Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000943

Physical Location & Seq

Genomic Coordinates Reverse (-)

1031443 .. 1032888

Gene Structure 1446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1018000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGCAGCAAGCAGAGACGGCCGCCGGACCCAGTGGCGGTTCCGAGGTGCCACCGCGGCTCCGTCATGGACCTCTCTTTTCATCCTTCCCAACCACTCCTGTTCACCGGTTCATCAGATGGCGAGCTGAGGATCTGGGATACTTACCAGCATCGGACTGTATCATCAGCTGGGGTGCATAATGCAGCACATGGTATTGCTTCTGTTGCTTGTACTGCCAACAGAGTTATCAGGGCAGGGATGGGACGGTTAAATGTTGGGGATATTGAAGGTGGAGGGGAGCAGACTTCTGAGGTTGAGATTTGGGATCTTAATACTGCAGAAAGGTTTGCACGGCTTCCTCAAAGCTGCTTTGGTGGTTCCCCGGGTATTTCTTCCAAGGAGAGAGGTCCCATTCTAATTCATTCAACATTTTGCTTACTAGTTTCCGGGTTTGATTGTGTTTCAGTTTATACCAGATCGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006282 GO:0006810 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0009555 GO:0009636 GO:0009663 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010162 GO:0010431 GO:0010496 GO:0010497 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031461 GO:0031570 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034330 GO:0035670 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045216 GO:0045786 GO:0045787 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048609 GO:0048700 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0071156 GO:0071158 GO:0071695 GO:0071840 GO:0072718 GO:0080008 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090567 GO:0097327 GO:0097439 GO:0099402 GO:1902494 GO:1990234 GO:2000026 GO:2000280 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

156

Amino Acids

16.74

Weight (kDa)

8.37

Isoelectric Point (pI)

