGCCTACTCCGATGTGTACCGAGCCATCCGGCTCTCCGACAACATCACCGTCGCGCTCAAGGAGGTCCACGACTACCAGTCGGCGTTCCGAGAAATCGAGGCCCTCCAGGCCCTCCACAGCTGTGCCAACGTCGTCATTTTGTACGAGTACTTTTGGCGCGAGGACGAGGACGCCGTGCTGGTCCTGGAGTTCTTGACGACTGACCTCGCCACTGTCATCAGGAGCGCCAAGAAACGAGAGGGCGGGATTGAGTGCGGCGAGGTCAAGCGGTGGATGCTGCAAATCCTATCGGGGGTCGACGCGTGTCATCGGAATATGGTCGTCCACCGCGATTTGAAGCCCTGTAATTTGTTGATTGGGGAAGATGGAGTTCTGAAGCTGGCTGATTTTGGTCAGGCAAGGATACTCTTGGAGCCTGGATATGTTCCTGATGACGAAAACCCACAACTGTTTGAACGAAGCGCTCCTATTCAGAGTACCTTTCAGCCACCTGAAGTGATTCCCGAAACAGAAGAGTCATGTGAAGAAGGGTACAGAGCTCAAGAACAGGGAACTATGAGCAAAGAGGAATATTTTCGAGTGTTAGATGAGGTCAAGGCGAAAGGTTTGGATAAAGATACAAACGTTCCTGATGGAGATACATCTTGTCTAGCAACATGTACAGCAAGTGACGTAGACGATGATCTTTTCAGGGGTTCCTATTCTTATGAGGCAGAGGGTGGAGATGATAGAAATGGAGCTCTGACATCCTGTGTTGGGACTCGATGGTTCAGAGCGCCAGAACTGCTCTACGGATCCATCTTTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008047 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009893 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019827 GO:0019887 GO:0019912 GO:0022622 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0097472 GO:0098727 GO:0098772 GO:0099402 GO:0140096 GO:1901564 GO:1904029 GO:1904031 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

300

Amino Acids

33.54

Weight (kDa)

4.65

Isoelectric Point (pI)

54.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28980 AT4G28980 AT4G28980
fragaria_vesca	FvH4_1g05460
malus_domestica	MD02G1062700.v1.1 MD15G1190500.v1.1
prunus_persica	Prupe.7G226600_v2.0.a1
pyrus_communis	pycom02g04310 pycom02g04320 pycom15g17070
rosa_chinensis	RchiOBHm_Chr2g0091141
rosa_laevigata	RLG00000006226 RLG00000014960 RLG00000016185
rosa_multiflora	Rmu_co8390673.1_g000001 Rmu_sc0002343.1_g000049 Rmu_sc0004851.1_g000011
rosa_roxburghii	Rroxscaffold_2G00150500 Rroxscaffold_5G00373520 Rroxscaffold_6G00397830 Rroxscaffold_7G00210230
rosa_rugosa	Rorug02G0013600
rosa_samantha	Rh2AG059600 Rh2BG058300 Rh2CG060100 Rh2DG058900
rosa_wichuraiana	Rw2G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	76
AccI	GTMKAC	2 cut(s)	387, 765
AccII	CGCG	4 cut(s)	143, 249, 392, 420
AccIII	TCCGGA	1 cut(s)	86
AciI	CCGC	5 cut(s)	76, 333, 345, 358, 418
AclI	AACGTT	1 cut(s)	714
AclWI	GGATC	5 cut(s)	61, 78, 91, 879, 892
AcuI	CTGAAG	2 cut(s)	485, 603
