Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0000943

Physical Location & Seq

Genomic Coordinates Reverse (-)

1144989 .. 1147425

Gene Structure 2437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g01490.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAGCAGCCAGCAGAGACGTCCGCCGGACCCAGTGGCGGTGCTGAGAGGCCACCGTGCCTCCATCATGGACCTCTCTTTTCATCCTTACCAACCTCTCCTGTTCACCGGTTCATCAGACGGCGAGTTGCGGATTTGGGATACTATCCAACATCGGACTCTGTCCAGGTTTCGTGATGGAGAGGAGATAGGGGTGAAGGGGACTACCAATGAAGATACTCTGGACGACAGTAGAGACAATGGTGAAGAGGATCTGCCTGAACAGCCCAGCGCCTTTGAAGAAAATTCTCAAGATGAAGGATCGAAATATGTCGCTGTAGCAGGGGAGCAGACTTCTGAGGTTGAGATTTGGGATCTTAATACTGCAGAAAGGTTTGCACGGTTGCCTCAAAGCTGCTCTGGTGGCTCCTCGGGTATTTCTTCCAAGGAGAGCGGAATGTGCATGGCAATTCAAGCATTCTCACCATCTGAATCACAGGGATTCCTAAATGTCTTGGTTGGTTATGAGGATGGTTCCATGCTTTGGTGGGATATTAGAAATCCGGGGGTTCCAATTACCACTGTCAAGTTTCATTCAGAGCCAGTTCTAAGTCTATGCGTTGATGGGTCATGCAATGGTGGTATCTCAGGAGCCGCTGATGAGAAAGTTGTGCTGTATAGTTTGGATCCTTCAATGGGTACGTGCATGATCAAGAAAGAAATTGTTTTGGAACGACCTGGAATTTCAAGCACTTCCATTCGACCTGACGGTAAAATTTTTGCAACAGCTGGCTGGGACCACGGGTTTGGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006282 GO:0006810 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0009555 GO:0009636 GO:0009663 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010162 GO:0010431 GO:0010496 GO:0010497 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031461 GO:0031570 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034330 GO:0035670 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045216 GO:0045786 GO:0045787 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048609 GO:0048700 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0071156 GO:0071158 GO:0071695 GO:0071840 GO:0072718 GO:0080008 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090567 GO:0097327 GO:0097439 GO:0099402 GO:1902494 GO:1990234 GO:2000026 GO:2000280 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

265

Amino Acids

28.73

Weight (kDa)

