Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006246

Physical Location & Seq

Genomic Coordinates Reverse (-)

60484776 .. 60499796

Gene Structure 15021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGAAGAGCATTTGGCTTTTGGAAGAGTGGATAATCCTGCAGGTCGGGTGAACCAAGGTGGTGATCGAGCTGCGGCCCTTGCTTCGGTGGTTGGAAGCAAAGCTTTGCGGGTCGGATCCGGCGCCTACTCCTACGTCTACCTCGCCCGCCGTCTCACCGACAACCTTAGCGTCGCTCTTAAGGAGGTCCACGACTACCGGTCGGCCTTTCGCGAAATCGAGGCGCTCGGACGCTCCACGACCGCCCCAACGTCTTCGTTTTGTACGAGTACTTCGGCGCGAGGACTAGGACGCCGTGCTCGTTCTCGAGTTTCGGCCACCGATCGAGTGGCGAAGAAGAAGGAGGGCGGGATGGGTTACGGCGAGTGGCAGCGACGTGTGCATGACGCATACAAGGCGCACAATACCTCTCAACCCTATTTCTGTGCGTTGGACTCACGTTACGTTTCAGAGTCCATCGCGGGGCCCACCCACCAACTACGGTACACAACGGTCTTCGTCGGTCCCAGAGAACTAATTTACGAGAAAAGCTTTCGGAGCTCACCTACCATGCGAACCTTACCCAGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008047 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009893 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019827 GO:0019887 GO:0019912 GO:0022622 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0097472 GO:0098727 GO:0098772 GO:0099402 GO:0140096 GO:1901564 GO:1904029 GO:1904031 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

190

Amino Acids

20.93

Weight (kDa)

