Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000943

Physical Location & Seq

Genomic Coordinates Reverse (-)

33854159 .. 33860480

Gene Structure 6322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG184000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGAACAAACAGAGACGGCCACCGCCGGACCCGGTGGCTGTGCTGAGAGGTCACCGTGCCTCTGTCACCGACCTTTGTTTCCATCCATCTCAACCTCTCTTATACACTGGTTCCGCAGACGGTGAGTTGCGGATTTGGGATACACTGCAGAATCGGACGATAGTATCAGCAGGGGTGCATAATGCGGCACATGGGGTTGCTTCTGTTGCTTGTAGCTCTTCAATTGGAGCTGACAAAGTTATCAGCCAGGGTAGGGATGGAACTGTTAAGTGCTGGGATATTGGAGATGGAGGTCTATCCAGGGCTCCCTCTGTGATGATTGCAACAAATGCTTACCACTTCTGTAAGCTTTCGTTGGTAAAGAGACCTCATTCTTGTTCTACACAAGTTGACGGGTCAAAGCATCATGACGGAGGTGAGAGGGAGACTACTCTGGATGATAGTGAAGAAAAGGTCCAAGGGAATCTGTCTGAGCTGTCTAGAACCAATGAAGAAAATACTGAAGTTGGAGGATCTAAATACATTGCTATAGCAGGAGAGCAGTCTTCTGAGGTTGAGATTTGGGATCTTAATACTGCAGAAAGGTGTATGCGACTACCTCAAAGCAGTTCTGCTGGCTCCTCAGCTATTTCTACCAAGGAAAGAGGAATGTGCATGGCAGTTCAAGCATTTTTACCATCAGAATCACAGGGATTCCTAAATGTCGTGGCTGGTTATGAGGATGGCTCCATGCTTTGGTGGGATATTAGAAATCCAGGTGTTCCAGTTACATCTGTCAAGTTTCATTCAGAGCCAGTTTTAAGCCTATGCATTGATGATTCATGCAATGGTGGTATCTCAGGAGCTGCAGATGAAAAAATTGTGCTCTACAGTTTGGAGAATTCCATGGGTACATGTGTGATAAAAAAAGAAATTGATTTGGAGCGACCTGGCATATCAAGCACCTTTATTCGACCTGATGGTAAAATATTTGCAACAGCTGGCTGGGATCACAGAGTGAGAGTATATAACTATCGCAAAGGAAATGCTTTGGCAATATTGAAGTATCACCATGCAACGTGTAATGCAGTCTCTTATTCACCAGACTGTAAGCTCATGGCCTCTGCATCAGAGGACACAGTGGTGGCACTTTGGAAACTCTATACTCCTCAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006282 GO:0006810 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0009555 GO:0009636 GO:0009663 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010162 GO:0010431 GO:0010496 GO:0010497 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031461 GO:0031570 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034330 GO:0035670 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045216 GO:0045786 GO:0045787 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048609 GO:0048700 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0071156 GO:0071158 GO:0071695 GO:0071840 GO:0072718 GO:0080008 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090567 GO:0097327 GO:0097439 GO:0099402 GO:1902494 GO:1990234 GO:2000026 GO:2000280 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

385

Amino Acids

41.7

Weight (kDa)