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	7 cut(s)	62, 107, 233, 239, 568, 623, 751
AfeI	AGCGCT	1 cut(s)	553
AfiI	CCNNNNNNNGG	3 cut(s)	76, 382, 846
AflIII	ACRYGT	2 cut(s)	390, 746
AgsI	TTSAA	2 cut(s)	427, 545
AhdI	GACNNNNNGTC	1 cut(s)	166
AjnI	CCWGG	4 cut(s)	69, 195, 273, 505
AleI	CACNNNNGTG	1 cut(s)	210
AluBI	AGCT	5 cut(s)	24, 210, 469, 629, 830
AluI	AGCT	5 cut(s)	24, 210, 469, 629, 830
Alw21I	GWGCWC	2 cut(s)	631, 832
AlwI	GGATC	5 cut(s)	61, 78, 91, 879, 892
Aor13HI	TCCGGA	1 cut(s)	86
Aor51HI	AGCGCT	1 cut(s)	553
AoxI	GGCC	2 cut(s)	189, 198
ApeKI	GCWGC	1 cut(s)	367
Asp700I	GAANNNNTTC	2 cut(s)	588, 663
AspLEI	GCGC	5 cut(s)	145, 249, 317, 554, 868
AspS9I	GGNCC	4 cut(s)	154, 190, 199, 271
AsuHPI	GGTGA	1 cut(s)	127
AvaII	GGWCC	2 cut(s)	154, 271
BaeI	ACNNNNGTAYC	2 cut(s)	699, 732
BamHI	GGATCC	2 cut(s)	83, 884
BanII	GRGCYC	2 cut(s)	631, 832
Bbv12I	GWGCWC	2 cut(s)	631, 832
BbvI	GCAGC	1 cut(s)	354
BccI	CCATC	5 cut(s)	122, 449, 716, 849, 896
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	4 cut(s)	71, 197, 275, 507
BciVI	GTATCC	1 cut(s)	486
BfaI	CTAG	2 cut(s)	740, 898
BfoI	RGCGCY	3 cut(s)	318, 555, 869
BfuI	GTATCC	1 cut(s)	486
BglI	GCCNNNNNGGC	1 cut(s)	197
BisI	GCNGC	2 cut(s)	346, 368
BlsI	GCNGC	2 cut(s)	347, 369
BmcAI	AGTACT	1 cut(s)	239
Bme1390I	CCNGG	4 cut(s)	71, 197, 275, 507
Bme18I	GGWCC	2 cut(s)	154, 271
BmeRI	GACNNNNNGTC	1 cut(s)	166
BmgT120I	GGNCC	4 cut(s)	154, 190, 199, 271
BmiI	GGNNCC	5 cut(s)	85, 91, 504, 787, 886
BmrFI	CCNGG	4 cut(s)	71, 197, 275, 507
BmsI	GCATC	2 cut(s)	39, 354
BoxI	GACNNNNGTC	1 cut(s)	393
BpmI	CTGGAG	4 cut(s)	46, 92, 179, 296
BpuEI	CTTGAG	2 cut(s)	131, 615
BsaHI	GRCGYC	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 382, 846
Bse1I	ACTGG	1 cut(s)	166
BseAI	TCCGGA	1 cut(s)	86
BseBI	CCWGG	4 cut(s)	71, 197, 275, 507
BseGI	GGATG	4 cut(s)	30, 114, 369, 836
BseLI	CCNNNNNNNGG	3 cut(s)	76, 382, 846
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	354
Bsh1236I	CGCG	4 cut(s)	143, 249, 392, 420
BshFI	GGCC	2 cut(s)	191, 200
BsiHKAI	GWGCWC	2 cut(s)	631, 832
BsiSI	CCGG	2 cut(s)	87, 118
BslFI	GGGAC	1 cut(s)	862
BslI	CCNNNNNNNGG	3 cut(s)	76, 382, 846
BsmFI	GGGAC	1 cut(s)	862
BsnI	GGCC	2 cut(s)	191, 200
Bsp1286I	GDGCHC	2 cut(s)	631, 832
Bsp13I	TCCGGA	1 cut(s)	86
Bsp1407I	TGTACA	1 cut(s)	749
Bsp143I	GATC	4 cut(s)	66, 83, 772, 884