10.04

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28980 AT4G28980 AT4G28980
fragaria_vesca	FvH4_1g05460
malus_domestica	MD02G1062700.v1.1 MD15G1190500.v1.1
prunus_persica	Prupe.7G226600_v2.0.a1
pyrus_communis	pycom02g04310 pycom02g04320 pycom15g17070
rosa_chinensis	RchiOBHm_Chr2g0091141
rosa_laevigata	RLG00000006226 RLG00000014960 RLG00000016185
rosa_multiflora	Rmu_co8390673.1_g000001 Rmu_sc0002343.1_g000049 Rmu_sc0004851.1_g000011
rosa_roxburghii	Rroxscaffold_2G00150500 Rroxscaffold_5G00373520 Rroxscaffold_6G00397830 Rroxscaffold_7G00210230
rosa_rugosa	Rorug02G0013600
rosa_samantha	Rh2AG059600 Rh2BG058300 Rh2CG060100 Rh2DG058900
rosa_wichuraiana	Rw2G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	32
AccB1I	GGYRCC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	3 cut(s)	213, 280, 461
AciI	CCGC	6 cut(s)	74, 109, 148, 243, 348, 461
AclWI	GGATC	2 cut(s)	111, 124
AcoI	YGGCCR	1 cut(s)	315
AcyI	GRCGYC	2 cut(s)	123, 292
AfaI	GTAC	3 cut(s)	265, 271, 485
AfiI	CCNNNNNNNGG	2 cut(s)	85, 462
AflII	CTTAAG	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	376
AgeI	ACCGGT	1 cut(s)	198
AhdI	GACNNNNNGTC	1 cut(s)	199
AjiI	CACGTC	1 cut(s)	377
AluBI	AGCT	4 cut(s)	71, 104, 531, 540
AluI	AGCT	4 cut(s)	71, 104, 531, 540
Alw21I	GWGCWC	2 cut(s)	301, 542
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	2 cut(s)	111, 124
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	4 cut(s)	75, 204, 315, 464
ApaI	GGGCCC	1 cut(s)	468
ApeKI	GCWGC	2 cut(s)	71, 370
AsiGI	ACCGGT	1 cut(s)	198
AspLEI	GCGC	4 cut(s)	125, 226, 280, 400
AspS9I	GGNCC	5 cut(s)	76, 187, 464, 465, 503
AsuHPI	GGTGA	4 cut(s)	61, 74, 148, 534
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	2 cut(s)	187, 503
BaeGI	GKGCMC	1 cut(s)	468
BamHI	GGATCC	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	2 cut(s)	468, 542
BarI	GAAGNNNNNNTAC	2 cut(s)	256, 288
BbsI	GAAGAC	2 cut(s)	246, 487
Bbv12I	GWGCWC	2 cut(s)	301, 542
BbvI	GCAGC	2 cut(s)	58, 382
BccI	CCATC	2 cut(s)	346, 464
BceAI	ACGGC	3 cut(s)	135, 279, 376
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	39
BfoI	RGCGCY	2 cut(s)	126, 227
BfrI	CTTAAG	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	72, 75, 371
BlsI	GCNGC	3 cut(s)	73, 76, 372
BmcAI	AGTACT	1 cut(s)	271
Bme18I	GGWCC	2 cut(s)	187, 503
BmeRI	GACNNNNNGTC	1 cut(s)	199
BmeT110I	CYCGRG	1 cut(s)	306
BmgBI	CACGTC	1 cut(s)	377
BmgT120I	GGNCC	5 cut(s)	76, 187, 464, 465, 503
BmiI	GGNNCC	5 cut(s)	118, 124, 465, 466, 505
BmrI	ACTGGG	1 cut(s)	558
BmuI	ACTGGG	1 cut(s)	558
BpiI	GAAGAC	2 cut(s)	246, 487
Bpu10I	CCTNAGC	1 cut(s)	167
BsaHI	GRCGYC	2 cut(s)	123, 292
BsaJI	CCNNGG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 462
Bse118I	RCCGGY	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	564
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	357
BseLI	CCNNNNNNNGG	2 cut(s)	85, 462
BseNI	ACTGG	1 cut(s)	564
BseSI	GKGCMC	1 cut(s)	468
BseXI	GCAGC	2 cut(s)	58, 382
Bsh1236I	CGCG	3 cut(s)	213, 280, 461
Bsh1285I	CGRYCG	3 cut(s)	203, 243, 325
BshFI	GGCC	4 cut(s)	77, 206, 317, 466
BshNI	GGYRCC	1 cut(s)	122
BshTI	ACCGGT	1 cut(s)	198
BsiEI	CGRYCG	3 cut(s)	203, 243, 325
BsiHKAI	GWGCWC	2 cut(s)	301, 542
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	2 cut(s)	120, 199
BslFI	GGGAC	1 cut(s)	489
BslI	CCNNNNNNNGG	2 cut(s)	85, 462
BsmAI	GTCTC	1 cut(s)	158
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	489
BsnI	GGCC	4 cut(s)	77, 206, 317, 466
BsoBI	CYCGRG	1 cut(s)	306
Bsp120I	GGGCCC	1 cut(s)	464
Bsp1286I	GDGCHC	3 cut(s)	301, 468, 542
Bsp143I	GATC	3 cut(s)	64, 116, 322