4.59

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29860
fragaria_vesca	FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120
malus_domestica	MD08G1017100.v1.1 MD15G1016100.v1.1 MD15G1017900.v1.1 MD15G1018000.v1.1
prunus_persica	Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1
pyrus_communis	pycom08g01490 pycom15g01390
rosa_chinensis	RchiOBHm_Chr6g0272131 RchiOBHm_Chr6g0302231
rosa_laevigata	RLG00000011183 RLG00000013699
rosa_multiflora	Rmu_sc0013301.1_g000007 Rmu_sc0027601.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165940 Rroxscaffold_7G00196580
rosa_rugosa	Rorug06G0065900 Rorug06G0313400.1
rosa_samantha	Rh6AG183100 Rh6BG184000 Rh6BG476300 Rh6CG184400 Rh6DG176100 Rh6DG425800
rosa_wichuraiana	Rw4G012510 Rw6G015760 Rw6G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	22
AccB7I	CCANNNNNTGG	1 cut(s)	522
AccBSI	CCGCTC	1 cut(s)	432
AciI	CCGC	5 cut(s)	23, 38, 130, 432, 633
AclWI	GGATC	5 cut(s)	258, 307, 360, 659, 672
AcsI	RAATTY	3 cut(s)	283, 720, 753
AcyI	GRCGYC	1 cut(s)	19
AfaI	GTAC	1 cut(s)	679
AfiI	CCNNNNNNNGG	3 cut(s)	37, 522, 674
AgeI	ACCGGT	1 cut(s)	107
AgsI	TTSAA	4 cut(s)	278, 452, 672, 726
AjnI	CCWGG	2 cut(s)	164, 715
AluBI	AGCT	2 cut(s)	393, 767
AluI	AGCT	2 cut(s)	393, 767
Alw26I	GTCTC	2 cut(s)	10, 228
AlwI	GGATC	5 cut(s)	258, 307, 360, 659, 672
Ama87I	CYCGRG	1 cut(s)	409
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	2 cut(s)	6, 393
ApoI	RAATTY	3 cut(s)	283, 720, 753
ArsI	GACNNNNNNTTYG	1 cut(s)	767
AsiGI	ACCGGT	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	3 cut(s)	28, 70, 775
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	4 cut(s)	97, 205, 254, 453
AvaI	CYCGRG	1 cut(s)	409
AvaII	GGWCC	3 cut(s)	28, 70, 775
BamHI	GGATCC	1 cut(s)	664
BbvI	GCAGC	2 cut(s)	18, 380
BccI	CCATC	5 cut(s)	71, 170, 472, 503, 596
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	2 cut(s)	166, 717
BciVI	GTATCC	1 cut(s)	133
BclI	TGATCA	1 cut(s)	687
BcnI	CCSGG	1 cut(s)	543
BcoDI	GTCTC	2 cut(s)	10, 228
BfmI	CTRYAG	2 cut(s)	315, 363
BfoI	RGCGCY	1 cut(s)	273
BfuI	GTATCC	1 cut(s)	133
BisI	GCNGC	3 cut(s)	7, 394, 633
BlsI	GCNGC	3 cut(s)	8, 395, 634
Bme1390I	CCNGG	3 cut(s)	166, 543, 717
Bme18I	GGWCC	3 cut(s)	28, 70, 775
BmeT110I	CYCGRG	1 cut(s)	409
BmgT120I	GGNCC	3 cut(s)	28, 70, 775
BmiI	GGNNCC	7 cut(s)	30, 406, 514, 549, 631, 666, 776
BmrFI	CCNGG	3 cut(s)	166, 543, 717
BmrI	ACTGGG	1 cut(s)	26
BmuI	ACTGGG	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	273
BpuMI	CCSGG	1 cut(s)	543
BsaAI	YACGTR	1 cut(s)	681
BsaHI	GRCGYC	1 cut(s)	19
BsaJI	CCNNGG	4 cut(s)	408, 423, 542, 778
BsaWI	WCCGGW	1 cut(s)	107
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 522, 674
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	2 cut(s)	32, 581
Bse3DI	GCAATG	1 cut(s)	619
BseBI	CCWGG	2 cut(s)	166, 717
BseDI	CCNNGG	4 cut(s)	408, 423, 542, 778
BseGI	GGATG	2 cut(s)	82, 514
BseLI	CCNNNNNNNGG	3 cut(s)	37, 522, 674
BseMI	GCAATG	1 cut(s)	619
BseMII	CTCAG	3 cut(s)	35, 327, 639
BseNI	ACTGG	2 cut(s)	32, 581
BseRI	GAGGAG	2 cut(s)	197, 397
BseXI	GCAGC	2 cut(s)	18, 380
BseYI	CCCAGC	2 cut(s)	266, 771
BshFI	GGCC	1 cut(s)	51
BshTI	ACCGGT	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	409