BspACI	CCGC	5 cut(s)	76, 333, 345, 358, 418
BspANI	GGCC	2 cut(s)	191, 200
BspEI	TCCGGA	1 cut(s)	86
BspFNI	CGCG	4 cut(s)	143, 249, 392, 420
BspLI	GGNNCC	5 cut(s)	85, 91, 504, 787, 886
BspPI	GGATC	5 cut(s)	61, 78, 91, 879, 892
BspQI	GCTCTTC	1 cut(s)	14
BsrBI	CCGCTC	1 cut(s)	76
BsrGI	TGTACA	1 cut(s)	749
BsrI	ACTGG	1 cut(s)	166
BssMI	GATC	4 cut(s)	66, 83, 772, 884
BssNI	GRCGYC	1 cut(s)	261
Bst2UI	CCWGG	4 cut(s)	71, 197, 275, 507
Bst4CI	ACNGT	3 cut(s)	139, 304, 540
Bst6I	CTCTTC	2 cut(s)	14, 597
BstACI	GRCGYC	1 cut(s)	261
BstAUI	TGTACA	1 cut(s)	749
BstC8I	GCNNGC	1 cut(s)	471
BstF5I	GGATG	4 cut(s)	30, 114, 369, 836
BstFNI	CGCG	4 cut(s)	143, 249, 392, 420
BstH2I	RGCGCY	3 cut(s)	318, 555, 869
BstHHI	GCGC	5 cut(s)	145, 249, 317, 554, 868
BstKTI	GATC	4 cut(s)	69, 86, 775, 887
BstMBI	GATC	4 cut(s)	66, 83, 772, 884
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 197, 364, 874
BstNI	CCWGG	4 cut(s)	71, 197, 275, 507
BstNSI	RCATGY	1 cut(s)	750
BstPAI	GACNNNNGTC	1 cut(s)	393
BstSCI	CCNGG	4 cut(s)	69, 195, 273, 505
BstUI	CGCG	4 cut(s)	143, 249, 392, 420
BstV1I	GCAGC	1 cut(s)	354
BstX2I	RGATCY	3 cut(s)	66, 83, 884
BstYI	RGATCY	3 cut(s)	66, 83, 884
BsuI	GTATCC	1 cut(s)	486
BsuRI	GGCC	2 cut(s)	191, 200
BtgZI	GCGATG	1 cut(s)	37
BtsCI	GGATG	4 cut(s)	30, 114, 369, 836
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	471
CfoI	GCGC	5 cut(s)	145, 249, 317, 554, 868
Cfr13I	GGNCC	4 cut(s)	154, 190, 199, 271
CseI	GACGC	2 cut(s)	269, 398
Csp6I	GTAC	7 cut(s)	61, 106, 232, 238, 567, 622, 750
CviAII	CATG	2 cut(s)	609, 747
CviQI	GTAC	7 cut(s)	61, 106, 232, 238, 567, 622, 750
DpnI	GATC	4 cut(s)	68, 85, 774, 886
DpnII	GATC	4 cut(s)	66, 83, 772, 884
DriI	GACNNNNNGTC	1 cut(s)	166
Eam1104I	CTCTTC	2 cut(s)	14, 597
Eam1105I	GACNNNNNGTC	1 cut(s)	166
EarI	CTCTTC	2 cut(s)	14, 597
Ecl136II	GAGCTC	2 cut(s)	629, 830
Eco24I	GRGCYC	2 cut(s)	631, 832
Eco47I	GGWCC	2 cut(s)	154, 271
Eco47III	AGCGCT	1 cut(s)	553
Eco53kI	GAGCTC	2 cut(s)	629, 830
Eco57I	CTGAAG	2 cut(s)	485, 603
EcoICRI	GAGCTC	2 cut(s)	629, 830
EcoO109I	RGGNCCY	2 cut(s)	190, 199
EcoRII	CCWGG	4 cut(s)	69, 195, 273, 505
EcoT38I	GRGCYC	2 cut(s)	631, 832
FaeI	CATG	2 cut(s)	612, 750
FaiI	YATR	6 cut(s)	407, 513, 610, 647, 748, 798
FaqI	GGGAC	1 cut(s)	862
FatI	CATG	2 cut(s)	608, 746
FauI	CCCGC	2 cut(s)	69, 326
FblI	GTMKAC	2 cut(s)	387, 765
