Rroxscaffold_6G00397830
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
19542354 .. 19552346
9993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00397830.1

Sequence Viewer

Length: 657 bp
ATGTCACTACTAGTTCTAGGATCCGGGCTATGGTTGGGTCTTCCATCTCATGGCGAGACCAAATCGAAGAGGGTCCGTCTCTTTTTGGGATCCGATCTCAAAGGTGGGCTAGGCTTTGGGGTGGCCGGCTTCGTGGTACGGGGATGTGACGACATAGGGATGCGTCGCTACGGCGAGCACTCGCAAGGTAGTTGTGTGGTGACGGCGTCGTACGTTGGCGCAAGCTTGGTGGCCATCTGCGCCGGTTCCTTGATTAGAGCATCCGATATGCATACTCAAATAATCGTAGCCCATCATCCGCCTAGGATTAGAGCATCCGATAAACATTCTCAACTTAGCCCGTCACCCGATAAGGGTCGTGGCATCTATTATACTCAACCAATCGTAGCTCATCATTCACCTAGGATTAGAGCATCCGATTCCTCATACCGCGAAGAGCTGGAGCATCCACACCTGACCCGAGATAATCACCAAGTACCGGATCCTCGAGCGGGTCCGATCCGGCGCCTACTCGACGTCTACCGCGCCCGCTGTCTCGCCAACAACCTCGCCGTCGCTCCTAAGGAGGTCCACGACTACCGGTCGGCCTTCGGCGAAATCGAGGCTCTCCGGACGCTCCACAGCTGCCCCAATGTAGTAATTCGGCGCGAGGACTAG

Protein Analysis

218

Amino Acids

23.94

Weight (kDa)

