RLG00000013699

Guanine nucleotide-binding protein subunit beta-like protein 1 homolog

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
36106648 .. 36110382
3735 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013699

Sequence Viewer

Length: 1083 bp
ATGAACAAACAGAGACGGCCACCGCCGGACCCAGTGGCTGTGCTGAGAGGTCACCGTGCCTCTGTCACCGACCTTTGTTTCCATCCATCTCAACCTCTCTTATACACTGGTTCCGCAGACGGTGAGTTGCGGATTTGGGACACACTGCAGAATCGGACGATAGCATCAGCAGGGGTGCATAATGCGGCACATGGGGTTGCTTCTGTTGCTTGTAGCTCTTCAATTGGAGCTGACAAAGTTATCAGCCAGGGTAGGGATGGAACTGTTAAGTGCTGGGATATTGGAGATGGAGGTCTATCCAGGGCTCCCTCTGTGATGATTGCGACAAATGCTTACCACTTCTGTAAGCTTTCGTTGGTGAAGAGGCCTCATTCTTGTTCTACACAAGTTGACGGGCCAAAGCATCATGACGGAGGTGAGAGGGAGACTACTGATGCAGATACTCTGGATGGTAGTGAAGAAAAGGTCCAAGGGTTTCTGTCTGAGCTGTCTAGAACCAATGAAGAAAGGTGTATGCGACTACCTCAAAGCTGTTCTGCTGGCTCCTCAGCTATTTCTACCAAGGAAAGAGGAATGTGCATGGCAGTTCAAGCATTTTTACCATCAGAATCACAGGGATTCCTAAATGTCGTGGCTGGTTATGAGGATGGCTCCATGCTTTGGTGGGATATTAGAAATCCAGGTGTTCCAGTTACATCTGTCAAGTTTCATTCAGAGCCAGTTTTAAGCCTATGCATTGATGATTCATGCAATGGTGGTATCTCAGGAGCTGCAGATGAAAAAATTGTGCTCTACAGTTTGGATAATTCCATGGGTACATGTGTGATCAAAAAAGAAATTGATTTGGAGCGACCTGGCATATCAAGCACCTCTATTCGACCTGATGGTAAAATATTTGCAACAGCTGGCTGGGATCACAGAGTGAGAGTATATAACTATCGCAAAGGAAATGCTTTGGCAATATTGAAGTATCACCATGCAACGTGTAATGCAGTCTCTTATTCACCAGATTGTAAGCTAATGGCCTCTGCATCAGAGGACACAGTGGTGGCACTTTGGAAACTCTATACTCCTCAAACCTGA

Protein Analysis

361

Amino Acids

38.9

Weight (kDa)

