Rmu_sc0002343.1_g000049
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002343.1
Physical Location & Seq
Reverse (-)
239612 .. 242086
2475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002343.1_g000049.1.cds

Sequence Viewer

Length: 585 bp
atgtcgcgagctacgatcctcgggcgggtcgaatcaggcgcctactccgacgtctaccgcgcccgccgtctcgccgacaacctcagcgtcgctcttcaggaggtccacgactaccagtcgaccttccgtgaaatcgaggagctccagaagctccacggctgccccaaggtcgtcgttttgtacgagtacttctggcgtgaggacgaggacaccatgctcgtgctcgagtttctggccattgatcagagcggcgaagaaggagggcgggatgggctgcggcgaggtcaaaaggtggatgctgtctgggatcgacgcgtgtcattggaatatgatcttgagcaatttgttgatggggaggatggcgtgctcaagccagctgaagttatacagggggacaataaattcagacgctggaatccgatcactagtcctgtagccagattcgagattccggtgaacggtcgccagattccggtcataggtcgctggattccggtctccggtcgctggagttcgtcaccggagtcggcggccggctactggtcaccggagtccggcaaggtctccgatgacttctctctctaa

Protein Analysis

194

Amino Acids

22.11

Weight (kDa)

4.86

Isoelectric Point (pI)

