Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006246

Physical Location & Seq

Genomic Coordinates Reverse (-)

5367279 .. 5370906

Gene Structure 3628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006226

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTTCTTGCTACTTGCCGCCATGTCAGTTTTGGCATTGGAACCTTTTGTGTTTATCCTCAAACGGGTCGGATTCGGCGCCTACTCCGAAGTCTACCGCGCCCGCCGTCTCGCCGACAACCTCAACGTCGCTCTCAAGGAGGTCCACGACTACCAGTCGGCCTTCTGTGAAATCGAGGCTCTCCAGCCGCTCCACGGCTGCCCCAACGTCGTCGTTTTGTACGAGTACTTCCGAAGTGACGACGAGGTCGCCGTGGTCGTGCTCGAGTTTCTGGCCAGTGATCTGGAGACTGATCAGAGCGGCAAAGAAGAAGGAGGGCGGGATTGGCTGCTGCGAGGTCAAGAAATGGATGCTGCAGATGCTGTCTGGGATCAACGCGTGTCATTGGAATATGATCGTGCATCTGGATTTGAAGCCGAGCAATTTGTTGATTGGGGAGGACGACTACCGTTGGCATCGCCGCATTGTTTCGGTGCTGGCTGCCAGACGGGTACTTCAACCCCCAGGGCTGAGGTCTGCAAGGAAGGGGTTCGGCTTGGGGTCTATGGCAGGATGATCCGGCAACTGGGTCGAGCGTCTGGGCACACGCATGGTCTGAGCAAAGGTGCGGGCTCGTGGGACTCAGGCAAGTCGGCGAAAGCTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008047 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009893 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019827 GO:0019887 GO:0019912 GO:0022622 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0097472 GO:0098727 GO:0098772 GO:0099402 GO:0140096 GO:1901564 GO:1904029 GO:1904031 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

216

Amino Acids

23.67

Weight (kDa)

