AT4G29860

Guanine nucleotide-binding protein subunit beta-like protein 1 homolog

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
14601698 .. 14605810
4113 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29860.1

Sequence Viewer

Length: 1161 bp
ATGAGTAAGAGACCTCCGCCTGATCCAGTGGCTGTGCTTAGAGGGCACCGTCACTCTGTTATGGATGTTTCCTTCCATCCATCAAAATCTCTGCTTTTCACTGGTTCAGCTGATGGAGAGTTGAGGATTTGGGATACTATTCAGCACCGTGCAGTTTCTTCTGCTTGGGCTCATAGTAGAGCAAATGGGGTTTTAGCTGTAGCAGCTAGTCCCTGGTTAGGAGAGGACAAGATTATCAGCCAGGGAAGAGATGGAACTGTTAAGTGTTGGGATATTGAAGATGGTGGTCTATCAAGAGACCCATTACTAATACTTGAGACATGCGCCTATCATTTTTGCAAGTTCTCTCTTGTTAAGAAGCCTAAGAATTCTCTGCAAGAAGCTGAAAGTCACTCACGGGGTTGTGATGAGCAGGATGGTGGAGACACATGTAATGTTCAAATTGCTGATGATAGTGAACGATCTGAGGAGGATTCTGGTTTGCTTCAGGATAAAGATCATGCTGAAGGTACCACTTTTGTAGCAGTAGTAGGGGAGCAACCTACTGAGGTAGAGATATGGGATCTCAATACCGGAGACAAGATAATACAGCTTCCTCAAAGTAGCCCTGACGAATCCCCCAATGCTTCTACCAAAGGAAGAGGAATGTGTATGGCTGTTCAATTGTTTTGCCCTCCTGAATCACAGGGTTTCTTACATGTCTTAGCTGGTTATGAGGATGGTTCAATACTTCTTTGGGATATACGCAATGCTAAGATTCCTCTAACAAGTGTGAAGTTTCATTCAGAGCCAGTTTTAAGTCTTAGTGTTGCATCATCATGTGATGGAGGAATCTCAGGAGGGGCAGATGACAAAATTGTGATGTATAATCTCAACCATTCAACTGGTTCTTGTACAATAAGGAAAGAGATTACTTTGGAAAGGCCCGGTGTATCGGGCACCTCAATTCGAGTCGATGGGAAAATTGCAGCCACGGCTGGTTGGGACCACAGAATACGAGTCTATAATTACCGCAAAGGAAATGCTCTAGCAATACTAAAGTACCACCGAGCAACGTGCAACGCTGTGTCCTACTCTCCAGACTGTGAGCTAATGGCGTCTGCGTCTGAAGATGCAACTGTTGCTCTCTGGAAACTATATCCTCCCCATAAATCTCTCTGA

Protein Analysis

386

Amino Acids

41.99

Weight (kDa)