6.45

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40 PF00400 11 - 47 1.1e-10 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 12 - 98 2.8e-10 WDR5 beta-propeller domain
WD40_Prp19 PF24814 12 - 97 1.5e-08 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 13 - 95 7.1e-12 WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd PF25047 13 - 94 6.5e-08 TEP-1 second beta-propeller
Beta-prop_THOC3 PF25174 14 - 110 1.4e-09 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 197 - 354 5.9e-10 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 201 - 355 6.6e-17 Prp19 WD40 domain
WD40_Gbeta PF25391 209 - 353 6.7e-07 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 210 - 356 1.8e-16 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 210 - 357 4.9e-11 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 210 - 357 1.8e-06 TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 211 - 357 8.6e-08 WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st PF24817 231 - 354 2e-07 WDHD1 first WD40 domain
WD40_MABP1-WDR62_2nd PF24782 244 - 355 4.7e-08 MABP1/WDR62 second WD40 domain
Beta-prop_EML_2 PF23414 244 - 354 1.6e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 285 - 357 4.4e-14 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 287 - 356 1.8e-08 WDR3 first beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 660
AciI CCGC 4 cut(s) 23, 114, 130, 185
AclWI GGATC 1 cut(s) 921
AcoI YGGCCR 1 cut(s) 17
AdeI CACNNNGTG 1 cut(s) 922
AfaI GTAC 1 cut(s) 817
AfiI CCNNNNNNNGG 2 cut(s) 253, 660
AflIII ACRYGT 2 cut(s) 818, 983
AgsI TTSAA 3 cut(s) 222, 590, 967
AjnI CCWGG 4 cut(s) 246, 299, 679, 853
AleI CACNNNNGTG 1 cut(s) 1046
AluBI AGCT 9 cut(s) 216, 230, 349, 487, 531, 551, 770, 905, 1018
AluI AGCT 9 cut(s) 216, 230, 349, 487, 531, 551, 770, 905, 1018
Alw21I GWGCWC 1 cut(s) 792
Alw26I GTCTC 3 cut(s) 7, 419, 1000
AlwI GGATC 1 cut(s) 921
AlwNI CAGNNNCTG 2 cut(s) 38, 770
AoxI GGCC 4 cut(s) 17, 365, 395, 1023
ApeKI GCWGC 1 cut(s) 770
AspS9I GGNCC 3 cut(s) 28, 395, 466
AsuHPI GGTGA 7 cut(s) 44, 58, 134, 370, 428, 965, 996
AvaII GGWCC 2 cut(s) 28, 466
BaeI ACNNNNGTAYC 2 cut(s) 807, 840
BanII GRGCYC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 792
BbvCI CCTCAGC 1 cut(s) 547
BbvI GCAGC 1 cut(s) 757
BccI CCATC 8 cut(s) 90, 94, 251, 281, 443, 610, 641, 878
BceAI ACGGC 1 cut(s) 32
BciT130I CCWGG 4 cut(s) 248, 301, 681, 855
BclI TGATCA 1 cut(s) 825
BcoDI GTCTC 3 cut(s) 7, 419, 1000
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 3 cut(s) 146, 771, 793
BisI GCNGC 2 cut(s) 186, 771
BlsI GCNGC 2 cut(s) 187, 772
Bme1390I CCNGG 4 cut(s) 248, 301, 681, 855
Bme18I GGWCC 2 cut(s) 28, 466
BmgT120I GGNCC 3 cut(s) 28, 395, 466
BmiI GGNNCC 5 cut(s) 30, 112, 306, 544, 652
BmrFI CCNGG 4 cut(s) 248, 301, 681, 855
BmrI ACTGGG 1 cut(s) 26
BmsI GCATC 4 cut(s) 173, 412, 424, 1040
BmuI ACTGGG 1 cut(s) 26
BplI GAGNNNNNCTC 2 cut(s) 635, 667
Bpu10I CCTNAGC 1 cut(s) 547
BsaJI CCNNGG 5 cut(s) 247, 300, 469, 561, 810
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 660
Bse1I ACTGG 4 cut(s) 32, 112, 689, 719
Bse3DI GCAATG 1 cut(s) 757
BseBI CCWGG 4 cut(s) 248, 301, 681, 855
BseDI CCNNGG 5 cut(s) 247, 300, 469, 561, 810
BseGI GGATG 4 cut(s) 82, 262, 454, 652
BseLI CCNNNNNNNGG 2 cut(s) 253, 660
BseMI GCAATG 1 cut(s) 757
BseMII CTCAG 4 cut(s) 35, 474, 561, 777
BseNI ACTGG 4 cut(s) 32, 112, 689, 719