9.37

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 519
AccB1I GGYRCC 1 cut(s) 504
AccB7I CCANNNNNTGG 1 cut(s) 50
AccBSI CCGCTC 1 cut(s) 491
AccI GTMKAC 1 cut(s) 519
AccII CGCG 3 cut(s) 432, 525, 648
AccIII TCCGGA 1 cut(s) 609
AciI CCGC 5 cut(s) 299, 430, 491, 523, 529
AclWI GGATC 7 cut(s) 15, 28, 84, 97, 476, 489, 493
AcoI YGGCCR 2 cut(s) 123, 231
AcyI GRCGYC 3 cut(s) 206, 505, 516
AfaI GTAC 3 cut(s) 138, 212, 477
AfiI CCNNNNNNNGG 5 cut(s) 30, 50, 353, 478, 491
AgeI ACCGGT 1 cut(s) 579
AhdI GACNNNNNGTC 1 cut(s) 580
AhlI ACTAGT 1 cut(s) 10
AluBI AGCT 4 cut(s) 225, 389, 439, 624
AluI AGCT 4 cut(s) 225, 389, 439, 624
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 3 cut(s) 50, 83, 539
AlwI GGATC 7 cut(s) 15, 28, 84, 97, 476, 489, 493
Ama87I CYCGRG 2 cut(s) 459, 486
Aor13HI TCCGGA 1 cut(s) 609
AoxI GGCC 3 cut(s) 123, 231, 585
ApeKI GCWGC 1 cut(s) 624
AsiGI ACCGGT 1 cut(s) 579
AspA2I CCTAGG 2 cut(s) 302, 401
AspLEI GCGC 5 cut(s) 221, 242, 507, 527, 648
AspS9I GGNCC 3 cut(s) 73, 494, 568
AsuC2I CCSGG 1 cut(s) 25
AsuHPI GGTGA 4 cut(s) 211, 336, 390, 461
AvaI CYCGRG 2 cut(s) 459, 486
AvaII GGWCC 3 cut(s) 73, 494, 568
AvrII CCTAGG 2 cut(s) 302, 401
AxyI CCTNAGG 1 cut(s) 561
BalI TGGCCA 1 cut(s) 233
BamHI GGATCC 3 cut(s) 20, 89, 481
BanI GGYRCC 1 cut(s) 504
BbsI GAAGAC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 611
BccI CCATC 3 cut(s) 52, 242, 300
BceAI ACGGC 3 cut(s) 187, 219, 536
BcnI CCSGG 1 cut(s) 25
BcoDI GTCTC 3 cut(s) 50, 83, 539
BcuI ACTAGT 1 cut(s) 10
BfaI CTAG 6 cut(s) 11, 17, 110, 303, 402, 655
BfoI RGCGCY 1 cut(s) 508
BisI GCNGC 1 cut(s) 625
BlnI CCTAGG 2 cut(s) 302, 401
BlsI GCNGC 1 cut(s) 626
Bme1390I CCNGG 1 cut(s) 25
Bme18I GGWCC 3 cut(s) 73, 494, 568
BmeRI GACNNNNNGTC 1 cut(s) 580
BmeT110I CYCGRG 2 cut(s) 459, 486
BmgT120I GGNCC 3 cut(s) 73, 494, 568
BmiI GGNNCC 7 cut(s) 22, 74, 91, 247, 483, 495, 506
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 6 cut(s) 150, 269, 323, 372, 422, 454
BpiI GAAGAC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 25
BsaHI GRCGYC 3 cut(s) 206, 505, 516
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 302, 401
BsaWI WCCGGW 3 cut(s) 478, 579, 609
Bsc4I CCNNNNNNNGG 5 cut(s) 30, 50, 353, 478, 491
Bse118I RCCGGY 3 cut(s) 125, 242, 579
Bse21I CCTNAGG 1 cut(s) 561
BseAI TCCGGA 1 cut(s) 609
BseDI CCNNGG 2 cut(s) 302, 401
BseGI GGATG 7 cut(s) 149, 165, 260, 295, 314, 413, 445
BseLI CCNNNNNNNGG 5 cut(s) 30, 50, 353, 478, 491
BseXI GCAGC 1 cut(s) 611
Bsh1236I CGCG 3 cut(s) 432, 525, 648
Bsh1285I CGRYCG 1 cut(s) 584