BsiSI	CCGG	3 cut(s)	26, 108, 542
BslFI	GGGAC	2 cut(s)	214, 788
BslI	CCNNNNNNNGG	3 cut(s)	37, 522, 674
BsmAI	GTCTC	2 cut(s)	10, 228
BsmBI	CGTCTC	1 cut(s)	10
BsmFI	GGGAC	2 cut(s)	214, 788
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	51
BsoBI	CYCGRG	1 cut(s)	409
Bsp143I	GATC	5 cut(s)	250, 299, 352, 664, 687
BspACI	CCGC	5 cut(s)	23, 38, 130, 432, 633
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	3 cut(s)	36, 328, 638
BspLI	GGNNCC	7 cut(s)	30, 406, 514, 549, 631, 666, 776
BspMAI	CTGCAG	1 cut(s)	367
BspPI	GGATC	5 cut(s)	258, 307, 360, 659, 672
BsrBI	CCGCTC	1 cut(s)	432
BsrDI	GCAATG	1 cut(s)	619
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	2 cut(s)	32, 581
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	4 cut(s)	408, 423, 542, 778
BssMI	GATC	5 cut(s)	250, 299, 352, 664, 687
BssNI	GRCGYC	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	423
Bst2UI	CCWGG	2 cut(s)	166, 717
Bst4CI	ACNGT	5 cut(s)	56, 230, 381, 562, 749
Bst6I	CTCTTC	1 cut(s)	240
BstACI	GRCGYC	1 cut(s)	19
BstBAI	YACGTR	1 cut(s)	681
BstC8I	GCNNGC	2 cut(s)	11, 769
BstDEI	CTNAG	4 cut(s)	44, 336, 587, 625
BstDSI	CCRYGG	1 cut(s)	778
BstF5I	GGATG	2 cut(s)	82, 514
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	5 cut(s)	253, 302, 355, 667, 690
BstMAI	GTCTC	2 cut(s)	10, 228
BstMBI	GATC	5 cut(s)	250, 299, 352, 664, 687
BstMWI	GCNNNNNNNGC	4 cut(s)	262, 402, 438, 452
BstNI	CCWGG	2 cut(s)	166, 717
BstSCI	CCNGG	3 cut(s)	164, 541, 715
BstSFI	CTRYAG	2 cut(s)	315, 363
BstV1I	GCAGC	2 cut(s)	18, 380
BstX2I	RGATCY	3 cut(s)	250, 352, 664
BstXI	CCANNNNNNTGG	1 cut(s)	785
BstYI	RGATCY	3 cut(s)	250, 352, 664
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	778
BtsCI	GGATG	2 cut(s)	82, 514
BtsIMutI	CAGTG	2 cut(s)	39, 558
Cac8I	GCNNGC	2 cut(s)	11, 769
CfoI	GCGC	1 cut(s)	272
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	3 cut(s)	28, 70, 775
Csp6I	GTAC	1 cut(s)	678
CspAI	ACCGGT	1 cut(s)	107
CviAII	CATG	5 cut(s)	67, 442, 517, 609, 685
CviJI	RGCY	9 cut(s)	9, 51, 265, 393, 405, 580, 632, 767, 771
CviKI_1	RGCY	9 cut(s)	9, 51, 265, 393, 405, 580, 632, 767, 771
CviQI	GTAC	1 cut(s)	678
DdeI	CTNAG	4 cut(s)	44, 336, 587, 625
DpnI	GATC	5 cut(s)	252, 301, 354, 666, 689
DpnII	GATC	5 cut(s)	250, 299, 352, 664, 687
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
EciI	GGCGGA	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	423
Eco47I	GGWCC	3 cut(s)	28, 70, 775
Eco88I	CYCGRG	1 cut(s)	409
EcoRII	CCWGG	2 cut(s)	164, 715
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
Esp3I	CGTCTC	1 cut(s)	10
FaeI	CATG	5 cut(s)	70, 445, 520, 612, 688
FaqI	GGGAC	2 cut(s)	214, 788
FatI	CATG	5 cut(s)	66, 441, 516, 608, 684
FbaI	TGATCA	1 cut(s)	687
Fnu4HI	GCNGC	3 cut(s)	7, 394, 633
FokI	GGATG	2 cut(s)	69, 521
Fsp4HI	GCNGC	3 cut(s)	7, 394, 633
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	3 cut(s)	7, 394, 633
GsaI	CCCAGC	2 cut(s)	270, 775
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	3 cut(s)	26, 108, 542
HhaI	GCGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	19
Hin1II	CATG	5 cut(s)	70, 445, 520, 612, 688
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HinfI	GANTC	3 cut(s)	157, 470, 480
HpaII	CCGG	3 cut(s)	26, 108, 542
HphI	GGTGA	4 cut(s)	97, 205, 254, 453