5.61

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40 PF00400 9 - 45 8e-10 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 10 - 99 1.5e-12 WDR5 beta-propeller domain
WD40_Prp19 PF24814 10 - 95 2.8e-09 Prp19 WD40 domain
Beta-prop_TEP1_2nd PF25047 10 - 94 1.7e-07 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 10 - 96 2.3e-06 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 10 - 56 4.4e-06 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 11 - 94 6.2e-12 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 13 - 91 6.8e-07 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 16 - 95 6.2e-09 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 183 - 379 5.4e-17 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 232 - 378 1.6e-10 WDR3 second beta-propeller domain
WD40_CDC20-Fz PF24807 233 - 379 8.3e-13 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 234 - 379 3.1e-16 Prp19 WD40 domain
Beta-prop_TEP1_2nd PF25047 234 - 379 1.4e-06 TEP-1 second beta-propeller
WDR55 PF24796 234 - 378 9.5e-09 WDR55
Beta-prop_WDR36-Utp21_1st PF25171 234 - 377 1.6e-08 WDR36/Utp21 first beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 234 - 379 1.3e-07 WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3 PF25174 235 - 379 1.4e-15 THOC3 beta-propeller domain
WD40_Gbeta PF25391 237 - 378 1.2e-07 G protein beta WD-40 repeat protein
WD40_MABP1-WDR62_2nd PF24782 268 - 379 1e-06 MABP1/WDR62 second WD40 domain
Beta-prop_EML_2 PF23414 277 - 378 9.2e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 309 - 379 3.4e-12 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 315 - 379 1.8e-07 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 509
AccB1I GGYRCC 3 cut(s) 45, 509, 938
AciI CCGC 2 cut(s) 17, 1012
AclWI GGATC 2 cut(s) 17, 570
AcsI RAATTY 1 cut(s) 367
AcuI CTGAAG 3 cut(s) 470, 525, 1128
AcyI GRCGYC 1 cut(s) 1097
AfaI GTAC 3 cut(s) 511, 895, 1043
AfiI CCNNNNNNNGG 1 cut(s) 218
AflIII ACRYGT 2 cut(s) 428, 697
AgsI TTSAA 5 cut(s) 278, 440, 662, 726, 882
AjnI CCWGG 2 cut(s) 212, 240
AluBI AGCT 7 cut(s) 110, 197, 206, 383, 592, 707, 1090
AluI AGCT 7 cut(s) 110, 197, 206, 383, 592, 707, 1090
Alw26I GTCTC 5 cut(s) 4, 291, 311, 417, 570
AlwI GGATC 2 cut(s) 17, 570
AlwNI CAGNNNCTG 1 cut(s) 32
AoxI GGCC 1 cut(s) 923
ApeKI GCWGC 2 cut(s) 203, 968
ApoI RAATTY 1 cut(s) 367
Asp718I GGTACC 1 cut(s) 509
AspLEI GCGC 1 cut(s) 326
AspS9I GGNCC 2 cut(s) 924, 985
AsuC2I CCSGG 1 cut(s) 927
AvaII GGWCC 1 cut(s) 985
BaeGI GKGCMC 2 cut(s) 48, 941
BaeI ACNNNNGTAYC 2 cut(s) 1025, 1058
BanI GGYRCC 3 cut(s) 45, 509, 938
BanII GRGCYC 1 cut(s) 172