5.96

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40	PF00400	11 - 47	1.2e-10	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	12 - 98	6.2e-10	WDR5 beta-propeller domain
WD40_Prp19	PF24814	12 - 97	2.8e-08	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	13 - 95	5.1e-12	WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	13 - 94	5.8e-08	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	14 - 110	5.3e-09	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	182 - 302	3.2e-07	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	214 - 379	8.8e-10	WDR3 second beta-propeller domain
WD40_Prp19	PF24814	234 - 380	7.1e-16	Prp19 WD40 domain
WD40_Gbeta	PF25391	234 - 378	7.6e-07	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	235 - 381	8.1e-16	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	235 - 382	3.3e-10	CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	258 - 382	1.1e-07	WDR36/Utp21 second beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	268 - 380	8.2e-08	MABP1/WDR62 second WD40 domain
Beta-prop_EML_2	PF23414	269 - 379	4.5e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	310 - 382	1.6e-13	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	312 - 381	4.2e-08	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	317 - 382	2e-06	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29860
fragaria_vesca	FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120
malus_domestica	MD08G1017100.v1.1 MD15G1016100.v1.1 MD15G1017900.v1.1 MD15G1018000.v1.1
prunus_persica	Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1
pyrus_communis	pycom08g01490 pycom15g01390
rosa_chinensis	RchiOBHm_Chr6g0272131 RchiOBHm_Chr6g0302231
rosa_laevigata	RLG00000011183 RLG00000013699
rosa_multiflora	Rmu_sc0013301.1_g000007 Rmu_sc0027601.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165940 Rroxscaffold_7G00196580
rosa_rugosa	Rorug06G0065900 Rorug06G0313400.1
rosa_samantha	Rh6AG183100 Rh6BG184000 Rh6BG476300 Rh6CG184400 Rh6DG176100 Rh6DG425800
rosa_wichuraiana	Rw4G012510 Rw6G015760 Rw6G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	735
AciI	CCGC	4 cut(s)	23, 114, 130, 185
AclWI	GGATC	3 cut(s)	520, 573, 996
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	880
AcuI	CTGAAG	1 cut(s)	522
AdeI	CACNNNGTG	1 cut(s)	997
AfaI	GTAC	1 cut(s)	892
AfiI	CCNNNNNNNGG	2 cut(s)	253, 735
AflIII	ACRYGT	2 cut(s)	893, 1058
AgsI	TTSAA	3 cut(s)	222, 665, 1042
AjnI	CCWGG	4 cut(s)	246, 299, 754, 928
AleI	CACNNNNGTG	1 cut(s)	1121
AluBI	AGCT	8 cut(s)	216, 230, 349, 475, 626, 845, 980, 1093
AluI	AGCT	8 cut(s)	216, 230, 349, 475, 626, 845, 980, 1093
Alw21I	GWGCWC	1 cut(s)	867
Alw26I	GTCTC	4 cut(s)	7, 358, 419, 1075
AlwI	GGATC	3 cut(s)	520, 573, 996
AlwNI	CAGNNNCTG	1 cut(s)	845
AoxI	GGCC	2 cut(s)	17, 1098
ApeKI	GCWGC	1 cut(s)	845
ApoI	RAATTY	1 cut(s)	880
AspS9I	GGNCC	2 cut(s)	28, 454