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	5 cut(s)	118, 156, 337, 469, 577
Hpy188III	TCNNGA	5 cut(s)	173, 221, 290, 627, 691
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	3 cut(s)	190, 290, 678
HpyCH4III	ACNGT	5 cut(s)	56, 230, 381, 562, 749
HpyCH4IV	ACGT	2 cut(s)	19, 680
HpyCH4V	TGCA	6 cut(s)	365, 377, 441, 612, 684, 761
HpyF10VI	GCNNNNNNNGC	4 cut(s)	262, 402, 438, 452
HpyF3I	CTNAG	4 cut(s)	44, 336, 587, 625
HpySE526I	ACGT	2 cut(s)	19, 680
Hsp92I	GRCGYC	1 cut(s)	19
Hsp92II	CATG	5 cut(s)	70, 445, 520, 612, 688
HspAI	GCGC	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	687
Kzo9I	GATC	5 cut(s)	250, 299, 352, 664, 687
LmnI	GCTCC	3 cut(s)	325, 410, 629
Lsp1109I	GCAGC	2 cut(s)	18, 380
MaeII	ACGT	2 cut(s)	19, 680
MalI	GATC	5 cut(s)	252, 301, 354, 666, 689
MbiI	CCGCTC	1 cut(s)	432
MboI	GATC	5 cut(s)	250, 299, 352, 664, 687
MboII	GAAGA	4 cut(s)	224, 257, 290, 411
MflI	RGATCY	3 cut(s)	250, 352, 664
MluCI	AATT	6 cut(s)	283, 447, 552, 699, 720, 753
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	172
MseI	TTAA	1 cut(s)	357
MspA1I	CMGCKG	2 cut(s)	635, 767
MspI	CCGG	3 cut(s)	26, 108, 542
MspR9I	CCNGG	3 cut(s)	166, 543, 717
Mva1269I	GAATGC	1 cut(s)	455
MvaI	CCWGG	2 cut(s)	166, 717
MwoI	GCNNNNNNNGC	4 cut(s)	262, 402, 438, 452
NciI	CCSGG	1 cut(s)	543
NdeII	GATC	5 cut(s)	250, 299, 352, 664, 687
NlaIII	CATG	5 cut(s)	70, 445, 520, 612, 688
NlaIV	GGNNCC	7 cut(s)	30, 406, 514, 549, 631, 666, 776
PctI	GAATGC	1 cut(s)	455
PfeI	GAWTC	2 cut(s)	470, 480
PflFI	GACNNNGTC	1 cut(s)	160
PflMI	CCANNNNNTGG	1 cut(s)	522
PinAI	ACCGGT	1 cut(s)	107
PkrI	GCNGC	3 cut(s)	8, 395, 634
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Ppu21I	YACGTR	1 cut(s)	681
Psp6I	CCWGG	2 cut(s)	164, 715
PspFI	CCCAGC	2 cut(s)	266, 771
PspGI	CCWGG	2 cut(s)	164, 715
PspN4I	GGNNCC	7 cut(s)	30, 406, 514, 549, 631, 666, 776
PspPI	GGNCC	3 cut(s)	28, 70, 775
PstI	CTGCAG	1 cut(s)	367
PsuI	RGATCY	3 cut(s)	250, 352, 664
PsyI	GACNNNGTC	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	767
RsaI	GTAC	1 cut(s)	679
RsaNI	GTAC	1 cut(s)	678
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	3 cut(s)	7, 394, 633
Sau3AI	GATC	5 cut(s)	250, 299, 352, 664, 687
Sau96I	GGNCC	3 cut(s)	28, 70, 775
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	3 cut(s)	166, 543, 717
SfcI	CTRYAG	2 cut(s)	315, 363
SinI	GGWCC	3 cut(s)	28, 70, 775
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
Sse9I	AATT	6 cut(s)	283, 447, 552, 699, 720, 753
SsiI	CCGC	5 cut(s)	23, 38, 130, 432, 633
StyD4I	CCNGG	3 cut(s)	164, 541, 715
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	5 cut(s)	56, 230, 381, 562, 749
TaiI	ACGT	2 cut(s)	22, 683
TaqI	TCGA	2 cut(s)	302, 739
TasI	AATT	6 cut(s)	283, 447, 552, 699, 720, 753
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	2 cut(s)	470, 480
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	2 cut(s)	39, 565
TseI	GCWGC	2 cut(s)	6, 393
TspDTI	ATGAA	5 cut(s)	71, 102, 225, 309, 560
TspRI	CASTG	2 cut(s)	39, 565
Tth111I	GACNNNGTC	1 cut(s)	160
Van91I	CCANNNNNTGG	1 cut(s)	522
VpaK11BI	GGWCC	3 cut(s)	28, 70, 775
XapI	RAATTY	3 cut(s)	283, 720, 753
ZraI	GACGTC	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.