BbvI GCAGC 2 cut(s) 215, 980
BccI CCATC 9 cut(s) 84, 88, 107, 245, 275, 410, 713, 818, 950
BceAI ACGGC 1 cut(s) 990
BcgI CGANNNNNNTGC 2 cut(s) 1038, 1072
BciT130I CCWGG 2 cut(s) 214, 242
BciVI GTATCC 1 cut(s) 127
BcnI CCSGG 1 cut(s) 927
BcoDI GTCTC 5 cut(s) 4, 291, 311, 417, 570
BfaI CTAG 2 cut(s) 207, 1028
BfmI CTRYAG 1 cut(s) 198
BfuI GTATCC 1 cut(s) 127
BisI GCNGC 2 cut(s) 204, 969
BlsI GCNGC 2 cut(s) 205, 970
Bme1390I CCNGG 3 cut(s) 214, 242, 927
Bme18I GGWCC 1 cut(s) 985
BmgT120I GGNCC 2 cut(s) 924, 985
BmiI GGNNCC 4 cut(s) 47, 511, 940, 986
BmrFI CCNGG 3 cut(s) 214, 242, 927
BmsI GCATC 2 cut(s) 821, 1102
BpmI CTGGAG 1 cut(s) 1062
BpuEI CTTGAG 1 cut(s) 335
BpuMI CCSGG 1 cut(s) 927
BsaBI GATNNNNATC 1 cut(s) 495
BsaHI GRCGYC 1 cut(s) 1097
BsaI GGTCTC 2 cut(s) 4, 291
BsaJI CCNNGG 3 cut(s) 212, 241, 972
BsaWI WCCGGW 1 cut(s) 572
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 4 cut(s) 26, 106, 791, 889
Bse3DI GCAATG 1 cut(s) 754
Bse8I GATNNNNATC 1 cut(s) 495
BseBI CCWGG 2 cut(s) 214, 242
BseDI CCNNGG 3 cut(s) 212, 241, 972
BseGI GGATG 4 cut(s) 70, 76, 421, 724
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMI GCAATG 1 cut(s) 754
BseMII CTCAG 3 cut(s) 456, 537, 849
BseNI ACTGG 4 cut(s) 26, 106, 791, 889
BseRI GAGGAG 1 cut(s) 482
BseSI GKGCMC 2 cut(s) 48, 941
BseXI GCAGC 2 cut(s) 215, 980
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 1 cut(s) 925
BshNI GGYRCC 3 cut(s) 45, 509, 938
BsiSI CCGG 2 cut(s) 573, 927
BslFI GGGAC 2 cut(s) 195, 998
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 5 cut(s) 4, 291, 311, 417, 570
BsmFI GGGAC 2 cut(s) 195, 998
BsnI GGCC 1 cut(s) 925
Bso31I GGTCTC 2 cut(s) 4, 291
Bsp1286I GDGCHC 3 cut(s) 48, 172, 941
Bsp1407I TGTACA 1 cut(s) 893
Bsp143I GATC 4 cut(s) 22, 461, 496, 562
BspACI CCGC 2 cut(s) 17, 1012
BspANI GGCC 1 cut(s) 925
BspCNI CTCAG 3 cut(s) 457, 538, 848
BspLI GGNNCC 4 cut(s) 47, 511, 940, 986
BspPI GGATC 2 cut(s) 17, 570
BspT107I GGYRCC 3 cut(s) 45, 509, 938
BspTNI GGTCTC 2 cut(s) 4, 291
BsrDI GCAATG 1 cut(s) 754
BsrGI TGTACA 1 cut(s) 893
BsrI ACTGG 4 cut(s) 26, 106, 791, 889
BssECI CCNNGG 3 cut(s) 212, 241, 972
BssMI GATC 4 cut(s) 22, 461, 496, 562
BssNI GRCGYC 1 cut(s) 1097
Bst2UI CCWGG 2 cut(s) 214, 242
Bst4CI ACNGT 5 cut(s) 50, 149, 259, 1085, 1120
Bst6I CTCTTC 2 cut(s) 241, 634
BstACI GRCGYC 1 cut(s) 1097
BstAPI GCANNNNNTGC 1 cut(s) 1121
BstAUI TGTACA 1 cut(s) 893
BstDEI CTNAG 8 cut(s) 38, 363, 465, 546, 703, 753, 803, 835
BstDSI CCRYGG 1 cut(s) 972
BstF5I GGATG 4 cut(s) 70, 76, 421, 724
BstHHI GCGC 1 cut(s) 326
BstKTI GATC 4 cut(s) 25, 464, 499, 565
BstMAI GTCTC 5 cut(s) 4, 291, 311, 417, 570