58.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40	PF00400	11 - 47	9.6e-09	WD domain, G-beta repeat
WD40_Prp19	PF24814	13 - 114	6.4e-08	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	13 - 91	4.9e-06	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	16 - 63	3.8e-06	THOC3 beta-propeller domain
Beta-prop_EML_2	PF23414	25 - 69	4.4e-06	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29860
fragaria_vesca	FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120
malus_domestica	MD08G1017100.v1.1 MD15G1016100.v1.1 MD15G1017900.v1.1 MD15G1018000.v1.1
prunus_persica	Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1
pyrus_communis	pycom08g01490 pycom15g01390
rosa_chinensis	RchiOBHm_Chr6g0272131 RchiOBHm_Chr6g0302231
rosa_laevigata	RLG00000011183 RLG00000013699
rosa_multiflora	Rmu_sc0013301.1_g000007 Rmu_sc0027601.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165940 Rroxscaffold_7G00196580
rosa_rugosa	Rorug06G0065900 Rorug06G0313400.1
rosa_samantha	Rh6AG183100 Rh6BG184000 Rh6BG476300 Rh6CG184400 Rh6DG176100 Rh6DG425800
rosa_wichuraiana	Rw4G012510 Rw6G015760 Rw6G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	48
AccII	CGCG	1 cut(s)	57
AciI	CCGC	4 cut(s)	23, 38, 55, 57
AclWI	GGATC	2 cut(s)	140, 315
AcoI	YGGCCR	1 cut(s)	20
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgeI	ACCGGT	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	269, 408
AhlI	ACTAGT	1 cut(s)	421
AluBI	AGCT	3 cut(s)	127, 170, 348
AluI	AGCT	3 cut(s)	127, 170, 348
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	2 cut(s)	140, 315
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	3 cut(s)	6, 185, 348
AsiGI	ACCGGT	1 cut(s)	107
AspS9I	GGNCC	3 cut(s)	28, 70, 389
AsuC2I	CCSGG	3 cut(s)	365, 366, 430
AsuHPI	GGTGA	1 cut(s)	97
AvaI	CYCGRG	1 cut(s)	364
AvaII	GGWCC	3 cut(s)	28, 70, 389
BanI	GGYRCC	1 cut(s)	48
BbvCI	CCTCAGC	1 cut(s)	128
BbvI	GCAGC	3 cut(s)	18, 197, 335
BccI	CCATC	2 cut(s)	113, 235
BceAI	ACGGC	2 cut(s)	35, 350
BciVI	GTATCC	1 cut(s)	133
BcnI	CCSGG	3 cut(s)	365, 366, 430
BcoDI	GTCTC	1 cut(s)	10
BcuI	ACTAGT	1 cut(s)	421
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	318
BfuI	GTATCC	1 cut(s)	133
BglI	GCCNNNNNGGC	1 cut(s)	57
BisI	GCNGC	5 cut(s)	7, 23, 58, 186, 349
BlsI	GCNGC	5 cut(s)	8, 24, 59, 187, 350
Bme1390I	CCNGG	3 cut(s)	365, 366, 430
Bme18I	GGWCC	3 cut(s)	28, 70, 389
BmeT110I	CYCGRG	1 cut(s)	364
BmgT120I	GGNCC	3 cut(s)	28, 70, 389
BmiI	GGNNCC	6 cut(s)	30, 42, 50, 61, 361, 391
BmrFI	CCNGG	3 cut(s)	365, 366, 430
BmrI	ACTGGG	1 cut(s)	26
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	26
Bpu10I	CCTNAGC	1 cut(s)	128
BpuMI	CCSGG	3 cut(s)	365, 366, 430
BsaJI	CCNNGG	5 cut(s)	44, 55, 363, 364, 378
BsaWI	WCCGGW	1 cut(s)	107
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	32
BseDI	CCNNGG	5 cut(s)	44, 55, 363, 364, 378
BseGI	GGATG	2 cut(s)	82, 246
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	2 cut(s)	119, 282
BseNI	ACTGG	1 cut(s)	32
BseX3I	CGGCCG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	18, 197, 335
BseYI	CCCAGC	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	22
BshNI	GGYRCC	1 cut(s)	48
BshTI	ACCGGT	1 cut(s)	107
BsiEI	CGRYCG	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	4 cut(s)	26, 108, 365, 429
BslFI	GGGAC	2 cut(s)	258, 375
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	10
BsmBI	CGTCTC	1 cut(s)	10
BsmFI	GGGAC	2 cut(s)	258, 375
BsnI	GGCC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	364
Bsp143I	GATC	3 cut(s)	132, 307, 458
BspACI	CCGC	4 cut(s)	23, 38, 55, 57
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	2 cut(s)	120, 283
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	6 cut(s)	30, 42, 50, 61, 361, 391
BspMAI	CTGCAG	1 cut(s)	322
BspPI	GGATC	2 cut(s)	140, 315
BspT107I	GGYRCC	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	5 cut(s)	44, 55, 363, 364, 378
BssMI	GATC	3 cut(s)	132, 307, 458
BssT1I	CCWWGG	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	160, 249
BstC8I	GCNNGC	2 cut(s)	11, 125
BstDEI	CTNAG	2 cut(s)	128, 291
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	82, 246
BstFNI	CGCG	1 cut(s)	57
BstKTI	GATC	3 cut(s)	135, 310, 461
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	3 cut(s)	132, 307, 458
BstMCI	CGRYCG	1 cut(s)	23