5.29

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	20 - 94	1.6e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28980 AT4G28980 AT4G28980
fragaria_vesca	FvH4_1g05460
malus_domestica	MD02G1062700.v1.1 MD15G1190500.v1.1
prunus_persica	Prupe.7G226600_v2.0.a1
pyrus_communis	pycom02g04310 pycom02g04320 pycom15g17070
rosa_chinensis	RchiOBHm_Chr2g0091141
rosa_laevigata	RLG00000006226 RLG00000014960 RLG00000016185
rosa_multiflora	Rmu_co8390673.1_g000001 Rmu_sc0002343.1_g000049 Rmu_sc0004851.1_g000011
rosa_roxburghii	Rroxscaffold_2G00150500 Rroxscaffold_5G00373520 Rroxscaffold_6G00397830 Rroxscaffold_7G00210230
rosa_rugosa	Rorug02G0013600
rosa_samantha	Rh2AG059600 Rh2BG058300 Rh2CG060100 Rh2DG058900
rosa_wichuraiana	Rw2G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	77
AccBSI	CCGCTC	2 cut(s)	190, 300
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	2 cut(s)	99, 378
AciI	CCGC	8 cut(s)	18, 97, 103, 188, 300, 319, 461, 608
AclWI	GGATC	2 cut(s)	378, 550
AcoI	YGGCCR	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	3 cut(s)	221, 227, 493
AfiI	CCNNNNNNNGG	3 cut(s)	64, 194, 565
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	413, 498
AhdI	GACNNNNNGTC	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	503
AluBI	AGCT	1 cut(s)	641
AluI	AGCT	1 cut(s)	641
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	2 cut(s)	113, 281
AlwI	GGATC	2 cut(s)	378, 550
AlwNI	CAGNNNCTG	1 cut(s)	362
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	2 cut(s)	159, 273
ApeKI	GCWGC	5 cut(s)	198, 328, 331, 353, 480
Asp700I	GAANNNNTTC	1 cut(s)	528
AspLEI	GCGC	2 cut(s)	80, 101
AspS9I	GGNCC	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	585
BalI	TGGCCA	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	614
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
BauI	CACGAG	1 cut(s)	613
Bbv12I	GWGCWC	1 cut(s)	264
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	5 cut(s)	185, 315, 318, 340, 467
BceAI	ACGGC	3 cut(s)	90, 211, 236
BcgI	CGANNNNNNTGC	2 cut(s)	551, 585
BciT130I	CCWGG	1 cut(s)	505
BclI	TGATCA	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	113, 281
BfaI	CTAG	1 cut(s)	646
BfmI	CTRYAG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	9 cut(s)	18, 188, 199, 301, 329, 332, 354, 461, 481
BlsI	GCNGC	9 cut(s)	19, 189, 200, 302, 330, 333, 355, 462, 482
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	505
Bme18I	GGWCC	1 cut(s)	142
BmeRI	GACNNNNNGTC	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	42, 79
BmrFI	CCNGG	1 cut(s)	505
BmrI	ACTGGG	1 cut(s)	575
BmsI	GCATC	4 cut(s)	340, 349, 410, 464
BmuI	ACTGGG	1 cut(s)	575
BpmI	CTGGAG	2 cut(s)	167, 305
Bpu10I	CCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	4 cut(s)	193, 252, 503, 504
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 194, 565
Bse1I	ACTGG	3 cut(s)	154, 276, 570
BseBI	CCWGG	1 cut(s)	505
BseDI	CCNNGG	4 cut(s)	193, 252, 503, 504
BseGI	GGATG	2 cut(s)	355, 558
BseLI	CCNNNNNNNGG	3 cut(s)	64, 194, 565
BseMII	CTCAG	3 cut(s)	501, 587, 636
BseNI	ACTGG	3 cut(s)	154, 276, 570
BseSI	GKGCMC	1 cut(s)	585
BseXI	GCAGC	5 cut(s)	185, 315, 318, 340, 467
Bsh1236I	CGCG	2 cut(s)	99, 378
BshFI	GGCC	2 cut(s)	161, 275
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	559
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	3 cut(s)	64, 194, 565
BsmAI	GTCTC	2 cut(s)	113, 281
BsmBI	CGTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	632
BsnI	GGCC	2 cut(s)	161, 275
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	3 cut(s)	264, 585, 614