BstMBI GATC 4 cut(s) 22, 461, 496, 562
BstMWI GCNNNNNNNGC 4 cut(s) 43, 203, 974, 1121
BstNI CCWGG 2 cut(s) 214, 242
BstNSI RCATGY 3 cut(s) 324, 432, 701
BstSCI CCNGG 3 cut(s) 212, 240, 925
BstSFI CTRYAG 1 cut(s) 198
BstSLI GKGCMC 2 cut(s) 48, 941
BstV1I GCAGC 2 cut(s) 215, 980
BstX2I RGATCY 1 cut(s) 562
BstXI CCANNNNNNTGG 1 cut(s) 884
BstYI RGATCY 1 cut(s) 562
BsuI GTATCC 1 cut(s) 127
BsuRI GGCC 1 cut(s) 925
BtgI CCRYGG 1 cut(s) 972
BtsCI GGATG 4 cut(s) 70, 76, 421, 724
BtsIMutI CAGTG 2 cut(s) 33, 99
CaiI CAGNNNCTG 1 cut(s) 32
CfoI GCGC 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 924, 985
CseI GACGC 2 cut(s) 1086, 1092
Csp6I GTAC 3 cut(s) 510, 894, 1042
CviAII CATG 5 cut(s) 321, 429, 500, 698, 819
CviQI GTAC 3 cut(s) 510, 894, 1042
DdeI CTNAG 8 cut(s) 38, 363, 465, 546, 703, 753, 803, 835
DpnI GATC 4 cut(s) 24, 463, 498, 564
DpnII GATC 4 cut(s) 22, 461, 496, 562
Eam1104I CTCTTC 2 cut(s) 241, 634
EarI CTCTTC 2 cut(s) 241, 634
EciI GGCGGA 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 172
Eco31I GGTCTC 2 cut(s) 4, 291
Eco47I GGWCC 1 cut(s) 985
Eco57I CTGAAG 3 cut(s) 470, 525, 1128
EcoRI GAATTC 1 cut(s) 367
EcoRII CCWGG 2 cut(s) 212, 240
EcoT38I GRGCYC 1 cut(s) 172
FaeI CATG 5 cut(s) 324, 432, 503, 701, 822
FaqI GGGAC 2 cut(s) 195, 998
FatI CATG 5 cut(s) 320, 428, 499, 697, 818
Fnu4HI GCNGC 2 cut(s) 204, 969
FokI GGATG 4 cut(s) 63, 77, 428, 731
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 2 cut(s) 204, 969
FspBI CTAG 2 cut(s) 207, 1028
GlaI GCGC 1 cut(s) 325
GluI GCNGC 2 cut(s) 204, 969
GsuI CTGGAG 1 cut(s) 1062
HaeIII GGCC 1 cut(s) 925
HapII CCGG 2 cut(s) 573, 927
HgaI GACGC 2 cut(s) 1086, 1092
HhaI GCGC 1 cut(s) 326
Hin1I GRCGYC 1 cut(s) 1097
Hin1II CATG 5 cut(s) 324, 432, 503, 701, 822
Hin6I GCGC 1 cut(s) 324
HinP1I GCGC 1 cut(s) 324
HinfI GANTC 7 cut(s) 473, 614, 680, 757, 831, 951, 999
HpaII CCGG 2 cut(s) 573, 927
Hpy166II GTNNAC 1 cut(s) 458
Hpy188I TCNGA 4 cut(s) 466, 787, 1108, 1160
Hpy188III TCNNGA 6 cut(s) 294, 488, 677, 837, 1079, 1129
Hpy8I GTNNAC 1 cut(s) 458
HpyAV CCTTC 2 cut(s) 82, 500
HpyCH4III ACNGT 5 cut(s) 50, 149, 259, 1085, 1120
HpyCH4IV ACGT 1 cut(s) 1055
HpyCH4V TGCA 7 cut(s) 152, 339, 376, 812, 968, 1059, 1115
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 203, 974, 1121
HpyF3I CTNAG 8 cut(s) 38, 363, 465, 546, 703, 753, 803, 835
HpySE526I ACGT 1 cut(s) 1055
Hsp92I GRCGYC 1 cut(s) 1097
Hsp92II CATG 5 cut(s) 324, 432, 503, 701, 822
HspAI GCGC 1 cut(s) 324
KpnI GGTACC 1 cut(s) 513
Kzo9I GATC 4 cut(s) 22, 461, 496, 562
LmnI GCTCC 1 cut(s) 535
Lsp1109I GCAGC 2 cut(s) 215, 980
LweI GCATC 2 cut(s) 821, 1102