68.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 54
AccB1I GGYRCC 1 cut(s) 38
AccBSI CCGCTC 1 cut(s) 249
AccI GTMKAC 2 cut(s) 54, 119
AccII CGCG 3 cut(s) 7, 60, 315
AciI CCGC 7 cut(s) 25, 58, 64, 249, 265, 277, 530
AclWI GGATC 2 cut(s) 10, 315
AcoI YGGCCR 2 cut(s) 234, 531
AcsI RAATTY 1 cut(s) 401
AcuI CTGAAG 2 cut(s) 80, 399
AcyI GRCGYC 2 cut(s) 39, 51
AfaI GTAC 2 cut(s) 182, 188
AfiI CCNNNNNNNGG 8 cut(s) 25, 458, 472, 479, 500, 507, 540, 554
AflIII ACRYGT 1 cut(s) 313
AhdI GACNNNNNGTC 1 cut(s) 115
AhlI ACTAGT 1 cut(s) 425
AluBI AGCT 4 cut(s) 11, 142, 151, 377
AluI AGCT 4 cut(s) 11, 142, 151, 377
Alw21I GWGCWC 3 cut(s) 144, 225, 369
Alw26I GTCTC 3 cut(s) 74, 502, 568
AlwI GGATC 2 cut(s) 10, 315
AlwNI CAGNNNCTG 1 cut(s) 411
Ama87I CYCGRG 2 cut(s) 20, 224
AoxI GGCC 2 cut(s) 234, 531
ApeKI GCWGC 2 cut(s) 159, 274
ApoI RAATTY 1 cut(s) 401
AspLEI GCGC 2 cut(s) 41, 62
AspS9I GGNCC 1 cut(s) 103
AsuHPI GGTGA 3 cut(s) 466, 510, 537
AvaI CYCGRG 2 cut(s) 20, 224
AvaII GGWCC 1 cut(s) 103
BalI TGGCCA 1 cut(s) 236
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 144
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BauI CACGAG 1 cut(s) 218
Bbv12I GWGCWC 3 cut(s) 144, 225, 369
BbvCI CCTCAGC 1 cut(s) 83
BbvI GCAGC 2 cut(s) 146, 261
BccI CCATC 3 cut(s) 263, 344, 353
BceAI ACGGC 2 cut(s) 51, 172
BclI TGATCA 1 cut(s) 241
BcoDI GTCTC 3 cut(s) 74, 502, 568
BcuI ACTAGT 1 cut(s) 425
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 432
BfoI RGCGCY 1 cut(s) 42
BisI GCNGC 5 cut(s) 160, 250, 275, 278, 531
BlsI GCNGC 5 cut(s) 161, 251, 276, 279, 532
BmcAI AGTACT 1 cut(s) 188
Bme18I GGWCC 1 cut(s) 103
BmeRI GACNNNNNGTC 1 cut(s) 115
BmeT110I CYCGRG 2 cut(s) 20, 224
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 40
BmsI GCATC 1 cut(s) 286
BoxI GACNNNNGTC 1 cut(s) 316
BpmI CTGGAG 2 cut(s) 128, 529
Bpu10I CCTNAGC 1 cut(s) 83
BpuEI CTTGAG 2 cut(s) 353, 356
BsaHI GRCGYC 2 cut(s) 39, 51
BsaI GGTCTC 2 cut(s) 502, 568
BsaJI CCNNGG 3 cut(s) 19, 154, 165
BsaWI WCCGGW 6 cut(s) 451, 472, 493, 500, 520, 547
Bsc4I CCNNNNNNNGG 8 cut(s) 25, 458, 472, 479, 500, 507, 540, 554
Bse118I RCCGGY 1 cut(s) 533
Bse1I ACTGG 2 cut(s) 115, 545
BseDI CCNNGG 3 cut(s) 19, 154, 165
BseGI GGATG 3 cut(s) 274, 301, 364
BseLI CCNNNNNNNGG 8 cut(s) 25, 458, 472, 479, 500, 507, 540, 554
BseMII CTCAG 1 cut(s) 97
BseNI ACTGG 2 cut(s) 115, 545
BseRI GAGGAG 1 cut(s) 152
BseX3I CGGCCG 1 cut(s) 531
BseXI GCAGC 2 cut(s) 146, 261
Bsh1236I CGCG 3 cut(s) 7, 60, 315
Bsh1285I CGRYCG 3 cut(s) 463, 505, 534
BshFI GGCC 2 cut(s) 236, 533
BshNI GGYRCC 1 cut(s) 38
BsiEI CGRYCG 3 cut(s) 463, 505, 534
BsiHKAI GWGCWC 3 cut(s) 144, 225, 369
BsiHKCI CYCGRG 2 cut(s) 20, 224
BsiSI CCGG 8 cut(s) 452, 473, 494, 501, 521, 534, 548, 555
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 8 cut(s) 25, 458, 472, 479, 500, 507, 540, 554
BsmAI GTCTC 3 cut(s) 74, 502, 568
BsmBI CGTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 407
BsnI GGCC 2 cut(s) 236, 533
Bso31I GGTCTC 2 cut(s) 502, 568
BsoBI CYCGRG 2 cut(s) 20, 224
Bsp1286I GDGCHC 3 cut(s) 144, 225, 369
Bsp143I GATC 5 cut(s) 15, 241, 307, 331, 420
Bsp68I TCGCGA 1 cut(s) 7
BspACI CCGC 7 cut(s) 25, 58, 64, 249, 265, 277, 530
BspANI GGCC 2 cut(s) 236, 533
BspCNI CTCAG 1 cut(s) 96
BspFNI CGCG 3 cut(s) 7, 60, 315
BspLI GGNNCC 1 cut(s) 40
BspPI GGATC 2 cut(s) 10, 315
BspQI GCTCTTC 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 38
BspTNI GGTCTC 2 cut(s) 502, 568