Bsp68I	TCGCGA	1 cut(s)	213
BspACI	CCGC	6 cut(s)	74, 109, 148, 243, 348, 461
BspANI	GGCC	4 cut(s)	77, 206, 317, 466
BspFNI	CGCG	3 cut(s)	213, 280, 461
BspLI	GGNNCC	5 cut(s)	118, 124, 465, 466, 505
BspMAI	CTGCAG	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	32
BspPI	GGATC	2 cut(s)	111, 124
BspT107I	GGYRCC	1 cut(s)	122
BspTI	CTTAAG	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	564
BssAI	RCCGGY	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	3 cut(s)	64, 116, 322
BssNI	GRCGYC	2 cut(s)	123, 292
BssT1I	CCWWGG	1 cut(s)	55
Bst4CI	ACNGT	2 cut(s)	483, 493
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	2 cut(s)	123, 292
BstAFI	CTTAAG	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	357
BstFNI	CGCG	3 cut(s)	213, 280, 461
BstH2I	RGCGCY	2 cut(s)	126, 227
BstHHI	GCGC	4 cut(s)	125, 226, 280, 400
BstKTI	GATC	3 cut(s)	67, 119, 325
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	3 cut(s)	64, 116, 322
BstMCI	CGRYCG	3 cut(s)	203, 243, 325
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 379, 395, 537
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	468
BstUI	CGCG	3 cut(s)	213, 280, 461
BstV1I	GCAGC	2 cut(s)	58, 382
BstV2I	GAAGAC	2 cut(s)	246, 487
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BsuRI	GGCC	4 cut(s)	77, 206, 317, 466
BtgZI	GCGATG	1 cut(s)	442
BtrI	CACGTC	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	357
BtsIMutI	CAGTG	1 cut(s)	571
BtuMI	TCGCGA	1 cut(s)	213
BveI	ACCTGC	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	148
CfoI	GCGC	4 cut(s)	125, 226, 280, 400
Cfr10I	RCCGGY	1 cut(s)	198
Cfr13I	GGNCC	5 cut(s)	76, 187, 464, 465, 503
CseI	GACGC	4 cut(s)	160, 240, 300, 395
Csp6I	GTAC	3 cut(s)	264, 270, 484
CspAI	ACCGGT	1 cut(s)	198
CviAII	CATG	2 cut(s)	383, 550
CviJI	RGCY	9 cut(s)	17, 71, 77, 104, 206, 317, 466, 531, 540
CviKI_1	RGCY	9 cut(s)	17, 71, 77, 104, 206, 317, 466, 531, 540
CviQI	GTAC	3 cut(s)	264, 270, 484
DdeI	CTNAG	1 cut(s)	167
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	3 cut(s)	66, 118, 324
DpnII	GATC	3 cut(s)	64, 116, 322
DriI	GACNNNNNGTC	1 cut(s)	199
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	19
Eam1105I	GACNNNNNGTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	19
Ecl136II	GAGCTC	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	55
Eco24I	GRGCYC	2 cut(s)	468, 542
Eco47I	GGWCC	2 cut(s)	187, 503
Eco53kI	GAGCTC	1 cut(s)	540
Eco88I	CYCGRG	1 cut(s)	306
EcoICRI	GAGCTC	1 cut(s)	540
EcoO109I	RGGNCCY	1 cut(s)	464
EcoT14I	CCWWGG	1 cut(s)	55
EcoT38I	GRGCYC	2 cut(s)	468, 542
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	55
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	2 cut(s)	386, 553
FaiI	YATR	3 cut(s)	384, 391, 551
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	2 cut(s)	382, 549
FauI	CCCGC	4 cut(s)	102, 155, 341, 454
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	3 cut(s)	72, 75, 371
FokI	GGATG	1 cut(s)	364
FriOI	GRGCYC	2 cut(s)	468, 542
Fsp4HI	GCNGC	3 cut(s)	72, 75, 371
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	4 cut(s)	124, 225, 279, 399
GluI	GCNGC	3 cut(s)	72, 75, 371
HaeII	RGCGCY	2 cut(s)	126, 227
HaeIII	GGCC	4 cut(s)	77, 206, 317, 466
HapII	CCGG	2 cut(s)	120, 199
HgaI	GACGC	4 cut(s)	160, 240, 300, 395
HhaI	GCGC	4 cut(s)	125, 226, 280, 400
Hin1I	GRCGYC	2 cut(s)	123, 292
Hin1II	CATG	2 cut(s)	386, 553
Hin6I	GCGC	4 cut(s)	123, 224, 278, 398
HinP1I	GCGC	4 cut(s)	123, 224, 278, 398
HindIII	AAGCTT	2 cut(s)	102, 529
HinfI	GANTC	2 cut(s)	434, 452
HpaII	CCGG	2 cut(s)	120, 199