MaeI CTAG 2 cut(s) 207, 1028
MaeII ACGT 1 cut(s) 1055
MaeIII GTNAC 2 cut(s) 50, 389
MalI GATC 4 cut(s) 24, 463, 498, 564
MboI GATC 4 cut(s) 22, 461, 496, 562
MboII GAAGA 5 cut(s) 150, 258, 290, 651, 1121
MfeI CAATTG 1 cut(s) 662
MflI RGATCY 1 cut(s) 562
MhlI GDGCHC 3 cut(s) 48, 172, 941
MluCI AATT 7 cut(s) 367, 441, 662, 855, 945, 963, 1006
MlyI GAGTC 2 cut(s) 960, 1008
MseI TTAA 3 cut(s) 261, 354, 797
MslI CAYNNNNRTG 1 cut(s) 817
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 2 cut(s) 573, 927
MspR9I CCNGG 3 cut(s) 214, 242, 927
MunI CAATTG 1 cut(s) 662
MvaI CCWGG 2 cut(s) 214, 242
MwoI GCNNNNNNNGC 4 cut(s) 43, 203, 974, 1121
NciI CCSGG 1 cut(s) 927
NdeII GATC 4 cut(s) 22, 461, 496, 562
NlaIII CATG 5 cut(s) 324, 432, 503, 701, 822
NlaIV GGNNCC 4 cut(s) 47, 511, 940, 986
NmuCI GTSAC 2 cut(s) 50, 389
NspI RCATGY 3 cut(s) 324, 432, 701
PciI ACATGT 2 cut(s) 428, 697
PfeI GAWTC 5 cut(s) 473, 614, 680, 757, 831
PkrI GCNGC 2 cut(s) 205, 970
PleI GAGTC 2 cut(s) 959, 1007
PpsI GAGTC 2 cut(s) 959, 1007
PscI ACATGT 2 cut(s) 428, 697
Psp6I CCWGG 2 cut(s) 212, 240
PspGI CCWGG 2 cut(s) 212, 240
PspN4I GGNNCC 4 cut(s) 47, 511, 940, 986
PspPI GGNCC 2 cut(s) 924, 985
PstNI CAGNNNCTG 1 cut(s) 32
PsuI RGATCY 1 cut(s) 562
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 3 cut(s) 511, 895, 1043
RsaNI GTAC 3 cut(s) 510, 894, 1042
RseI CAYNNNNRTG 1 cut(s) 817
SaqAI TTAA 3 cut(s) 261, 354, 797
SatI GCNGC 2 cut(s) 204, 969
Sau3AI GATC 4 cut(s) 22, 461, 496, 562
Sau96I GGNCC 2 cut(s) 924, 985
SchI GAGTC 2 cut(s) 960, 1008
ScrFI CCNGG 3 cut(s) 214, 242, 927
SduI GDGCHC 3 cut(s) 48, 172, 941
SfaNI GCATC 2 cut(s) 821, 1102
SfcI CTRYAG 1 cut(s) 198
SinI GGWCC 1 cut(s) 985
SmiMI CAYNNNNRTG 1 cut(s) 817
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 7 cut(s) 367, 441, 662, 855, 945, 963, 1006
SsiI CCGC 2 cut(s) 17, 1012
SspMI CTAG 2 cut(s) 207, 1028
StyD4I CCNGG 3 cut(s) 212, 240, 925
TaaI ACNGT 5 cut(s) 50, 149, 259, 1085, 1120
TaiI ACGT 1 cut(s) 1058
TaqI TCGA 2 cut(s) 949, 954
TasI AATT 7 cut(s) 367, 441, 662, 855, 945, 963, 1006
TatI WGTACW 1 cut(s) 893
TfiI GAWTC 5 cut(s) 473, 614, 680, 757, 831
Tru1I TTAA 3 cut(s) 261, 354, 797
Tru9I TTAA 3 cut(s) 261, 354, 797
TscAI CASTG 2 cut(s) 33, 106
TseFI GTSAC 2 cut(s) 50, 389
TseI GCWGC 2 cut(s) 203, 968
Tsp45I GTSAC 2 cut(s) 50, 389
TspDTI ATGAA 1 cut(s) 770
TspRI CASTG 2 cut(s) 33, 106
VpaK11BI GGWCC 1 cut(s) 985
XapI RAATTY 1 cut(s) 367
XceI RCATGY 3 cut(s) 324, 432, 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XspI CTAG 2 cut(s) 207, 1028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.