Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000943

Physical Location & Seq

Genomic Coordinates Forward (+)

62358200 .. 62360592

Gene Structure 2393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27149

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTGCTTAGAGGTCACCGTGCCTCTTTCCGCAGACGGTGGGTTGCAGATTTGGGACACTCTGCAGAATCGGACGATAGTATCAGCAGGGGTGCATGGGGTTGCTTCTGTTGCTTGTAGCTCGTCGATTGGAGCTGACAAAGTTATCAACCAGGGTAGGGATGGAACTGTTAAGTGCTGGGATATTAGAGATGGAGGTCTATCCAGGACTCCCTCTGTGACGATCCCGACGAATGCTTACCACTTCTGTAAGCTTTCGTTGGTGAAGAGACCTCATTATTGTTCTACAAAAGTTGACGGGCCAAAGCATCATGACGGAGGTGAGCGGGAGACTACTGGTGCAGATACTCTGGATGATAATGAAGAAAATGTTGAGATTTGGGATCTTAATACTGCAGAAAGGTGTATGCGACTACCTCAAAGCTGTTCTGCTGGCTCATTAGCTATTTCTACCAAGGAAAGAGTTCAAGTATTTTTACTATTGGAATCACAGGGATTCCTAAATGTCATGGCTAGTTATAAGGATGGCTCCATGCTTTGGTGGGATATTAGAAATCCAGGTGTTCCAGTTACATCAATCGAGTTTCATTCAGAGCCAGTTTTAAGCCTTTGCATTGATGGTTCATGCAATGGTGGTATCTCAGGAGCTGCAGATGAAAAAAATTGTGCTCTACAGTTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006282 GO:0006810 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0009555 GO:0009636 GO:0009663 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010162 GO:0010431 GO:0010496 GO:0010497 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031461 GO:0031570 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034330 GO:0035670 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045216 GO:0045786 GO:0045787 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048609 GO:0048700 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0071156 GO:0071158 GO:0071695 GO:0071840 GO:0072718 GO:0080008 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090567 GO:0097327 GO:0097439 GO:0099402 GO:1902494 GO:1990234 GO:2000026 GO:2000280 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

227

Amino Acids

24.45

Weight (kDa)