BsrBI CCGCTC 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 533
BsrI ACTGG 2 cut(s) 115, 545
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 3 cut(s) 19, 154, 165
BssMI GATC 5 cut(s) 15, 241, 307, 331, 420
BssNI GRCGYC 2 cut(s) 39, 51
BssSI CACGAG 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 461
Bst6I CTCTTC 1 cut(s) 99
BstACI GRCGYC 2 cut(s) 39, 51
BstC8I GCNNGC 5 cut(s) 9, 64, 365, 375, 535
BstDEI CTNAG 1 cut(s) 83
BstDSI CCRYGG 1 cut(s) 154
BstEII GGTNACC 1 cut(s) 543
BstF5I GGATG 3 cut(s) 274, 301, 364
BstFNI CGCG 3 cut(s) 7, 60, 315
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 2 cut(s) 41, 62
BstKTI GATC 5 cut(s) 18, 244, 310, 334, 423
BstMAI GTCTC 3 cut(s) 74, 502, 568
BstMBI GATC 5 cut(s) 15, 241, 307, 331, 420
BstMCI CGRYCG 3 cut(s) 463, 505, 534
BstMWI GCNNNNNNNGC 2 cut(s) 148, 271
BstPAI GACNNNNGTC 1 cut(s) 316
BstPI GGTNACC 1 cut(s) 543
BstSFI CTRYAG 1 cut(s) 432
BstUI CGCG 3 cut(s) 7, 60, 315
BstV1I GCAGC 2 cut(s) 146, 261
BstZI CGGCCG 1 cut(s) 531
BsuRI GGCC 2 cut(s) 236, 533
BtgI CCRYGG 1 cut(s) 154
BtsCI GGATG 3 cut(s) 274, 301, 364
BtuMI TCGCGA 1 cut(s) 7
Cac8I GCNNGC 5 cut(s) 9, 64, 365, 375, 535
CaiI CAGNNNCTG 1 cut(s) 411
CfoI GCGC 2 cut(s) 41, 62
Cfr10I RCCGGY 1 cut(s) 533
Cfr13I GGNCC 1 cut(s) 103
CseI GACGC 3 cut(s) 76, 321, 417
Csp6I GTAC 2 cut(s) 181, 187
CviAII CATG 1 cut(s) 214
CviQI GTAC 2 cut(s) 181, 187
DdeI CTNAG 1 cut(s) 83
DinI GGCGCC 1 cut(s) 40
DpnI GATC 5 cut(s) 17, 243, 309, 333, 422
DpnII GATC 5 cut(s) 15, 241, 307, 331, 420
DriI GACNNNNNGTC 1 cut(s) 115
EaeI YGGCCR 2 cut(s) 234, 531
EagI CGGCCG 1 cut(s) 531
Eam1104I CTCTTC 1 cut(s) 99
Eam1105I GACNNNNNGTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 99
Ecl136II GAGCTC 1 cut(s) 142
EclXI CGGCCG 1 cut(s) 531
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 144
Eco31I GGTCTC 2 cut(s) 502, 568
Eco47I GGWCC 1 cut(s) 103
Eco52I CGGCCG 1 cut(s) 531
Eco53kI GAGCTC 1 cut(s) 142
Eco57I CTGAAG 2 cut(s) 80, 399
Eco88I CYCGRG 2 cut(s) 20, 224
Eco91I GGTNACC 1 cut(s) 543
EcoICRI GAGCTC 1 cut(s) 142
EcoO65I GGTNACC 1 cut(s) 543
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 144
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 1 cut(s) 217
FaiI YATR 4 cut(s) 215, 330, 386, 479
FaqI GGGAC 1 cut(s) 407
FatI CATG 1 cut(s) 213
FauI CCCGC 3 cut(s) 18, 71, 258
FbaI TGATCA 1 cut(s) 241
FblI GTMKAC 2 cut(s) 54, 119
Fnu4HI GCNGC 5 cut(s) 160, 250, 275, 278, 531
FokI GGATG 3 cut(s) 281, 308, 371
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 5 cut(s) 160, 250, 275, 278, 531
FspBI CTAG 1 cut(s) 426
GlaI GCGC 2 cut(s) 40, 61
GluI GCNGC 5 cut(s) 160, 250, 275, 278, 531
GsuI CTGGAG 2 cut(s) 128, 529
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 2 cut(s) 236, 533
HapII CCGG 8 cut(s) 452, 473, 494, 501, 521, 534, 548, 555
HgaI GACGC 3 cut(s) 76, 321, 417
HhaI GCGC 2 cut(s) 41, 62
Hin1I GRCGYC 2 cut(s) 39, 51
Hin1II CATG 1 cut(s) 217
Hin6I GCGC 2 cut(s) 39, 60
HinP1I GCGC 2 cut(s) 39, 60
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HinfI GANTC 8 cut(s) 32, 415, 441, 448, 469, 490, 524, 551
HpaII CCGG 8 cut(s) 452, 473, 494, 501, 521, 534, 548, 555
HphI GGTGA 3 cut(s) 466, 510, 537
Hpy166II GTNNAC 4 cut(s) 55, 106, 120, 457
Hpy188I TCNGA 5 cut(s) 49, 246, 407, 420, 568
Hpy188III TCNNGA 5 cut(s) 6, 98, 145, 335, 445
Hpy8I GTNNAC 4 cut(s) 55, 106, 120, 457
Hpy99I CGWCG 4 cut(s) 53, 92, 176, 315
HpyAV CCTTC 2 cut(s) 133, 251
HpyCH4III ACNGT 1 cut(s) 461
HpyCH4IV ACGT 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 271