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	6 cut(s)	44, 58, 134, 428, 1040, 1071
AvaII	GGWCC	2 cut(s)	28, 454
BaeI	ACNNNNGTAYC	4 cut(s)	147, 180, 882, 915
BanII	GRGCYC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	867
BbvCI	CCTCAGC	1 cut(s)	622
BbvI	GCAGC	1 cut(s)	832
BccI	CCATC	7 cut(s)	90, 94, 251, 281, 685, 716, 953
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	4 cut(s)	248, 301, 756, 930
BciVI	GTATCC	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	4 cut(s)	7, 358, 419, 1075
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	5 cut(s)	146, 528, 576, 846, 868
BfuI	GTATCC	1 cut(s)	133
BisI	GCNGC	2 cut(s)	186, 846
BlsI	GCNGC	2 cut(s)	187, 847
Bme1390I	CCNGG	5 cut(s)	32, 248, 301, 756, 930
Bme18I	GGWCC	2 cut(s)	28, 454
BmgT120I	GGNCC	2 cut(s)	28, 454
BmiI	GGNNCC	5 cut(s)	30, 112, 306, 619, 727
BmrFI	CCNGG	5 cut(s)	32, 248, 301, 756, 930
BmsI	GCATC	2 cut(s)	412, 1115
BpiI	GAAGAC	1 cut(s)	537
BplI	GAGNNNNNCTC	2 cut(s)	710, 742
Bpu10I	CCTNAGC	1 cut(s)	622
BpuMI	CCSGG	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	358
BsaJI	CCNNGG	5 cut(s)	247, 300, 457, 636, 885
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 735
Bse1I	ACTGG	3 cut(s)	112, 764, 794
Bse3DI	GCAATG	2 cut(s)	522, 832
BseBI	CCWGG	4 cut(s)	248, 301, 756, 930
BseDI	CCNNGG	5 cut(s)	247, 300, 457, 636, 885
BseGI	GGATG	4 cut(s)	82, 262, 442, 727
BseLI	CCNNNNNNNGG	2 cut(s)	253, 735
BseMI	GCAATG	2 cut(s)	522, 832
BseMII	CTCAG	5 cut(s)	35, 462, 540, 636, 852
BseNI	ACTGG	3 cut(s)	112, 764, 794
BseRI	GAGGAG	2 cut(s)	610, 1137
BseXI	GCAGC	1 cut(s)	832
BseYI	CCCAGC	2 cut(s)	273, 984
BshFI	GGCC	2 cut(s)	19, 1100
BsiHKAI	GWGCWC	1 cut(s)	867
BsiSI	CCGG	2 cut(s)	26, 32
BslI	CCNNNNNNNGG	2 cut(s)	253, 735
BsmAI	GTCTC	4 cut(s)	7, 358, 419, 1075
BsmBI	CGTCTC	1 cut(s)	7
BsnI	GGCC	2 cut(s)	19, 1100
Bso31I	GGTCTC	1 cut(s)	358
Bsp1286I	GDGCHC	2 cut(s)	307, 867
Bsp143I	GATC	3 cut(s)	512, 565, 988
Bsp19I	CCATGG	1 cut(s)	885
BspACI	CCGC	4 cut(s)	23, 114, 130, 185
BspANI	GGCC	2 cut(s)	19, 1100
BspCNI	CTCAG	5 cut(s)	36, 463, 541, 635, 851
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	5 cut(s)	30, 112, 306, 619, 727
BspMAI	CTGCAG	3 cut(s)	150, 580, 850
BspPI	GGATC	3 cut(s)	520, 573, 996
BspQI	GCTCTTC	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	358
BsrDI	GCAATG	2 cut(s)	522, 832
BsrI	ACTGG	3 cut(s)	112, 764, 794
BssECI	CCNNGG	5 cut(s)	247, 300, 457, 636, 885
BssMI	GATC	3 cut(s)	512, 565, 988
BssT1I	CCWWGG	3 cut(s)	457, 636, 885
Bst2UI	CCWGG	4 cut(s)	248, 301, 756, 930
Bst4CI	ACNGT	6 cut(s)	56, 122, 265, 872, 1088, 1120
Bst6I	CTCTTC	1 cut(s)	223
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	616, 982
BstDEI	CTNAG	5 cut(s)	44, 471, 549, 622, 838
BstDSI	CCRYGG	1 cut(s)	885
BstEII	GGTNACC	1 cut(s)	50
BstF5I	GGATG	4 cut(s)	82, 262, 442, 727
BstKTI	GATC	3 cut(s)	515, 568, 991
BstMAI	GTCTC	4 cut(s)	7, 358, 419, 1075