5.08

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29860
fragaria_vesca	FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120
malus_domestica	MD08G1017100.v1.1 MD15G1016100.v1.1 MD15G1017900.v1.1 MD15G1018000.v1.1
prunus_persica	Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1
pyrus_communis	pycom08g01490 pycom15g01390
rosa_chinensis	RchiOBHm_Chr6g0272131 RchiOBHm_Chr6g0302231
rosa_laevigata	RLG00000011183 RLG00000013699
rosa_multiflora	Rmu_sc0013301.1_g000007 Rmu_sc0027601.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165940 Rroxscaffold_7G00196580
rosa_rugosa	Rorug06G0065900 Rorug06G0313400.1
rosa_samantha	Rh6AG183100 Rh6BG184000 Rh6BG476300 Rh6CG184400 Rh6DG176100 Rh6DG425800
rosa_wichuraiana	Rw4G012510 Rw6G015760 Rw6G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	519
AccB7I	CCANNNNNTGG	1 cut(s)	537
AccBSI	CCGCTC	1 cut(s)	325
AciI	CCGC	2 cut(s)	30, 325
AclWI	GGATC	2 cut(s)	217, 390
AfiI	CCNNNNNNNGG	2 cut(s)	157, 537
AgsI	TTSAA	1 cut(s)	467
AjnI	CCWGG	3 cut(s)	150, 203, 556
AluBI	AGCT	6 cut(s)	120, 134, 253, 423, 443, 647
AluI	AGCT	6 cut(s)	120, 134, 253, 423, 443, 647
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	2 cut(s)	262, 323
AlwI	GGATC	2 cut(s)	217, 390
AlwNI	CAGNNNCTG	1 cut(s)	647
AoxI	GGCC	1 cut(s)	299
ApeKI	GCWGC	1 cut(s)	647
Asp700I	GAANNNNTTC	1 cut(s)	462
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	3 cut(s)	7, 274, 332
BaeI	ACNNNNGTAYC	2 cut(s)	63, 96
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	1 cut(s)	634
BccI	CCATC	4 cut(s)	155, 185, 518, 611
BciT130I	CCWGG	3 cut(s)	152, 205, 558
BcoDI	GTCTC	2 cut(s)	262, 323
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	4 cut(s)	62, 393, 648, 671
BisI	GCNGC	1 cut(s)	648
BlsI	GCNGC	1 cut(s)	649
Bme1390I	CCNGG	3 cut(s)	152, 205, 558
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	529
BmrFI	CCNGG	3 cut(s)	152, 205, 558
BmsI	GCATC	1 cut(s)	316
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	2 cut(s)	151, 453
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 537
Bse1I	ACTGG	3 cut(s)	340, 566, 596
Bse3DI	GCAATG	1 cut(s)	634
BseBI	CCWGG	3 cut(s)	152, 205, 558
BseDI	CCNNGG	2 cut(s)	151, 453
BseGI	GGATG	3 cut(s)	166, 358, 529
BseLI	CCNNNNNNNGG	2 cut(s)	157, 537
BseMI	GCAATG	1 cut(s)	634
BseMII	CTCAG	1 cut(s)	654
BseNI	ACTGG	3 cut(s)	340, 566, 596
BseXI	GCAGC	1 cut(s)	634
BseYI	CCCAGC	1 cut(s)	177
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	670
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	157, 537
BsmAI	GTCTC	2 cut(s)	262, 323
BsmFI	GGGAC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	301
Bso31I	GGTCTC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp143I	GATC	2 cut(s)	222, 382
BspACI	CCGC	2 cut(s)	30, 325
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	1 cut(s)	653
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	529
BspMAI	CTGCAG	3 cut(s)	66, 397, 652
BspPI	GGATC	2 cut(s)	217, 390
BspTNI	GGTCTC	1 cut(s)	262
BsrBI	CCGCTC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	634
BsrI	ACTGG	3 cut(s)	340, 566, 596
BssECI	CCNNGG	2 cut(s)	151, 453
BssMI	GATC	2 cut(s)	222, 382
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	3 cut(s)	152, 205, 558
Bst4CI	ACNGT	4 cut(s)	19, 38, 169, 675
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	2 cut(s)	7, 640
BstEII	GGTNACC	1 cut(s)	13
BstF5I	GGATG	3 cut(s)	166, 358, 529
BstKTI	GATC	2 cut(s)	225, 385
BstMAI	GTCTC	2 cut(s)	262, 323
BstMBI	GATC	2 cut(s)	222, 382
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	3 cut(s)	152, 205, 558
BstPI	GGTNACC	1 cut(s)	13
BstSCI	CCNGG	3 cut(s)	150, 203, 556
BstSFI	CTRYAG	4 cut(s)	62, 393, 648, 671
BstV1I	GCAGC	1 cut(s)	634
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	301
BtsCI	GGATG	3 cut(s)	166, 358, 529