BseRI GAGGAG 2 cut(s) 535, 1062
BseXI GCAGC 1 cut(s) 757
BseYI CCCAGC 2 cut(s) 273, 909
BshFI GGCC 4 cut(s) 19, 367, 397, 1025
BsiHKAI GWGCWC 1 cut(s) 792
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 253, 660
BsmAI GTCTC 3 cut(s) 7, 419, 1000
BsmBI CGTCTC 1 cut(s) 7
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 4 cut(s) 19, 367, 397, 1025
Bsp1286I GDGCHC 2 cut(s) 307, 792
Bsp143I GATC 2 cut(s) 825, 913
Bsp19I CCATGG 1 cut(s) 810
BspACI CCGC 4 cut(s) 23, 114, 130, 185
BspANI GGCC 4 cut(s) 19, 367, 397, 1025
BspCNI CTCAG 4 cut(s) 36, 475, 560, 776
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 5 cut(s) 30, 112, 306, 544, 652
BspMAI CTGCAG 2 cut(s) 150, 775
BspPI GGATC 1 cut(s) 921
BspQI GCTCTTC 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 757
BsrI ACTGG 4 cut(s) 32, 112, 689, 719
BssECI CCNNGG 5 cut(s) 247, 300, 469, 561, 810
BssMI GATC 2 cut(s) 825, 913
BssT1I CCWWGG 3 cut(s) 469, 561, 810
Bst2UI CCWGG 4 cut(s) 248, 301, 681, 855
Bst4CI ACNGT 5 cut(s) 56, 122, 265, 797, 1045
Bst6I CTCTTC 2 cut(s) 223, 356
BstC8I GCNNGC 2 cut(s) 541, 907
BstDEI CTNAG 4 cut(s) 44, 483, 547, 763
BstDSI CCRYGG 1 cut(s) 810
BstEII GGTNACC 1 cut(s) 50
BstF5I GGATG 4 cut(s) 82, 262, 454, 652
BstKTI GATC 2 cut(s) 828, 916
BstMAI GTCTC 3 cut(s) 7, 419, 1000
BstMBI GATC 2 cut(s) 825, 913
BstMWI GCNNNNNNNGC 4 cut(s) 206, 329, 590, 864
BstNI CCWGG 4 cut(s) 248, 301, 681, 855
BstNSI RCATGY 1 cut(s) 822
BstPI GGTNACC 1 cut(s) 50
BstSCI CCNGG 4 cut(s) 246, 299, 679, 853
BstSFI CTRYAG 3 cut(s) 146, 771, 793
BstV1I GCAGC 1 cut(s) 757
BsuRI GGCC 4 cut(s) 19, 367, 397, 1025
BtgI CCRYGG 1 cut(s) 810
BtsCI GGATG 4 cut(s) 82, 262, 454, 652
BtsI GCAGTG 1 cut(s) 143
BtsIMutI CAGTG 4 cut(s) 39, 105, 143, 1050
Cac8I GCNNGC 2 cut(s) 541, 907
CaiI CAGNNNCTG 2 cut(s) 38, 770
CciI TCATGA 1 cut(s) 406
Cfr13I GGNCC 3 cut(s) 28, 395, 466
Csp6I GTAC 1 cut(s) 816
CviAII CATG 8 cut(s) 191, 407, 580, 655, 747, 811, 819, 977
CviQI GTAC 1 cut(s) 816
DdeI CTNAG 4 cut(s) 44, 483, 547, 763
DpnI GATC 2 cut(s) 827, 915
DpnII GATC 2 cut(s) 825, 913
DraIII CACNNNGTG 1 cut(s) 922
EaeI YGGCCR 1 cut(s) 17
Eam1104I CTCTTC 2 cut(s) 223, 356
EarI CTCTTC 2 cut(s) 223, 356
Eco130I CCWWGG 3 cut(s) 469, 561, 810
Eco147I AGGCCT 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 307
Eco47I GGWCC 2 cut(s) 28, 466
Eco91I GGTNACC 1 cut(s) 50
EcoO65I GGTNACC 1 cut(s) 50
EcoRII CCWGG 4 cut(s) 246, 299, 679, 853
EcoT14I CCWWGG 3 cut(s) 469, 561, 810
EcoT22I ATGCAT 1 cut(s) 737
EcoT38I GRGCYC 1 cut(s) 307
ErhI CCWWGG 3 cut(s) 469, 561, 810
Esp3I CGTCTC 1 cut(s) 7
FaeI CATG 8 cut(s) 194, 410, 583, 658, 750, 814, 822, 980
FaqI GGGAC 1 cut(s) 152
FatI CATG 8 cut(s) 190, 406, 579, 654, 746, 810, 818, 976
FbaI TGATCA 1 cut(s) 825
Fnu4HI GCNGC 2 cut(s) 186, 771
FokI GGATG 4 cut(s) 69, 269, 461, 659
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 2 cut(s) 186, 771
FspBI CTAG 1 cut(s) 492
GluI GCNGC 2 cut(s) 186, 771
GsaI CCCAGC 2 cut(s) 277, 913
HaeIII GGCC 4 cut(s) 19, 367, 397, 1025
HapII CCGG 1 cut(s) 26
Hin1II CATG 8 cut(s) 194, 410, 583, 658, 750, 814, 822, 980
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 4 cut(s) 151, 608, 618, 743
HpaII CCGG 1 cut(s) 26
HphI GGTGA 7 cut(s) 44, 58, 134, 370, 428, 965, 996
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 5 cut(s) 156, 484, 607, 715, 1036