HphI	GGTGA	4 cut(s)	61, 74, 148, 534
Hpy166II	GTNNAC	4 cut(s)	52, 139, 190, 486
Hpy188I	TCNGA	4 cut(s)	116, 230, 451, 537
Hpy188III	TCNNGA	2 cut(s)	212, 306
Hpy8I	GTNNAC	4 cut(s)	52, 139, 190, 486
Hpy99I	CGWCG	3 cut(s)	176, 378, 503
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	2 cut(s)	483, 493
HpyCH4IV	ACGT	5 cut(s)	135, 251, 376, 439, 444
HpyCH4V	TGCA	2 cut(s)	41, 382
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 379, 395, 537
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	5 cut(s)	135, 251, 376, 439, 444
Hsp92I	GRCGYC	2 cut(s)	123, 292
Hsp92II	CATG	2 cut(s)	386, 553
HspAI	GCGC	4 cut(s)	123, 224, 278, 398
KasI	GGCGCC	1 cut(s)	122
Kzo9I	GATC	3 cut(s)	64, 116, 322
LmnI	GCTCC	2 cut(s)	239, 537
LpnPI	CCDG	5 cut(s)	27, 51, 133, 212, 520
Lsp1109I	GCAGC	2 cut(s)	58, 382
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	5 cut(s)	135, 251, 376, 439, 444
MaeIII	GTNAC	2 cut(s)	356, 440
MalI	GATC	3 cut(s)	66, 118, 324
MboI	GATC	3 cut(s)	64, 116, 322
MboII	GAAGA	6 cut(s)	17, 36, 246, 346, 349, 487
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	3 cut(s)	301, 468, 542
MluCI	AATT	1 cut(s)	516
Mly113I	GGCGCC	1 cut(s)	123
MlyI	GAGTC	2 cut(s)	428, 461
MmeI	TCCRAC	3 cut(s)	73, 94, 411
MnlI	CCTC	6 cut(s)	152, 178, 214, 275, 337, 418
MseI	TTAA	1 cut(s)	180
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	2 cut(s)	120, 199
MvnI	CGCG	3 cut(s)	213, 280, 461
MwoI	GCNNNNNNNGC	4 cut(s)	80, 379, 395, 537
NarI	GGCGCC	1 cut(s)	123
NdeII	GATC	3 cut(s)	64, 116, 322
NlaIII	CATG	2 cut(s)	386, 553
NlaIV	GGNNCC	5 cut(s)	118, 124, 465, 466, 505
NruI	TCGCGA	1 cut(s)	213
PaeR7I	CTCGAG	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	2 cut(s)	263, 298
PinAI	ACCGGT	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	73, 76, 372
Ple19I	CGATCG	1 cut(s)	325
PleI	GAGTC	2 cut(s)	428, 460
PluTI	GGCGCC	1 cut(s)	126
PpsI	GAGTC	2 cut(s)	428, 460
Psp124BI	GAGCTC	1 cut(s)	542
PspN4I	GGNNCC	5 cut(s)	118, 124, 465, 466, 505
PspOMI	GGGCCC	1 cut(s)	464
PspPI	GGNCC	5 cut(s)	76, 187, 464, 465, 503
PstI	CTGCAG	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	116
PvuI	CGATCG	1 cut(s)	325
RruI	TCGCGA	1 cut(s)	213
RsaI	GTAC	3 cut(s)	265, 271, 485
RsaNI	GTAC	3 cut(s)	264, 270, 484
SacI	GAGCTC	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	3 cut(s)	72, 75, 371
Sau3AI	GATC	3 cut(s)	64, 116, 322
Sau96I	GGNCC	5 cut(s)	76, 187, 464, 465, 503
SbfI	CCTGCAGG	1 cut(s)	43
ScaI	AGTACT	1 cut(s)	271
SchI	GAGTC	2 cut(s)	428, 461
SdaI	CCTGCAGG	1 cut(s)	43
SduI	GDGCHC	3 cut(s)	301, 468, 542
SfcI	CTRYAG	1 cut(s)	39
SfoI	GGCGCC	1 cut(s)	124
Sfr274I	CTCGAG	1 cut(s)	306
SinI	GGWCC	2 cut(s)	187, 503
SlaI	CTCGAG	1 cut(s)	306
SmlI	CTYRAG	2 cut(s)	179, 306
SmoI	CTYRAG	2 cut(s)	179, 306
Sse8387I	CCTGCAGG	1 cut(s)	43
Sse9I	AATT	1 cut(s)	516
SsiI	CCGC	6 cut(s)	74, 109, 148, 243, 348, 461
SspDI	GGCGCC	1 cut(s)	122
SspMI	CTAG	1 cut(s)	287
SstI	GAGCTC	1 cut(s)	542
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	483, 493
TaiI	ACGT	5 cut(s)	138, 254, 379, 442, 447
TaqI	TCGA	4 cut(s)	67, 219, 307, 325
TaqII	GACCGA	1 cut(s)	491
TasI	AATT	1 cut(s)	516
TatI	WGTACW	1 cut(s)	269
TauI	GCSGC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	571
TseI	GCWGC	2 cut(s)	71, 370
TspRI	CASTG	1 cut(s)	571
Vha464I	CTTAAG	1 cut(s)	179
VpaK11BI	GGWCC	2 cut(s)	187, 503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XhoI	CTCGAG	1 cut(s)	306
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	1 cut(s)	287
ZrmI	AGTACT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.