BstMBI	GATC	3 cut(s)	512, 565, 988
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 329, 665, 939
BstNI	CCWGG	4 cut(s)	248, 301, 756, 930
BstNSI	RCATGY	1 cut(s)	897
BstPI	GGTNACC	1 cut(s)	50
BstSCI	CCNGG	5 cut(s)	30, 246, 299, 754, 928
BstSFI	CTRYAG	5 cut(s)	146, 528, 576, 846, 868
BstV1I	GCAGC	1 cut(s)	832
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	2 cut(s)	512, 565
BstYI	RGATCY	2 cut(s)	512, 565
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	19, 1100
BtgI	CCRYGG	1 cut(s)	885
BtsCI	GGATG	4 cut(s)	82, 262, 442, 727
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	3 cut(s)	105, 143, 1125
Cac8I	GCNNGC	2 cut(s)	616, 982
CaiI	CAGNNNCTG	1 cut(s)	845
CciI	TCATGA	1 cut(s)	406
Cfr13I	GGNCC	2 cut(s)	28, 454
Csp6I	GTAC	1 cut(s)	891
CviAII	CATG	9 cut(s)	191, 407, 655, 730, 822, 886, 894, 1052, 1096
CviQI	GTAC	1 cut(s)	891
DdeI	CTNAG	5 cut(s)	44, 471, 549, 622, 838
DpnI	GATC	3 cut(s)	514, 567, 990
DpnII	GATC	3 cut(s)	512, 565, 988
DraIII	CACNNNGTG	1 cut(s)	997
EaeI	YGGCCR	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
Eco130I	CCWWGG	3 cut(s)	457, 636, 885
Eco24I	GRGCYC	1 cut(s)	307
Eco31I	GGTCTC	1 cut(s)	358
Eco47I	GGWCC	2 cut(s)	28, 454
Eco57I	CTGAAG	1 cut(s)	522
Eco91I	GGTNACC	1 cut(s)	50
EcoO65I	GGTNACC	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	880
EcoRII	CCWGG	4 cut(s)	246, 299, 754, 928
EcoT14I	CCWWGG	3 cut(s)	457, 636, 885
EcoT22I	ATGCAT	1 cut(s)	812
EcoT38I	GRGCYC	1 cut(s)	307
ErhI	CCWWGG	3 cut(s)	457, 636, 885
Esp3I	CGTCTC	1 cut(s)	7
FaeI	CATG	9 cut(s)	194, 410, 658, 733, 825, 889, 897, 1055, 1099
FatI	CATG	9 cut(s)	190, 406, 654, 729, 821, 885, 893, 1051, 1095
Fnu4HI	GCNGC	2 cut(s)	186, 846
FokI	GGATG	4 cut(s)	69, 269, 449, 734
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	2 cut(s)	186, 846
FspBI	CTAG	1 cut(s)	480
GluI	GCNGC	2 cut(s)	186, 846
GsaI	CCCAGC	2 cut(s)	277, 988
HaeIII	GGCC	2 cut(s)	19, 1100
HapII	CCGG	2 cut(s)	26, 32
Hin1II	CATG	9 cut(s)	194, 410, 658, 733, 825, 889, 897, 1055, 1099
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	5 cut(s)	151, 463, 683, 693, 818
HpaII	CCGG	2 cut(s)	26, 32
HphI	GGTGA	6 cut(s)	44, 58, 134, 428, 1040, 1071
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	6 cut(s)	156, 472, 550, 682, 790, 1111
Hpy188III	TCNNGA	4 cut(s)	407, 434, 480, 840
Hpy8I	GTNNAC	1 cut(s)	391
HpyCH4III	ACNGT	6 cut(s)	56, 122, 265, 872, 1088, 1120
HpyCH4IV	ACGT	1 cut(s)	1058
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 329, 665, 939
HpyF3I	CTNAG	5 cut(s)	44, 471, 549, 622, 838
HpySE526I	ACGT	1 cut(s)	1058
Hsp92II	CATG	9 cut(s)	194, 410, 658, 733, 825, 889, 897, 1055, 1099
Kzo9I	GATC	3 cut(s)	512, 565, 988
LguI	GCTCTTC	1 cut(s)	223
LmnI	GCTCC	6 cut(s)	227, 310, 623, 731, 842, 922
Lsp1109I	GCAGC	1 cut(s)	832
LweI	GCATC	2 cut(s)	412, 1115
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	1 cut(s)	1058
MaeIII	GTNAC	3 cut(s)	50, 64, 766