Hpy188III TCNNGA 4 cut(s) 407, 446, 492, 765
Hpy8I GTNNAC 1 cut(s) 391
HpyCH4III ACNGT 5 cut(s) 56, 122, 265, 797, 1045
HpyCH4IV ACGT 1 cut(s) 983
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 329, 590, 864
HpyF3I CTNAG 4 cut(s) 44, 483, 547, 763
HpySE526I ACGT 1 cut(s) 983
Hsp92II CATG 8 cut(s) 194, 410, 583, 658, 750, 814, 822, 980
Ksp22I TGATCA 1 cut(s) 825
Kzo9I GATC 2 cut(s) 825, 913
LguI GCTCTTC 1 cut(s) 223
LmnI GCTCC 6 cut(s) 227, 310, 548, 656, 767, 847
Lsp1109I GCAGC 1 cut(s) 757
LweI GCATC 4 cut(s) 173, 412, 424, 1040
MaeI CTAG 1 cut(s) 492
MaeII ACGT 1 cut(s) 983
MaeIII GTNAC 3 cut(s) 50, 64, 691
MalI GATC 2 cut(s) 827, 915
MboI GATC 2 cut(s) 825, 913
MboII GAAGA 4 cut(s) 210, 373, 470, 515
MfeI CAATTG 1 cut(s) 222
MhlI GDGCHC 2 cut(s) 307, 792
MluCI AATT 4 cut(s) 222, 783, 805, 837
Mph1103I ATGCAT 1 cut(s) 737
MseI TTAA 2 cut(s) 267, 725
MslI CAYNNNNRTG 1 cut(s) 1046
MspA1I CMGCKG 1 cut(s) 905
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 4 cut(s) 248, 301, 681, 855
MunI CAATTG 1 cut(s) 222
MvaI CCWGG 4 cut(s) 248, 301, 681, 855
MwoI GCNNNNNNNGC 4 cut(s) 206, 329, 590, 864
NcoI CCATGG 1 cut(s) 810
NdeII GATC 2 cut(s) 825, 913
NlaIII CATG 8 cut(s) 194, 410, 583, 658, 750, 814, 822, 980
NlaIV GGNNCC 5 cut(s) 30, 112, 306, 544, 652
NmuCI GTSAC 2 cut(s) 50, 64
NsiI ATGCAT 1 cut(s) 737
NspI RCATGY 1 cut(s) 822
OliI CACNNNNGTG 1 cut(s) 1046
PagI TCATGA 1 cut(s) 406
PceI AGGCCT 1 cut(s) 367
PciI ACATGT 1 cut(s) 818
PciSI GCTCTTC 1 cut(s) 223
PfeI GAWTC 4 cut(s) 151, 608, 618, 743
PflMI CCANNNNNTGG 1 cut(s) 660
PkrI GCNGC 2 cut(s) 187, 772
PscI ACATGT 1 cut(s) 818
Psp6I CCWGG 4 cut(s) 246, 299, 679, 853
PspEI GGTNACC 1 cut(s) 50
PspFI CCCAGC 2 cut(s) 273, 909
PspGI CCWGG 4 cut(s) 246, 299, 679, 853
PspN4I GGNNCC 5 cut(s) 30, 112, 306, 544, 652
PspPI GGNCC 3 cut(s) 28, 395, 466
PstI CTGCAG 2 cut(s) 150, 775
PstNI CAGNNNCTG 2 cut(s) 38, 770
PvuII CAGCTG 1 cut(s) 905
RsaI GTAC 1 cut(s) 817
RsaNI GTAC 1 cut(s) 816
RseI CAYNNNNRTG 1 cut(s) 1046
SapI GCTCTTC 1 cut(s) 223
SaqAI TTAA 2 cut(s) 267, 725
SatI GCNGC 2 cut(s) 186, 771
Sau3AI GATC 2 cut(s) 825, 913
Sau96I GGNCC 3 cut(s) 28, 395, 466
ScrFI CCNGG 4 cut(s) 248, 301, 681, 855
SduI GDGCHC 2 cut(s) 307, 792
SfaNI GCATC 4 cut(s) 173, 412, 424, 1040
SfcI CTRYAG 3 cut(s) 146, 771, 793
SinI GGWCC 2 cut(s) 28, 466
SmiMI CAYNNNNRTG 1 cut(s) 1046
Sse9I AATT 4 cut(s) 222, 783, 805, 837
SseBI AGGCCT 1 cut(s) 367
SsiI CCGC 4 cut(s) 23, 114, 130, 185
SspI AATATT 2 cut(s) 894, 963
SspMI CTAG 1 cut(s) 492
StuI AGGCCT 1 cut(s) 367
StyD4I CCNGG 4 cut(s) 246, 299, 679, 853
StyI CCWWGG 3 cut(s) 469, 561, 810
TaaI ACNGT 5 cut(s) 56, 122, 265, 797, 1045
TaiI ACGT 1 cut(s) 986
TaqI TCGA 1 cut(s) 877
TasI AATT 4 cut(s) 222, 783, 805, 837
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 4 cut(s) 151, 608, 618, 743
Tru1I TTAA 2 cut(s) 267, 725
Tru9I TTAA 2 cut(s) 267, 725
TscAI CASTG 4 cut(s) 39, 112, 150, 1050
TseFI GTSAC 2 cut(s) 50, 64
TseI GCWGC 1 cut(s) 770
Tsp45I GTSAC 2 cut(s) 50, 64
TspDTI ATGAA 5 cut(s) 17, 516, 698, 735, 792
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 4 cut(s) 39, 112, 150, 1050
Van91I CCANNNNNTGG 1 cut(s) 660
VpaK11BI GGWCC 2 cut(s) 28, 466
XbaI TCTAGA 1 cut(s) 491
XceI RCATGY 1 cut(s) 822
XcmI CCANNNNNNNNNTGG 1 cut(s) 254
XspI CTAG 1 cut(s) 492
Zsp2I ATGCAT 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.