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 2 cut(s) 39, 51
Hsp92II CATG 1 cut(s) 217
HspAI GCGC 2 cut(s) 39, 60
KasI GGCGCC 1 cut(s) 38
KroI GCCGGC 1 cut(s) 533
KroNI GCCGGC 1 cut(s) 535
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 5 cut(s) 15, 241, 307, 331, 420
LguI GCTCTTC 1 cut(s) 99
LmnI GCTCC 3 cut(s) 139, 147, 156
Lsp1109I GCAGC 2 cut(s) 146, 261
LweI GCATC 1 cut(s) 286
MaeI CTAG 1 cut(s) 426
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 516, 543
MalI GATC 5 cut(s) 17, 243, 309, 333, 422
MbiI CCGCTC 1 cut(s) 249
MboI GATC 5 cut(s) 15, 241, 307, 331, 420
MboII GAAGA 2 cut(s) 86, 266
MhlI GDGCHC 3 cut(s) 144, 225, 369
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 2 cut(s) 341, 401
MluI ACGCGT 1 cut(s) 313
MluNI TGGCCA 1 cut(s) 236
Mly113I GGCGCC 1 cut(s) 39
MlyI GAGTC 2 cut(s) 533, 560
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 9 cut(s) 29, 92, 94, 130, 193, 199, 254, 275, 349
Mox20I TGGCCA 1 cut(s) 236
MroNI GCCGGC 1 cut(s) 533
MscI TGGCCA 1 cut(s) 236
MslI CAYNNNNRTG 1 cut(s) 218
Msp20I TGGCCA 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 8 cut(s) 452, 473, 494, 501, 521, 534, 548, 555
MvnI CGCG 3 cut(s) 7, 60, 315
MwoI GCNNNNNNNGC 2 cut(s) 148, 271
NaeI GCCGGC 1 cut(s) 535
NarI GGCGCC 1 cut(s) 39
NdeII GATC 5 cut(s) 15, 241, 307, 331, 420
NgoMIV GCCGGC 1 cut(s) 533
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 2 cut(s) 516, 543
NruI TCGCGA 1 cut(s) 7
PaeR7I CTCGAG 1 cut(s) 224
PciSI GCTCTTC 1 cut(s) 99
PcsI WCGNNNNNNNCGW 3 cut(s) 11, 27, 180
PdiI GCCGGC 1 cut(s) 535
PfeI GAWTC 6 cut(s) 32, 415, 441, 448, 469, 490
PkrI GCNGC 5 cut(s) 161, 251, 276, 279, 532
PleI GAGTC 2 cut(s) 532, 559
PluTI GGCGCC 1 cut(s) 42
PpsI GAGTC 2 cut(s) 532, 559
PshAI GACNNNNGTC 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 144
PspEI GGTNACC 1 cut(s) 543
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 1 cut(s) 103
PspXI VCTCGAGB 1 cut(s) 224
PstNI CAGNNNCTG 1 cut(s) 411
PvuII CAGCTG 1 cut(s) 377
RruI TCGCGA 1 cut(s) 7
RsaI GTAC 2 cut(s) 182, 188
RsaNI GTAC 2 cut(s) 181, 187
RseI CAYNNNNRTG 1 cut(s) 218
SacI GAGCTC 1 cut(s) 144
SalI GTCGAC 1 cut(s) 118
SapI GCTCTTC 1 cut(s) 99
SatI GCNGC 5 cut(s) 160, 250, 275, 278, 531
Sau3AI GATC 5 cut(s) 15, 241, 307, 331, 420
Sau96I GGNCC 1 cut(s) 103
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 2 cut(s) 533, 560
SduI GDGCHC 3 cut(s) 144, 225, 369
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 432
SfoI GGCGCC 1 cut(s) 40
Sfr274I CTCGAG 1 cut(s) 224
SinI GGWCC 1 cut(s) 103
SlaI CTCGAG 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 3 cut(s) 224, 335, 368
SmoI CTYRAG 3 cut(s) 224, 335, 368
SpeI ACTAGT 1 cut(s) 425
Sse9I AATT 2 cut(s) 341, 401
SsiI CCGC 7 cut(s) 25, 58, 64, 249, 265, 277, 530
SspDI GGCGCC 1 cut(s) 38
SspMI CTAG 1 cut(s) 426
SstI GAGCTC 1 cut(s) 144
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 461
TaiI ACGT 1 cut(s) 54
TaqI TCGA 6 cut(s) 30, 119, 135, 225, 310, 444
TasI AATT 2 cut(s) 341, 401
TatI WGTACW 1 cut(s) 186
TauI GCSGC 3 cut(s) 252, 280, 533
TfiI GAWTC 6 cut(s) 32, 415, 441, 448, 469, 490
TseFI GTSAC 2 cut(s) 516, 543
TseI GCWGC 2 cut(s) 159, 274
Tsp45I GTSAC 2 cut(s) 516, 543
TspGWI ACGGA 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 1 cut(s) 401
XhoI CTCGAG 1 cut(s) 224
XmiI GTMKAC 2 cut(s) 54, 119
XspI CTAG 1 cut(s) 426
ZraI GACGTC 1 cut(s) 52
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.