BshFI GGCC 3 cut(s) 125, 233, 587
BshNI GGYRCC 1 cut(s) 504
BshTI ACCGGT 1 cut(s) 579
BsiEI CGRYCG 1 cut(s) 584
BsiHKAI GWGCWC 1 cut(s) 180
BsiHKCI CYCGRG 2 cut(s) 459, 486
BsiSI CCGG 7 cut(s) 24, 126, 243, 479, 502, 580, 610
BsiWI CGTACG 1 cut(s) 210
BslI CCNNNNNNNGG 5 cut(s) 30, 50, 353, 478, 491
BsmAI GTCTC 3 cut(s) 50, 83, 539
BsmBI CGTCTC 1 cut(s) 83
BsnI GGCC 3 cut(s) 125, 233, 587
Bso31I GGTCTC 1 cut(s) 50
BsoBI CYCGRG 2 cut(s) 459, 486
Bsp1286I GDGCHC 1 cut(s) 180
Bsp13I TCCGGA 1 cut(s) 609
Bsp143I GATC 5 cut(s) 20, 89, 94, 481, 498
BspACI CCGC 5 cut(s) 299, 430, 491, 523, 529
BspANI GGCC 3 cut(s) 125, 233, 587
BspEI TCCGGA 1 cut(s) 609
BspFNI CGCG 3 cut(s) 432, 525, 648
BspLI GGNNCC 7 cut(s) 22, 74, 91, 247, 483, 495, 506
BspPI GGATC 7 cut(s) 15, 28, 84, 97, 476, 489, 493
BspQI GCTCTTC 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 504
BspTNI GGTCTC 1 cut(s) 50
BsrBI CCGCTC 1 cut(s) 491
BsrFI RCCGGY 3 cut(s) 125, 242, 579
BssAI RCCGGY 3 cut(s) 125, 242, 579
BssECI CCNNGG 2 cut(s) 302, 401
BssMI GATC 5 cut(s) 20, 89, 94, 481, 498
BssNI GRCGYC 3 cut(s) 206, 505, 516
BssT1I CCWWGG 2 cut(s) 302, 401
Bst6I CTCTTC 2 cut(s) 62, 429
BstACI GRCGYC 3 cut(s) 206, 505, 516
BstC8I GCNNGC 4 cut(s) 127, 176, 223, 529
BstDEI CTNAG 2 cut(s) 335, 561
BstF5I GGATG 7 cut(s) 149, 165, 260, 295, 314, 413, 445
BstFNI CGCG 3 cut(s) 432, 525, 648
BstH2I RGCGCY 1 cut(s) 508
BstHHI GCGC 5 cut(s) 221, 242, 507, 527, 648
BstKTI GATC 5 cut(s) 23, 92, 97, 484, 501
BstMAI GTCTC 3 cut(s) 50, 83, 539
BstMBI GATC 5 cut(s) 20, 89, 94, 481, 498
BstMCI CGRYCG 1 cut(s) 584
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 23
BstUI CGCG 3 cut(s) 432, 525, 648
BstV1I GCAGC 1 cut(s) 611
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 3 cut(s) 20, 89, 481
BstYI RGATCY 3 cut(s) 20, 89, 481
Bsu36I CCTNAGG 1 cut(s) 561
BsuRI GGCC 3 cut(s) 125, 233, 587
BtsCI GGATG 7 cut(s) 149, 165, 260, 295, 314, 413, 445
Cac8I GCNNGC 4 cut(s) 127, 176, 223, 529
CfoI GCGC 5 cut(s) 221, 242, 507, 527, 648
Cfr10I RCCGGY 3 cut(s) 125, 242, 579
Cfr13I GGNCC 3 cut(s) 73, 494, 568
CseI GACGC 3 cut(s) 152, 195, 622
Csp6I GTAC 3 cut(s) 137, 211, 476
CspAI ACCGGT 1 cut(s) 579
CspCI CAANNNNNGTGG 2 cut(s) 210, 245
CviAII CATG 1 cut(s) 50
CviQI GTAC 3 cut(s) 137, 211, 476
DdeI CTNAG 2 cut(s) 335, 561
DinI GGCGCC 1 cut(s) 506
DpnI GATC 5 cut(s) 22, 91, 96, 483, 500
DpnII GATC 5 cut(s) 20, 89, 94, 481, 498
DriI GACNNNNNGTC 1 cut(s) 580
EaeI YGGCCR 2 cut(s) 123, 231
Eam1104I CTCTTC 2 cut(s) 62, 429
Eam1105I GACNNNNNGTC 1 cut(s) 580
EarI CTCTTC 2 cut(s) 62, 429