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 57, 206, 215
BstSCI	CCNGG	3 cut(s)	363, 364, 428
BstSFI	CTRYAG	1 cut(s)	318
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	3 cut(s)	18, 197, 335
BstX2I	RGATCY	2 cut(s)	132, 307
BstYI	RGATCY	2 cut(s)	132, 307
BstZI	CGGCCG	1 cut(s)	20
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	22
BtgI	CCRYGG	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	82, 246
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	11, 125
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	3 cut(s)	28, 70, 389
Cfr42I	CCGCGG	1 cut(s)	58
Cfr9I	CCCGGG	1 cut(s)	364
Csp6I	GTAC	1 cut(s)	213
CspAI	ACCGGT	1 cut(s)	107
CviAII	CATG	2 cut(s)	67, 191
CviJI	RGCY	6 cut(s)	22, 60, 127, 170, 337, 348
CviKI_1	RGCY	6 cut(s)	22, 60, 127, 170, 337, 348
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	2 cut(s)	128, 291
DpnI	GATC	3 cut(s)	134, 309, 460
DpnII	GATC	3 cut(s)	132, 307, 458
EaeI	YGGCCR	1 cut(s)	20
EagI	CGGCCG	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	378
Eco47I	GGWCC	3 cut(s)	28, 70, 389
Eco52I	CGGCCG	1 cut(s)	20
Eco88I	CYCGRG	1 cut(s)	364
EcoO109I	RGGNCCY	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	10
FaeI	CATG	2 cut(s)	70, 194
FaiI	YATR	4 cut(s)	68, 180, 192, 453
FaqI	GGGAC	2 cut(s)	258, 375
FatI	CATG	2 cut(s)	66, 190
Fnu4HI	GCNGC	5 cut(s)	7, 23, 58, 186, 349
FokI	GGATG	2 cut(s)	69, 253
Fsp4HI	GCNGC	5 cut(s)	7, 23, 58, 186, 349
FspBI	CTAG	1 cut(s)	422
GluI	GCNGC	5 cut(s)	7, 23, 58, 186, 349
GsaI	CCCAGC	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	4 cut(s)	26, 108, 365, 429
Hin1II	CATG	2 cut(s)	70, 194
HpaII	CCGG	4 cut(s)	26, 108, 365, 429
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	4 cut(s)	45, 118, 156, 292
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	2 cut(s)	96, 263
HpyCH4III	ACNGT	2 cut(s)	160, 249
HpyCH4V	TGCA	4 cut(s)	178, 185, 320, 332
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 57, 206, 215
HpyF3I	CTNAG	2 cut(s)	128, 291
Hsp92II	CATG	2 cut(s)	70, 194
KspI	CCGCGG	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	132, 307, 458
LmnI	GCTCC	2 cut(s)	65, 280
Lsp1109I	GCAGC	3 cut(s)	18, 197, 335
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	422
MalI	GATC	3 cut(s)	134, 309, 460
MboI	GATC	3 cut(s)	132, 307, 458
MboII	GAAGA	1 cut(s)	366
MflI	RGATCY	2 cut(s)	132, 307
MluCI	AATT	1 cut(s)	399
MnlI	CCTC	7 cut(s)	39, 83, 123, 269, 286, 351, 380
MseI	TTAA	2 cut(s)	251, 312
MspA1I	CMGCKG	2 cut(s)	57, 170
MspI	CCGG	4 cut(s)	26, 108, 365, 429
MspR9I	CCNGG	3 cut(s)	365, 366, 430
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	4 cut(s)	19, 57, 206, 215
NciI	CCSGG	3 cut(s)	365, 366, 430
NdeII	GATC	3 cut(s)	132, 307, 458
NlaIII	CATG	2 cut(s)	70, 194
NlaIV	GGNNCC	6 cut(s)	30, 42, 50, 61, 361, 391
PinAI	ACCGGT	1 cut(s)	107
PkrI	GCNGC	5 cut(s)	8, 24, 59, 187, 350
PpuMI	RGGWCCY	1 cut(s)	389
Psp5II	RGGWCCY	1 cut(s)	389
PspFI	CCCAGC	1 cut(s)	170
PspN4I	GGNNCC	6 cut(s)	30, 42, 50, 61, 361, 391
PspPI	GGNCC	3 cut(s)	28, 70, 389
PspPPI	RGGWCCY	1 cut(s)	389
PstI	CTGCAG	1 cut(s)	322
PsuI	RGATCY	2 cut(s)	132, 307
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
SacII	CCGCGG	1 cut(s)	58
SaqAI	TTAA	2 cut(s)	251, 312
SatI	GCNGC	5 cut(s)	7, 23, 58, 186, 349
Sau3AI	GATC	3 cut(s)	132, 307, 458
Sau96I	GGNCC	3 cut(s)	28, 70, 389
ScrFI	CCNGG	3 cut(s)	365, 366, 430
SetI	ASST	9 cut(s)	50, 75, 129, 172, 274, 297, 329, 350, 391
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	318
Sfr303I	CCGCGG	1 cut(s)	58
SgrBI	CCGCGG	1 cut(s)	58
SinI	GGWCC	3 cut(s)	28, 70, 389
SmaI	CCCGGG	1 cut(s)	366
SpeI	ACTAGT	1 cut(s)	421
Sse9I	AATT	1 cut(s)	399
SsiI	CCGC	4 cut(s)	23, 38, 55, 57
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	3 cut(s)	363, 364, 428
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	160, 249
TaqI	TCGA	1 cut(s)	461
TasI	AATT	1 cut(s)	399
TatI	WGTACW	1 cut(s)	212
TauI	GCSGC	2 cut(s)	25, 60
Tru1I	TTAA	2 cut(s)	251, 312
Tru9I	TTAA	2 cut(s)	251, 312
TscAI	CASTG	1 cut(s)	39
TseI	GCWGC	3 cut(s)	6, 185, 348
TspDTI	ATGAA	3 cut(s)	71, 102, 392
TspGWI	ACGGA	1 cut(s)	52
TspMI	CCCGGG	1 cut(s)	364
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	3 cut(s)	28, 70, 389
XmaI	CCCGGG	1 cut(s)	364
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.