Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006246

Physical Location & Seq

Genomic Coordinates Reverse (-)

1152193 .. 1153567

Gene Structure 1375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0013600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCGCTGGCTTTCGATGAGTTCGGCCGGCCATTCATAATCCTGAGGGAGCAGATGGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAACTGTCGCAGAGTCAAGACTATGAAACTGGAGTTGTTGGGTTGGCTGGTTCACTTGTAGAGCAGGCTGAGCGGCTGTTGGAGCGCGGTATTCATCCCATTAGGGTTGCAGAGGGATATGAGATGGCATCCAGGATTGCTGTTGATCATTTGCAGCATATATCAAAGAAATTTGAATTTGGACTGGAAAATATTGAGCCTTTGGTTCAGACTTGCATGACTACTTTGTCATCAAAGATTGTCAATCGGTGCAAGCGTCCCCTAGCTGAGATTGCTGTCAGAGAAGTTCTTGCTGTTGCTGATTTAGAGAGGAAGGATGTGAACCTAGATTTGATTAAAGTAGAGGGGAAAGTAGGGGGCAAATTAGAGGATACTGAGCTGGTTTATGGGGGAAGAATTGTGCCCAGGTTCCAAGAGTTGACACCAGATAAGTTGGGGAAGGCTGGCTTGGTTCGTGAAAAATCATTTGGTACTACAAAAGATCGAATGCTGTACATTGAACACTGTGCAAATTCAAGGGCTGTAACCATATTTATTCGCAGAGGTAACAAAATGATGATAGAGGAGACCAAGCGCAGTATCCACGATGCTCTGTGTGTAGCTAGGAATCTTATTCGCAACAATTCTATTGTCTACGGTGGTGGCTCGGCAGAGATATCTTGCTCGGTTGCTGTAGAGGCAGCTGCAGATAAACACCCAGGAGTTGAGCAATATGCTATCAGAGCATTTGCAGATGCTTTGGATGCTGTTCCTATGGCACTTGCAGAGAATAGTGGCCTTCAACCTATTGAAACACTAAATGCAGTGAAATCTCAGCAGATCAAGGAGAAAAATCCCCACTGTGGAATAGACTGCAACGATGTTGGCACAATTGATATGTGTGAGCAGAATGTCTTCGAGACTTTAATTGGAAAGCAGCAGCAAATCTTACTCGCCACACAAGTTGTCAAGATGATACTTAAAATAGATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008047 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009893 GO:0009987 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019827 GO:0019887 GO:0019912 GO:0022622 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033674 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0080090 GO:0097472 GO:0098727 GO:0098772 GO:0099402 GO:0140096 GO:1901564 GO:1904029 GO:1904031 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

354

Amino Acids

39.26

Weight (kDa)