EciI GGCGGA 1 cut(s) 288
Eco130I CCWWGG 2 cut(s) 302, 401
Eco31I GGTCTC 1 cut(s) 50
Eco47I GGWCC 3 cut(s) 73, 494, 568
Eco81I CCTNAGG 1 cut(s) 561
Eco88I CYCGRG 2 cut(s) 459, 486
EcoT14I CCWWGG 2 cut(s) 302, 401
EcoT22I ATGCAT 1 cut(s) 273
EgeI GGCGCC 1 cut(s) 506
EheI GGCGCC 1 cut(s) 506
ErhI CCWWGG 2 cut(s) 302, 401
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 1 cut(s) 53
FaiI YATR 7 cut(s) 31, 51, 155, 269, 273, 372, 427
FatI CATG 1 cut(s) 49
FauI CCCGC 2 cut(s) 484, 536
FblI GTMKAC 1 cut(s) 519
Fnu4HI GCNGC 1 cut(s) 625
FokI GGATG 7 cut(s) 156, 172, 247, 282, 301, 400, 432
Fsp4HI GCNGC 1 cut(s) 625
FspBI CTAG 6 cut(s) 11, 17, 110, 303, 402, 655
GlaI GCGC 5 cut(s) 220, 241, 506, 526, 647
GluI GCNGC 1 cut(s) 625
GsuI CTGGAG 1 cut(s) 461
HaeII RGCGCY 1 cut(s) 508
HaeIII GGCC 3 cut(s) 125, 233, 587
HapII CCGG 7 cut(s) 24, 126, 243, 479, 502, 580, 610
HgaI GACGC 3 cut(s) 152, 195, 622
HhaI GCGC 5 cut(s) 221, 242, 507, 527, 648
Hin1I GRCGYC 3 cut(s) 206, 505, 516
Hin1II CATG 1 cut(s) 53
Hin6I GCGC 5 cut(s) 219, 240, 505, 525, 646
HinP1I GCGC 5 cut(s) 219, 240, 505, 525, 646
HindIII AAGCTT 1 cut(s) 223
HinfI GANTC 1 cut(s) 419
HpaII CCGG 7 cut(s) 24, 126, 243, 479, 502, 580, 610
HphI GGTGA 4 cut(s) 211, 336, 390, 461
Hpy166II GTNNAC 2 cut(s) 520, 571
Hpy188I TCNGA 5 cut(s) 94, 265, 319, 418, 498
Hpy188III TCNNGA 1 cut(s) 610
Hpy8I GTNNAC 2 cut(s) 520, 571
Hpy99I CGWCG 4 cut(s) 168, 211, 518, 557
HpyAV CCTTC 1 cut(s) 598
HpyCH4IV ACGT 2 cut(s) 213, 516
HpyCH4V TGCA 1 cut(s) 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 2 cut(s) 335, 561
HpySE526I ACGT 2 cut(s) 213, 516
Hsp92I GRCGYC 3 cut(s) 206, 505, 516
Hsp92II CATG 1 cut(s) 53
HspAI GCGC 5 cut(s) 219, 240, 505, 525, 646
KasI GGCGCC 1 cut(s) 504
Kpn2I TCCGGA 1 cut(s) 609
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Kzo9I GATC 5 cut(s) 20, 89, 94, 481, 498
LguI GCTCTTC 1 cut(s) 429
LmnI GCTCC 3 cut(s) 442, 562, 621
LpnPI CCDG 9 cut(s) 37, 139, 256, 425, 467, 492, 515, 593, 623
Lsp1109I GCAGC 1 cut(s) 611
LweI GCATC 6 cut(s) 150, 269, 323, 372, 422, 454
MaeI CTAG 6 cut(s) 11, 17, 110, 303, 402, 655
MaeII ACGT 2 cut(s) 213, 516
MaeIII GTNAC 4 cut(s) 3, 146, 199, 342
MalI GATC 5 cut(s) 22, 91, 96, 483, 500
MbiI CCGCTC 1 cut(s) 491
MboI GATC 5 cut(s) 20, 89, 94, 481, 498
MboII GAAGA 3 cut(s) 32, 79, 446
MflI RGATCY 3 cut(s) 20, 89, 481
MhlI GDGCHC 1 cut(s) 180
MlsI TGGCCA 1 cut(s) 233
MluCI AATT 1 cut(s) 639
MluNI TGGCCA 1 cut(s) 233
Mly113I GGCGCC 1 cut(s) 505
MnlI CCTC 7 cut(s) 63, 433, 495, 557, 559, 595, 643