Fnu4HI	GCNGC	2 cut(s)	346, 368
FokI	GGATG	4 cut(s)	17, 101, 376, 823
FriOI	GRGCYC	2 cut(s)	631, 832
Fsp4HI	GCNGC	2 cut(s)	346, 368
FspBI	CTAG	2 cut(s)	740, 898
GlaI	GCGC	5 cut(s)	144, 248, 316, 553, 867
GluI	GCNGC	2 cut(s)	346, 368
GsuI	CTGGAG	4 cut(s)	46, 92, 179, 296
HaeII	RGCGCY	3 cut(s)	318, 555, 869
HaeIII	GGCC	2 cut(s)	191, 200
HapII	CCGG	2 cut(s)	87, 118
HgaI	GACGC	2 cut(s)	269, 398
HhaI	GCGC	5 cut(s)	145, 249, 317, 554, 868
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	612, 750
Hin6I	GCGC	5 cut(s)	143, 247, 315, 552, 866
HinP1I	GCGC	5 cut(s)	143, 247, 315, 552, 866
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	4 cut(s)	5, 589, 605, 850
HpaII	CCGG	2 cut(s)	87, 118
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	5 cut(s)	106, 157, 388, 415, 766
Hpy188I	TCNGA	9 cut(s)	83, 100, 127, 179, 402, 465, 564, 834, 863
Hpy188III	TCNNGA	7 cut(s)	87, 283, 310, 518, 593, 632, 719
Hpy8I	GTNNAC	5 cut(s)	106, 157, 388, 415, 766
Hpy99I	CGWCG	3 cut(s)	143, 224, 392
HpyAV	CCTTC	1 cut(s)	611
HpyCH4III	ACNGT	3 cut(s)	139, 304, 540
HpyCH4IV	ACGT	3 cut(s)	219, 714, 762
HpyCH4V	TGCA	1 cut(s)	370
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 197, 364, 874
HpySE526I	ACGT	3 cut(s)	219, 714, 762
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	612, 750
HspAI	GCGC	5 cut(s)	143, 247, 315, 552, 866
Kpn2I	TCCGGA	1 cut(s)	86
Kzo9I	GATC	4 cut(s)	66, 83, 772, 884
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	7 cut(s)	27, 73, 89, 312, 502, 559, 827
Lsp1109I	GCAGC	1 cut(s)	354
LweI	GCATC	2 cut(s)	39, 354
MaeI	CTAG	2 cut(s)	740, 898
MaeII	ACGT	3 cut(s)	219, 714, 762
MaeIII	GTNAC	1 cut(s)	758
MalI	GATC	4 cut(s)	68, 85, 774, 886
MbiI	CCGCTC	1 cut(s)	76
MboI	GATC	4 cut(s)	66, 83, 772, 884
MboII	GAAGA	4 cut(s)	31, 464, 614, 626
MflI	RGATCY	3 cut(s)	66, 83, 884
MhlI	GDGCHC	2 cut(s)	631, 832
MluCI	AATT	1 cut(s)	436
MluI	ACGCGT	1 cut(s)	390
MlyI	GAGTC	2 cut(s)	614, 844
MmeI	TCCRAC	2 cut(s)	61, 150
MroI	TCCGGA	1 cut(s)	86
MroXI	GAANNNNTTC	2 cut(s)	588, 663
MslI	CAYNNNNRTG	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	2 cut(s)	87, 118
MspR9I	CCNGG	4 cut(s)	71, 197, 275, 507
MvaI	CCWGG	4 cut(s)	71, 197, 275, 507
MvnI	CGCG	4 cut(s)	143, 249, 392, 420
MwoI	GCNNNNNNNGC	4 cut(s)	36, 197, 364, 874
NdeII	GATC	4 cut(s)	66, 83, 772, 884