5.78

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	17 - 160	2.5e-27	TCP-1/cpn60 chaperonin family
Cpn60_TCP1	PF00118	159 - 353	4.4e-58	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28980 AT4G28980 AT4G28980
fragaria_vesca	FvH4_1g05460
malus_domestica	MD02G1062700.v1.1 MD15G1190500.v1.1
prunus_persica	Prupe.7G226600_v2.0.a1
pyrus_communis	pycom02g04310 pycom02g04320 pycom15g17070
rosa_chinensis	RchiOBHm_Chr2g0091141
rosa_laevigata	RLG00000006226 RLG00000014960 RLG00000016185
rosa_multiflora	Rmu_co8390673.1_g000001 Rmu_sc0002343.1_g000049 Rmu_sc0004851.1_g000011
rosa_roxburghii	Rroxscaffold_2G00150500 Rroxscaffold_5G00373520 Rroxscaffold_6G00397830 Rroxscaffold_7G00210230
rosa_rugosa	Rorug02G0013600
rosa_samantha	Rh2AG059600 Rh2BG058300 Rh2CG060100 Rh2DG058900
rosa_wichuraiana	Rw2G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	316
AccBSI	CCGCTC	1 cut(s)	163
AccI	GTMKAC	1 cut(s)	723
AccII	CGCG	1 cut(s)	177
AciI	CCGC	2 cut(s)	163, 177
AcoI	YGGCCR	2 cut(s)	25, 29
AcsI	RAATTY	3 cut(s)	260, 266, 601
AfaI	GTAC	2 cut(s)	562, 584
AfiI	CCNNNNNNNGG	1 cut(s)	932
AgsI	TTSAA	6 cut(s)	92, 266, 590, 606, 872, 881
AjnI	CCWGG	3 cut(s)	221, 494, 787
AjuI	GAANNNNNNNTTGG	4 cut(s)	521, 540, 553, 572
AluBI	AGCT	5 cut(s)	82, 356, 469, 692, 773
AluI	AGCT	5 cut(s)	82, 356, 469, 692, 773
Alw26I	GTCTC	2 cut(s)	650, 983
AoxI	GGCC	3 cut(s)	25, 29, 865
ApeKI	GCWGC	5 cut(s)	244, 770, 773, 1006, 1009
ApoI	RAATTY	3 cut(s)	260, 266, 601
Asp700I	GAANNNNTTC	1 cut(s)	983
AspLEI	GCGC	3 cut(s)	7, 177, 666
AxyI	CCTNAGG	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	976
BbvI	GCAGC	5 cut(s)	256, 760, 782, 1018, 1021
BccI	CCATC	3 cut(s)	49, 79, 208
BciT130I	CCWGG	3 cut(s)	223, 496, 789
BciVI	GTATCC	2 cut(s)	454, 680
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	2 cut(s)	650, 983
BfaI	CTAG	3 cut(s)	353, 416, 693
BfmI	CTRYAG	2 cut(s)	762, 774
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	2 cut(s)	454, 680
BisI	GCNGC	6 cut(s)	164, 245, 771, 774, 1007, 1010
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	6 cut(s)	165, 246, 772, 775, 1008, 1011
Bme1390I	CCNGG	3 cut(s)	223, 496, 789
BmiI	GGNNCC	1 cut(s)	500
BmrFI	CCNGG	3 cut(s)	223, 496, 789
BmsI	GCATC	4 cut(s)	227, 667, 814, 823
BpiI	GAAGAC	1 cut(s)	976
BpmI	CTGGAG	1 cut(s)	141
Bpu1102I	GCTNAGC	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	650
BsaJI	CCNNGG	2 cut(s)	494, 787
Bsc4I	CCNNNNNNNGG	1 cut(s)	932
Bse118I	RCCGGY	1 cut(s)	27
Bse1I	ACTGG	2 cut(s)	124, 279
Bse21I	CCTNAGG	1 cut(s)	44
BseBI	CCWGG	3 cut(s)	223, 496, 789
BseDI	CCNNGG	2 cut(s)	494, 787
BseGI	GGATG	5 cut(s)	64, 184, 218, 412, 838
BseLI	CCNNNNNNNGG	1 cut(s)	932
BseMII	CTCAG	5 cut(s)	35, 150, 348, 456, 917
BseNI	ACTGG	2 cut(s)	124, 279
BseRI	GAGGAG	1 cut(s)	668
BseSI	GKGCMC	1 cut(s)	495
BseX3I	CGGCCG	1 cut(s)	25
BseXI	GCAGC	5 cut(s)	256, 760, 782, 1018, 1021
Bsh1236I	CGCG	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	3 cut(s)	27, 31, 867
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	932
BsmAI	GTCTC	2 cut(s)	650, 983
BsmFI	GGGAC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	582
BsnI	GGCC	3 cut(s)	27, 31, 867
Bso31I	GGTCTC	1 cut(s)	650