Bsp143I	GATC	5 cut(s)	280, 292, 370, 394, 555
BspACI	CCGC	8 cut(s)	18, 97, 103, 188, 300, 319, 461, 608
BspANI	GGCC	2 cut(s)	161, 275
BspCNI	CTCAG	3 cut(s)	502, 588, 635
BspFNI	CGCG	2 cut(s)	99, 378
BspLI	GGNNCC	2 cut(s)	42, 79
BspMAI	CTGCAG	1 cut(s)	358
BspPI	GGATC	2 cut(s)	378, 550
BspT107I	GGYRCC	1 cut(s)	77
BsrBI	CCGCTC	2 cut(s)	190, 300
BsrI	ACTGG	3 cut(s)	154, 276, 570
BssECI	CCNNGG	4 cut(s)	193, 252, 503, 504
BssMI	GATC	5 cut(s)	280, 292, 370, 394, 555
BssNI	GRCGYC	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	613
Bst2BI	CACGAG	1 cut(s)	613
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	1 cut(s)	450
BstACI	GRCGYC	1 cut(s)	78
BstC8I	GCNNGC	4 cut(s)	103, 478, 610, 643
BstDEI	CTNAG	3 cut(s)	510, 596, 622
BstDSI	CCRYGG	2 cut(s)	193, 252
BstF5I	GGATG	2 cut(s)	355, 558
BstFNI	CGCG	2 cut(s)	99, 378
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	2 cut(s)	80, 101
BstKTI	GATC	5 cut(s)	283, 295, 373, 397, 558
BstMAI	GTCTC	2 cut(s)	113, 281
BstMBI	GATC	5 cut(s)	280, 292, 370, 394, 555
BstMWI	GCNNNNNNNGC	2 cut(s)	325, 359
BstNI	CCWGG	1 cut(s)	505
BstSCI	CCNGG	1 cut(s)	503
BstSFI	CTRYAG	1 cut(s)	354
BstSLI	GKGCMC	1 cut(s)	585
BstUI	CGCG	2 cut(s)	99, 378
BstV1I	GCAGC	5 cut(s)	185, 315, 318, 340, 467
BstXI	CCANNNNNNTGG	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	161, 275
BtgI	CCRYGG	2 cut(s)	193, 252
BtgZI	GCGATG	1 cut(s)	441
BtsCI	GGATG	2 cut(s)	355, 558
BtsIMutI	CAGTG	1 cut(s)	283
Cac8I	GCNNGC	4 cut(s)	103, 478, 610, 643
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	2 cut(s)	80, 101
Cfr13I	GGNCC	1 cut(s)	142
CseI	GACGC	1 cut(s)	564
Csp6I	GTAC	3 cut(s)	220, 226, 492
CviAII	CATG	2 cut(s)	22, 590
CviQI	GTAC	3 cut(s)	220, 226, 492
DdeI	CTNAG	3 cut(s)	510, 596, 622
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	5 cut(s)	282, 294, 372, 396, 557
DpnII	GATC	5 cut(s)	280, 292, 370, 394, 555
DrdI	GACNNNNNNGTC	1 cut(s)	245
DriI	GACNNNNNGTC	1 cut(s)	154
DseDI	GACNNNNNNGTC	1 cut(s)	245
EaeI	YGGCCR	1 cut(s)	273
Eam1105I	GACNNNNNGTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	614
Eco47I	GGWCC	1 cut(s)	142
Eco88I	CYCGRG	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	503
EcoT38I	GRGCYC	1 cut(s)	614
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	2 cut(s)	25, 593
FaiI	YATR	4 cut(s)	23, 393, 546, 591
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	2 cut(s)	21, 589
FauI	CCCGC	3 cut(s)	110, 312, 601
FbaI	TGATCA	1 cut(s)	292
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	9 cut(s)	18, 188, 199, 301, 329, 332, 354, 461, 481
FokI	GGATG	2 cut(s)	362, 565
FriOI	GRGCYC	1 cut(s)	614
Fsp4HI	GCNGC	9 cut(s)	18, 188, 199, 301, 329, 332, 354, 461, 481
FspBI	CTAG	1 cut(s)	646
GlaI	GCGC	2 cut(s)	79, 100
GluI	GCNGC	9 cut(s)	18, 188, 199, 301, 329, 332, 354, 461, 481
GsuI	CTGGAG	2 cut(s)	167, 305
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	161, 275
HapII	CCGG	1 cut(s)	559
HgaI	GACGC	1 cut(s)	564
HhaI	GCGC	2 cut(s)	80, 101
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	25, 593
Hin6I	GCGC	2 cut(s)	78, 99
HinP1I	GCGC	2 cut(s)	78, 99
HinfI	GANTC	2 cut(s)	72, 620
HpaII	CCGG	1 cut(s)	559
Hpy166II	GTNNAC	2 cut(s)	94, 145
Hpy188I	TCNGA	5 cut(s)	71, 88, 233, 297, 597
Hpy188III	TCNNGA	3 cut(s)	284, 341, 405
Hpy8I	GTNNAC	2 cut(s)	94, 145
Hpy99I	CGWCG	4 cut(s)	131, 212, 215, 245
HpyAV	CCTTC	3 cut(s)	172, 305, 518
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4IV	ACGT	2 cut(s)	126, 207