Cac8I	GCNNGC	1 cut(s)	433
CaiI	CAGNNNCTG	1 cut(s)	647
CciI	TCATGA	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	299
CviAII	CATG	5 cut(s)	95, 311, 508, 532, 624
DdeI	CTNAG	2 cut(s)	7, 640
DpnI	GATC	2 cut(s)	224, 384
DpnII	GATC	2 cut(s)	222, 382
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	262
Eco91I	GGTNACC	1 cut(s)	13
EcoO65I	GGTNACC	1 cut(s)	13
EcoRII	CCWGG	3 cut(s)	150, 203, 556
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	5 cut(s)	98, 314, 511, 535, 627
FaiI	YATR	7 cut(s)	96, 312, 407, 509, 519, 533, 625
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	5 cut(s)	94, 310, 507, 531, 623
FauI	CCCGC	1 cut(s)	318
Fnu4HI	GCNGC	1 cut(s)	648
FokI	GGATG	3 cut(s)	173, 365, 536
Fsp4HI	GCNGC	1 cut(s)	648
FspBI	CTAG	1 cut(s)	513
GluI	GCNGC	1 cut(s)	648
GsaI	CCCAGC	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	301
Hin1II	CATG	5 cut(s)	98, 314, 511, 535, 627
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	4 cut(s)	67, 208, 485, 495
HphI	GGTGA	3 cut(s)	7, 274, 332
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	72, 592
Hpy188III	TCNNGA	4 cut(s)	226, 311, 350, 642
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	2 cut(s)	127, 232
HpyCH4III	ACNGT	4 cut(s)	19, 38, 169, 675
HpyCH4V	TGCA	8 cut(s)	46, 64, 94, 341, 395, 612, 627, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	2 cut(s)	7, 640
Hsp92II	CATG	5 cut(s)	98, 314, 511, 535, 627
Kzo9I	GATC	2 cut(s)	222, 382
LmnI	GCTCC	3 cut(s)	131, 533, 644
Lsp1109I	GCAGC	1 cut(s)	634
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	513
MaeIII	GTNAC	3 cut(s)	13, 217, 568
MalI	GATC	2 cut(s)	224, 384
MbiI	CCGCTC	1 cut(s)	325
MboI	GATC	2 cut(s)	222, 382
MboII	GAAGA	2 cut(s)	277, 374
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	1 cut(s)	661
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	7 cut(s)	4, 33, 188, 223, 282, 311, 426
MroXI	GAANNNNTTC	1 cut(s)	462
MseI	TTAA	3 cut(s)	171, 387, 602
MspR9I	CCNGG	3 cut(s)	152, 205, 558
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	3 cut(s)	152, 205, 558
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	2 cut(s)	222, 382
NlaIII	CATG	5 cut(s)	98, 314, 511, 535, 627
NlaIV	GGNNCC	1 cut(s)	529
NmuCI	GTSAC	2 cut(s)	13, 217
PagI	TCATGA	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PctI	GAATGC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	3 cut(s)	67, 485, 495
PflMI	CCANNNNNTGG	1 cut(s)	537
PfoI	TCCNGGA	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	649
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PsiI	TTATAA	1 cut(s)	519
Psp6I	CCWGG	3 cut(s)	150, 203, 556
PspEI	GGTNACC	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	177
PspGI	CCWGG	3 cut(s)	150, 203, 556
PspN4I	GGNNCC	1 cut(s)	529
PspPI	GGNCC	1 cut(s)	299
PstI	CTGCAG	3 cut(s)	66, 397, 652
PstNI	CAGNNNCTG	1 cut(s)	647
PsuI	RGATCY	1 cut(s)	382
SaqAI	TTAA	3 cut(s)	171, 387, 602
SatI	GCNGC	1 cut(s)	648
Sau3AI	GATC	2 cut(s)	222, 382
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	3 cut(s)	152, 205, 558
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	1 cut(s)	316
SfcI	CTRYAG	4 cut(s)	62, 393, 648, 671
Sse9I	AATT	1 cut(s)	661
SsiI	CCGC	2 cut(s)	30, 325
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	3 cut(s)	150, 203, 556
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	4 cut(s)	19, 38, 169, 675
TaqI	TCGA	2 cut(s)	125, 579
TasI	AATT	1 cut(s)	661
TfiI	GAWTC	3 cut(s)	67, 485, 495
Tru1I	TTAA	3 cut(s)	171, 387, 602
Tru9I	TTAA	3 cut(s)	171, 387, 602
TseFI	GTSAC	2 cut(s)	13, 217
TseI	GCWGC	1 cut(s)	647
Tsp45I	GTSAC	2 cut(s)	13, 217
TspDTI	ATGAA	4 cut(s)	375, 575, 612, 669
TspGWI	ACGGA	1 cut(s)	330
Van91I	CCANNNNNTGG	1 cut(s)	537
XcmI	CCANNNNNNNNNTGG	1 cut(s)	158
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.