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	3 cut(s)	235, 571, 909
Bsp1720I	GCTNAGC	1 cut(s)	159
BspACI	CCGC	2 cut(s)	163, 177
BspANI	GGCC	3 cut(s)	27, 31, 867
BspCNI	CTCAG	5 cut(s)	36, 151, 349, 457, 916
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	500
BspMAI	CTGCAG	1 cut(s)	778
BspTNI	GGTCTC	1 cut(s)	650
BsrBI	CCGCTC	1 cut(s)	163
BsrFI	RCCGGY	1 cut(s)	27
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	2 cut(s)	124, 279
BssAI	RCCGGY	1 cut(s)	27
BssECI	CCNNGG	2 cut(s)	494, 787
BssMI	GATC	3 cut(s)	235, 571, 909
Bst2UI	CCWGG	3 cut(s)	223, 496, 789
Bst4CI	ACNGT	4 cut(s)	96, 596, 728, 932
BstAUI	TGTACA	1 cut(s)	582
BstC8I	GCNNGC	5 cut(s)	9, 29, 156, 344, 535
BstDEI	CTNAG	5 cut(s)	44, 159, 357, 465, 903
BstF5I	GGATG	5 cut(s)	64, 184, 218, 412, 838
BstFNI	CGCG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	3 cut(s)	7, 177, 666
BstKTI	GATC	3 cut(s)	238, 574, 912
BstMAI	GTCTC	2 cut(s)	650, 983
BstMBI	GATC	3 cut(s)	235, 571, 909
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	6 cut(s)	160, 172, 362, 767, 812, 833
BstNI	CCWGG	3 cut(s)	223, 496, 789
BstSCI	CCNGG	3 cut(s)	221, 494, 787
BstSFI	CTRYAG	2 cut(s)	762, 774
BstSLI	GKGCMC	1 cut(s)	495
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	5 cut(s)	256, 760, 782, 1018, 1021
BstV2I	GAAGAC	1 cut(s)	976
BstZI	CGGCCG	1 cut(s)	25
Bsu36I	CCTNAGG	1 cut(s)	44
BsuI	GTATCC	2 cut(s)	454, 680
BsuRI	GGCC	3 cut(s)	27, 31, 867
BtsCI	GGATG	5 cut(s)	64, 184, 218, 412, 838
BtsI	GCAGTG	1 cut(s)	900
BtsIMutI	CAGTG	3 cut(s)	592, 900, 928
Cac8I	GCNNGC	5 cut(s)	9, 29, 156, 344, 535
CfoI	GCGC	3 cut(s)	7, 177, 666
Cfr10I	RCCGGY	1 cut(s)	27
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	561, 583
CspCI	CAANNNNNGTGG	2 cut(s)	1015, 1050
CviAII	CATG	1 cut(s)	307
CviQI	GTAC	2 cut(s)	561, 583
DdeI	CTNAG	5 cut(s)	44, 159, 357, 465, 903
DpnI	GATC	3 cut(s)	237, 573, 911
DpnII	GATC	3 cut(s)	235, 571, 909
DrdI	GACNNNNNNGTC	1 cut(s)	316
DseDI	GACNNNNNNGTC	1 cut(s)	316
EaeI	YGGCCR	2 cut(s)	25, 29
EagI	CGGCCG	1 cut(s)	25
EclXI	CGGCCG	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	650
Eco32I	GATATC	1 cut(s)	747
Eco52I	CGGCCG	1 cut(s)	25
Eco81I	CCTNAGG	1 cut(s)	44
EcoRII	CCWGG	3 cut(s)	221, 494, 787
EcoRV	GATATC	1 cut(s)	747
FaeI	CATG	1 cut(s)	310
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	1 cut(s)	306
FbaI	TGATCA	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	6 cut(s)	164, 245, 771, 774, 1007, 1010
FokI	GGATG	5 cut(s)	71, 171, 205, 419, 845
FseI	GGCCGGCC	1 cut(s)	31
Fsp4HI	GCNGC	6 cut(s)	164, 245, 771, 774, 1007, 1010
FspBI	CTAG	3 cut(s)	353, 416, 693
GlaI	GCGC	3 cut(s)	6, 176, 665
GluI	GCNGC	6 cut(s)	164, 245, 771, 774, 1007, 1010
GsuI	CTGGAG	1 cut(s)	141
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	27, 31, 867
HapII	CCGG	1 cut(s)	28
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	3 cut(s)	7, 177, 666
Hin1II	CATG	1 cut(s)	310
Hin6I	GCGC	3 cut(s)	5, 175, 664
HinP1I	GCGC	3 cut(s)	5, 175, 664
HincII	GTYRAC	2 cut(s)	64, 510
HindII	GTYRAC	2 cut(s)	64, 510
HinfI	GANTC	2 cut(s)	103, 697
HpaII	CCGG	1 cut(s)	28
Hpy166II	GTNNAC	5 cut(s)	64, 143, 412, 510, 724
Hpy188I	TCNGA	3 cut(s)	300, 371, 812