HpyCH4V	TGCA	3 cut(s)	356, 401, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	325, 359
HpyF3I	CTNAG	3 cut(s)	510, 596, 622
HpySE526I	ACGT	2 cut(s)	126, 207
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	25, 593
HspAI	GCGC	2 cut(s)	78, 99
KasI	GGCGCC	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	5 cut(s)	280, 292, 370, 394, 555
LmnI	GCTCC	1 cut(s)	195
Lsp1109I	GCAGC	5 cut(s)	185, 315, 318, 340, 467
LweI	GCATC	4 cut(s)	340, 349, 410, 464
MaeI	CTAG	1 cut(s)	646
MaeII	ACGT	2 cut(s)	126, 207
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	5 cut(s)	282, 294, 372, 396, 557
MbiI	CCGCTC	2 cut(s)	190, 300
MboI	GATC	5 cut(s)	280, 292, 370, 394, 555
MboII	GAAGA	1 cut(s)	320
MhlI	GDGCHC	3 cut(s)	264, 585, 614
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	1 cut(s)	422
MluI	ACGCGT	1 cut(s)	376
MluNI	TGGCCA	1 cut(s)	275
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	614
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	9 cut(s)	68, 131, 133, 169, 238, 308, 329, 431, 505
Mox20I	TGGCCA	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	528
MscI	TGGCCA	1 cut(s)	275
MslI	CAYNNNNRTG	1 cut(s)	588
Msp20I	TGGCCA	1 cut(s)	275
MspI	CCGG	1 cut(s)	559
MspR9I	CCNGG	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	505
MvnI	CGCG	2 cut(s)	99, 378
MwoI	GCNNNNNNNGC	2 cut(s)	325, 359
NarI	GGCGCC	1 cut(s)	78
NdeII	GATC	5 cut(s)	280, 292, 370, 394, 555
NlaIII	CATG	2 cut(s)	25, 593
NlaIV	GGNNCC	2 cut(s)	42, 79
NmeAIII	GCCGAG	1 cut(s)	442
NmuCI	GTSAC	1 cut(s)	236
PaeR7I	CTCGAG	1 cut(s)	263
PasI	CCCWGGG	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	3 cut(s)	219, 249, 255
PdmI	GAANNNNTTC	1 cut(s)	528
PfeI	GAWTC	1 cut(s)	72
PflFI	GACNNNGTC	1 cut(s)	245
PkrI	GCNGC	9 cut(s)	19, 189, 200, 302, 330, 333, 355, 462, 482
PleI	GAGTC	1 cut(s)	614
PluTI	GGCGCC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	614
Psp6I	CCWGG	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	503
PspN4I	GGNNCC	2 cut(s)	42, 79
PspPI	GGNCC	1 cut(s)	142
PspXI	VCTCGAGB	1 cut(s)	263
PstI	CTGCAG	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	362
PsyI	GACNNNGTC	1 cut(s)	245
RsaI	GTAC	3 cut(s)	221, 227, 493
RsaNI	GTAC	3 cut(s)	220, 226, 492
RseI	CAYNNNNRTG	1 cut(s)	588
SatI	GCNGC	9 cut(s)	18, 188, 199, 301, 329, 332, 354, 461, 481
Sau3AI	GATC	5 cut(s)	280, 292, 370, 394, 555
Sau96I	GGNCC	1 cut(s)	142
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	1 cut(s)	614
ScrFI	CCNGG	1 cut(s)	505
SduI	GDGCHC	3 cut(s)	264, 585, 614
SfaNI	GCATC	4 cut(s)	340, 349, 410, 464
SfcI	CTRYAG	1 cut(s)	354
SfoI	GGCGCC	1 cut(s)	79
Sfr274I	CTCGAG	1 cut(s)	263
SinI	GGWCC	1 cut(s)	142
SlaI	CTCGAG	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	588
SmlI	CTYRAG	2 cut(s)	134, 263
SmoI	CTYRAG	2 cut(s)	134, 263
Sse9I	AATT	1 cut(s)	422
SsiI	CCGC	8 cut(s)	18, 97, 103, 188, 300, 319, 461, 608
SspDI	GGCGCC	1 cut(s)	77
SspMI	CTAG	1 cut(s)	646
StyD4I	CCNGG	1 cut(s)	503
TaaI	ACNGT	1 cut(s)	450
TaiI	ACGT	2 cut(s)	129, 210
TaqI	TCGA	3 cut(s)	174, 264, 571
TasI	AATT	1 cut(s)	422
TatI	WGTACW	1 cut(s)	225
TauI	GCSGC	4 cut(s)	20, 190, 303, 463
TfiI	GAWTC	1 cut(s)	72
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	5 cut(s)	198, 328, 331, 353, 480
Tsp45I	GTSAC	1 cut(s)	236
TspRI	CASTG	1 cut(s)	283
Tth111I	GACNNNGTC	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XhoI	CTCGAG	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	93
XmnI	GAANNNNTTC	1 cut(s)	528
XspI	CTAG	1 cut(s)	646
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.