MalI	GATC	3 cut(s)	514, 567, 990
MboI	GATC	3 cut(s)	512, 565, 988
MboII	GAAGA	4 cut(s)	210, 458, 503, 537
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	2 cut(s)	512, 565
MhlI	GDGCHC	2 cut(s)	307, 867
MluCI	AATT	4 cut(s)	222, 858, 880, 912
MmeI	TCCRAC	1 cut(s)	487
Mph1103I	ATGCAT	1 cut(s)	812
MseI	TTAA	3 cut(s)	267, 570, 800
MslI	CAYNNNNRTG	1 cut(s)	1121
MspA1I	CMGCKG	1 cut(s)	980
MspI	CCGG	2 cut(s)	26, 32
MspR9I	CCNGG	5 cut(s)	32, 248, 301, 756, 930
MunI	CAATTG	1 cut(s)	222
MvaI	CCWGG	4 cut(s)	248, 301, 756, 930
MwoI	GCNNNNNNNGC	4 cut(s)	206, 329, 665, 939
NciI	CCSGG	1 cut(s)	32
NcoI	CCATGG	1 cut(s)	885
NdeII	GATC	3 cut(s)	512, 565, 988
NlaIII	CATG	9 cut(s)	194, 410, 658, 733, 825, 889, 897, 1055, 1099
NlaIV	GGNNCC	5 cut(s)	30, 112, 306, 619, 727
NmuCI	GTSAC	2 cut(s)	50, 64
NsiI	ATGCAT	1 cut(s)	812
NspI	RCATGY	1 cut(s)	897
OliI	CACNNNNGTG	1 cut(s)	1121
PagI	TCATGA	1 cut(s)	406
PciI	ACATGT	1 cut(s)	893
PciSI	GCTCTTC	1 cut(s)	223
PfeI	GAWTC	5 cut(s)	151, 463, 683, 693, 818
PflMI	CCANNNNNTGG	1 cut(s)	735
PkrI	GCNGC	2 cut(s)	187, 847
PscI	ACATGT	1 cut(s)	893
Psp6I	CCWGG	4 cut(s)	246, 299, 754, 928
PspEI	GGTNACC	1 cut(s)	50
PspFI	CCCAGC	2 cut(s)	273, 984
PspGI	CCWGG	4 cut(s)	246, 299, 754, 928
PspN4I	GGNNCC	5 cut(s)	30, 112, 306, 619, 727
PspPI	GGNCC	2 cut(s)	28, 454
PstI	CTGCAG	3 cut(s)	150, 580, 850
PstNI	CAGNNNCTG	1 cut(s)	845
PsuI	RGATCY	2 cut(s)	512, 565
PvuII	CAGCTG	1 cut(s)	980
RsaI	GTAC	1 cut(s)	892
RsaNI	GTAC	1 cut(s)	891
RseI	CAYNNNNRTG	1 cut(s)	1121
SapI	GCTCTTC	1 cut(s)	223
SaqAI	TTAA	3 cut(s)	267, 570, 800
SatI	GCNGC	2 cut(s)	186, 846
Sau3AI	GATC	3 cut(s)	512, 565, 988
Sau96I	GGNCC	2 cut(s)	28, 454
ScrFI	CCNGG	5 cut(s)	32, 248, 301, 756, 930
SduI	GDGCHC	2 cut(s)	307, 867
SfaNI	GCATC	2 cut(s)	412, 1115
SfcI	CTRYAG	5 cut(s)	146, 528, 576, 846, 868
SinI	GGWCC	2 cut(s)	28, 454
SmiMI	CAYNNNNRTG	1 cut(s)	1121
Sse9I	AATT	4 cut(s)	222, 858, 880, 912
SsiI	CCGC	4 cut(s)	23, 114, 130, 185
SspI	AATATT	2 cut(s)	969, 1038
SspMI	CTAG	1 cut(s)	480
StyD4I	CCNGG	5 cut(s)	30, 246, 299, 754, 928
StyI	CCWWGG	3 cut(s)	457, 636, 885
TaaI	ACNGT	6 cut(s)	56, 122, 265, 872, 1088, 1120
TaiI	ACGT	1 cut(s)	1061
TaqI	TCGA	1 cut(s)	952
TasI	AATT	4 cut(s)	222, 858, 880, 912
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	5 cut(s)	151, 463, 683, 693, 818
Tru1I	TTAA	3 cut(s)	267, 570, 800
Tru9I	TTAA	3 cut(s)	267, 570, 800
TscAI	CASTG	3 cut(s)	112, 150, 1125
TseFI	GTSAC	2 cut(s)	50, 64
TseI	GCWGC	1 cut(s)	845
Tsp45I	GTSAC	2 cut(s)	50, 64
TspDTI	ATGAA	5 cut(s)	17, 504, 773, 810, 867
TspGWI	ACGGA	1 cut(s)	426
TspRI	CASTG	3 cut(s)	112, 150, 1125
Van91I	CCANNNNNTGG	1 cut(s)	735
VpaK11BI	GGWCC	2 cut(s)	28, 454
XapI	RAATTY	1 cut(s)	880
XbaI	TCTAGA	1 cut(s)	479
XceI	RCATGY	1 cut(s)	897
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XspI	CTAG	1 cut(s)	480
Zsp2I	ATGCAT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.