NlaIII	CATG	2 cut(s)	612, 750
NlaIV	GGNNCC	5 cut(s)	85, 91, 504, 787, 886
NmuCI	GTSAC	1 cut(s)	758
NspI	RCATGY	1 cut(s)	750
OliI	CACNNNNGTG	1 cut(s)	210
PciI	ACATGT	1 cut(s)	746
PciSI	GCTCTTC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	2 cut(s)	261, 417
PdmI	GAANNNNTTC	2 cut(s)	588, 663
PfeI	GAWTC	1 cut(s)	589
PfoI	TCCNGGA	2 cut(s)	69, 273
PkrI	GCNGC	2 cut(s)	347, 369
PleI	GAGTC	2 cut(s)	613, 844
PpsI	GAGTC	2 cut(s)	613, 844
PscI	ACATGT	1 cut(s)	746
PshAI	GACNNNNGTC	1 cut(s)	393
Psp124BI	GAGCTC	2 cut(s)	631, 832
Psp1406I	AACGTT	1 cut(s)	714
Psp6I	CCWGG	4 cut(s)	69, 195, 273, 505
PspGI	CCWGG	4 cut(s)	69, 195, 273, 505
PspN4I	GGNNCC	5 cut(s)	85, 91, 504, 787, 886
PspPI	GGNCC	4 cut(s)	154, 190, 199, 271
PsuI	RGATCY	3 cut(s)	66, 83, 884
PvuII	CAGCTG	1 cut(s)	210
RsaI	GTAC	7 cut(s)	62, 107, 233, 239, 568, 623, 751
RsaNI	GTAC	7 cut(s)	61, 106, 232, 238, 567, 622, 750
RseI	CAYNNNNRTG	1 cut(s)	210
SacI	GAGCTC	2 cut(s)	631, 832
SalI	GTCGAC	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	14
SatI	GCNGC	2 cut(s)	346, 368
Sau3AI	GATC	4 cut(s)	66, 83, 772, 884
Sau96I	GGNCC	4 cut(s)	154, 190, 199, 271
ScaI	AGTACT	1 cut(s)	239
SchI	GAGTC	2 cut(s)	614, 844
ScrFI	CCNGG	4 cut(s)	71, 197, 275, 507
SduI	GDGCHC	2 cut(s)	631, 832
SfaNI	GCATC	2 cut(s)	39, 354
SfiI	GGCCNNNNNGGCC	1 cut(s)	197
SinI	GGWCC	2 cut(s)	154, 271
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	2 cut(s)	146, 630
SmoI	CTYRAG	2 cut(s)	146, 630
Sse9I	AATT	1 cut(s)	436
SsiI	CCGC	5 cut(s)	76, 333, 345, 358, 418
SspI	AATATT	1 cut(s)	662
SspMI	CTAG	2 cut(s)	740, 898
SstI	GAGCTC	2 cut(s)	631, 832
StyD4I	CCNGG	4 cut(s)	69, 195, 273, 505
TaaI	ACNGT	3 cut(s)	139, 304, 540
TaiI	ACGT	3 cut(s)	222, 717, 765
TaqI	TCGA	4 cut(s)	186, 387, 667, 853
TasI	AATT	1 cut(s)	436
TatI	WGTACW	3 cut(s)	60, 237, 749
TauI	GCSGC	1 cut(s)	348
TfiI	GAWTC	1 cut(s)	589
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	758
TseI	GCWGC	1 cut(s)	367
Tsp45I	GTSAC	1 cut(s)	758
TspGWI	ACGGA	1 cut(s)	897
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	2 cut(s)	154, 271
XceI	RCATGY	1 cut(s)	750
XcmI	CCANNNNNNNNNTGG	1 cut(s)	21
XmiI	GTMKAC	2 cut(s)	387, 765
XmnI	GAANNNNTTC	2 cut(s)	588, 663
XspI	CTAG	2 cut(s)	740, 898
ZrmI	AGTACT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.