Hpy188III	TCNNGA	5 cut(s)	43, 107, 545, 988, 1039
Hpy8I	GTNNAC	5 cut(s)	64, 143, 412, 510, 724
HpyAV	CCTTC	3 cut(s)	397, 523, 878
HpyCH4III	ACNGT	4 cut(s)	96, 596, 728, 932
HpyF10VI	GCNNNNNNNGC	6 cut(s)	160, 172, 362, 767, 812, 833
HpyF3I	CTNAG	5 cut(s)	44, 159, 357, 465, 903
Hsp92II	CATG	1 cut(s)	310
HspAI	GCGC	3 cut(s)	5, 175, 664
KroI	GCCGGC	1 cut(s)	27
KroNI	GCCGGC	1 cut(s)	29
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	235, 571, 909
LmnI	GCTCC	2 cut(s)	49, 172
Lsp1109I	GCAGC	5 cut(s)	256, 760, 782, 1018, 1021
LweI	GCATC	4 cut(s)	227, 667, 814, 823
MaeI	CTAG	3 cut(s)	353, 416, 693
MaeIII	GTNAC	2 cut(s)	613, 635
MalI	GATC	3 cut(s)	237, 573, 911
MbiI	CCGCTC	1 cut(s)	163
MboI	GATC	3 cut(s)	235, 571, 909
MboII	GAAGA	2 cut(s)	495, 976
MfeI	CAATTG	1 cut(s)	960
MhlI	GDGCHC	1 cut(s)	495
MluCI	AATT	9 cut(s)	72, 260, 266, 452, 486, 601, 712, 960, 996
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	8 cut(s)	39, 196, 393, 427, 451, 626, 646, 760
MroNI	GCCGGC	1 cut(s)	27
MroXI	GAANNNNTTC	1 cut(s)	983
MseI	TTAA	3 cut(s)	426, 995, 1050
MspA1I	CMGCKG	1 cut(s)	773
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	3 cut(s)	223, 496, 789
MunI	CAATTG	1 cut(s)	960
Mva1269I	GAATGC	1 cut(s)	582
MvaI	CCWGG	3 cut(s)	223, 496, 789
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	6 cut(s)	160, 172, 362, 767, 812, 833
NaeI	GCCGGC	1 cut(s)	29
NdeII	GATC	3 cut(s)	235, 571, 909
NgoMIV	GCCGGC	1 cut(s)	27
NlaIII	CATG	1 cut(s)	310
NlaIV	GGNNCC	1 cut(s)	500
NmeAIII	GCCGAG	1 cut(s)	716
PcsI	WCGNNNNNNNCGW	1 cut(s)	343
PctI	GAATGC	1 cut(s)	582
PdiI	GCCGGC	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	983
PfeI	GAWTC	1 cut(s)	697
PfoI	TCCNGGA	1 cut(s)	221
PkrI	GCNGC	6 cut(s)	165, 246, 772, 775, 1008, 1011
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
Psp6I	CCWGG	3 cut(s)	221, 494, 787
PspGI	CCWGG	3 cut(s)	221, 494, 787
PspN4I	GGNNCC	1 cut(s)	500
PstI	CTGCAG	1 cut(s)	778
PvuII	CAGCTG	1 cut(s)	773
RigI	GGCCGGCC	1 cut(s)	31
RsaI	GTAC	2 cut(s)	562, 584
RsaNI	GTAC	2 cut(s)	561, 583
SaqAI	TTAA	3 cut(s)	426, 995, 1050
SatI	GCNGC	6 cut(s)	164, 245, 771, 774, 1007, 1010
Sau3AI	GATC	3 cut(s)	235, 571, 909
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	3 cut(s)	223, 496, 789
SduI	GDGCHC	1 cut(s)	495
SetI	ASST	9 cut(s)	84, 358, 417, 471, 500, 637, 694, 775, 877
SfaNI	GCATC	4 cut(s)	227, 667, 814, 823
SfcI	CTRYAG	2 cut(s)	762, 774
Sse9I	AATT	9 cut(s)	72, 260, 266, 452, 486, 601, 712, 960, 996
SsiI	CCGC	2 cut(s)	163, 177
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	3 cut(s)	353, 416, 693
StyD4I	CCNGG	3 cut(s)	221, 494, 787
TaaI	ACNGT	4 cut(s)	96, 596, 728, 932
TaqI	TCGA	3 cut(s)	15, 574, 987
TasI	AATT	9 cut(s)	72, 260, 266, 452, 486, 601, 712, 960, 996
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	697
Tru1I	TTAA	3 cut(s)	426, 995, 1050
Tru9I	TTAA	3 cut(s)	426, 995, 1050
TscAI	CASTG	3 cut(s)	599, 900, 935
TseI	GCWGC	5 cut(s)	244, 770, 773, 1006, 1009
TspDTI	ATGAA	3 cut(s)	25, 129, 173
TspRI	CASTG	3 cut(s)	599, 900, 935
XapI	RAATTY	3 cut(s)	260, 266, 601
XmiI	GTMKAC	1 cut(s)	723
XmnI	GAANNNNTTC	1 cut(s)	983
XspI	CTAG	3 cut(s)	353, 416, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.