Mox20I TGGCCA 1 cut(s) 233
Mph1103I ATGCAT 1 cut(s) 273
MroI TCCGGA 1 cut(s) 609
MroNI GCCGGC 1 cut(s) 125
MscI TGGCCA 1 cut(s) 233
MslI CAYNNNNRTG 1 cut(s) 158
Msp20I TGGCCA 1 cut(s) 233
MspA1I CMGCKG 2 cut(s) 531, 624
MspI CCGG 7 cut(s) 24, 126, 243, 479, 502, 580, 610
MspR9I CCNGG 1 cut(s) 25
MvnI CGCG 3 cut(s) 432, 525, 648
MwoI GCNNNNNNNGC 1 cut(s) 239
NaeI GCCGGC 1 cut(s) 127
NarI GGCGCC 1 cut(s) 505
NciI CCSGG 1 cut(s) 25
NdeII GATC 5 cut(s) 20, 89, 94, 481, 498
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 1 cut(s) 53
NlaIV GGNNCC 7 cut(s) 22, 74, 91, 247, 483, 495, 506
NmuCI GTSAC 4 cut(s) 3, 146, 199, 342
NsiI ATGCAT 1 cut(s) 273
PaeR7I CTCGAG 1 cut(s) 486
PciSI GCTCTTC 1 cut(s) 429
PcsI WCGNNNNNNNCGW 1 cut(s) 597
PdiI GCCGGC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 419
Pfl23II CGTACG 1 cut(s) 210
PflFI GACNNNGTC 1 cut(s) 205
PflMI CCANNNNNTGG 1 cut(s) 50
PinAI ACCGGT 1 cut(s) 579
PkrI GCNGC 1 cut(s) 626
PluTI GGCGCC 1 cut(s) 508
PspLI CGTACG 1 cut(s) 210
PspN4I GGNNCC 7 cut(s) 22, 74, 91, 247, 483, 495, 506
PspPI GGNCC 3 cut(s) 73, 494, 568
PspXI VCTCGAGB 1 cut(s) 486
PsuI RGATCY 3 cut(s) 20, 89, 481
PsyI GACNNNGTC 1 cut(s) 205
PvuII CAGCTG 1 cut(s) 624
RsaI GTAC 3 cut(s) 138, 212, 477
RsaNI GTAC 3 cut(s) 137, 211, 476
RseI CAYNNNNRTG 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 429
SatI GCNGC 1 cut(s) 625
Sau3AI GATC 5 cut(s) 20, 89, 94, 481, 498
Sau96I GGNCC 3 cut(s) 73, 494, 568
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 1 cut(s) 180
SfaNI GCATC 6 cut(s) 150, 269, 323, 372, 422, 454
SfoI GGCGCC 1 cut(s) 506
Sfr274I CTCGAG 1 cut(s) 486
SinI GGWCC 3 cut(s) 73, 494, 568
SlaI CTCGAG 1 cut(s) 486
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 486
SmoI CTYRAG 1 cut(s) 486
SpeI ACTAGT 1 cut(s) 10
Sse9I AATT 1 cut(s) 639
SsiI CCGC 5 cut(s) 299, 430, 491, 523, 529
SspDI GGCGCC 1 cut(s) 504
SspMI CTAG 6 cut(s) 11, 17, 110, 303, 402, 655
StyD4I CCNGG 1 cut(s) 23
StyI CCWWGG 2 cut(s) 302, 401
TaiI ACGT 2 cut(s) 216, 519
TaqI TCGA 4 cut(s) 65, 487, 513, 600
TasI AATT 1 cut(s) 639
TfiI GAWTC 1 cut(s) 419
TseFI GTSAC 4 cut(s) 3, 146, 199, 342
TseI GCWGC 1 cut(s) 624
Tsp45I GTSAC 4 cut(s) 3, 146, 199, 342
TspGWI ACGGA 1 cut(s) 65
Tth111I GACNNNGTC 1 cut(s) 205
Van91I CCANNNNNTGG 1 cut(s) 50
VpaK11BI GGWCC 3 cut(s) 73, 494, 568
XhoI CTCGAG 1 cut(s) 486
XmaJI CCTAGG 2 cut(s) 302, 401
XmiI GTMKAC 1 cut(s) 519
XspI CTAG 6 cut(s) 11, 17, 110, 303, 402, 655
ZraI GACGTC 1 cut(s) 517
Zsp2I ATGCAT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.