Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000943

Physical Location & Seq

Genomic Coordinates Forward (+)

29423740 .. 29431151

Gene Structure 7412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G012510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGAACAAACTGAGACGGTCACCTCCGGACCCAGTGGCTGTGCTCAGAGGTCACCGTGCCTCTGTTTCCGTAGACGATGAGTTGCGGATTTGGGTCACTCTGCAAAATCGGACGAGGGTAAGTAGCATTTTGGTGCATAATGTGGCACATGGGGTTGCTTCTGTTGCTTGTACGGTAGGGATGGAACTGTTAAAAAAGTGCTGGAATATTGGAGATAGGAGGGCTCCCTCTGTGATGATTGAGACAAGTGCTTACCACTTCTGTAAGCTTTCGTTAGTGAAGAGACCTCATTCTTTATTTCTTGAAACAGAAAATACTAAAGTTGGAGGATCTAAATACATTGCTATAGCAGGAGAGCAGTCTTCTGAGGTTGAGATATGGGATCTTAATACTGCAGAAAGGTGTATGCGACTACCTCAAAGCTGTTCTGCTGGCTCCTCAGCAATTTCTACCAAGGAAAGAGGAATGTGCATGGCAGTTCAAGCATTTTTACCATCGGAATCACAGGGATTCCTAAATGTCCTGGCTGGGAATGTTCTTCTATTCTCATTAGCAATCGATTATAAGGATGGCTCCATGCTTTGGTGGGATATTAGAAATCCTGATGTTCCAGTTACATCTGTCAACCTATGCATTGATGATTCATGCAATATTGGTAGTATCTCAGGAGATGCAGATGAAAAAATTGTGCTCTACAGTTTGGATAATTCCATGAATATAACACTTTCATACGTAAATCTGATGTCATTCTTTCTATTTCCTATTGTGTTTTCTCCAACCTACGGTACATGTGTGATAAAAAAAGAAACTAATTTGGAGCGACCTAGCATATCAAGCACCTCTATTCAACCTGAAGGTAAAATATTTGCAACAGCTGGCTGGGATCATAGTCACCTTTGTTGCATTAAGGCCATATTATCTCCTATTTTCTGCATTCTCATGTCTCTTTTTCCTTTTTACCTCTTGATGGCAGAGTATAACTATCACAAAGGAAATGCTTTGGCAATATTGAAGTATCACCATGCAACGTGTAATGCAGTCTCTTATTCAACAGATTGTAAGCTAATGGCCTCTGCATCAGAGGACACAGTGGTTGGCCGGACTGTGGAAACTCTATACTCCTCAAACCTGAGAGTGATATTAGAATATATCACATTGAGAATCAGTAAATGTTTCTGTTTCTATATATATATATATATATATATATATATTAACCAATATGTCAAATATTGTTGGAGCCTATTCTGCATCCATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006282 GO:0006810 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0009555 GO:0009636 GO:0009663 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010162 GO:0010431 GO:0010496 GO:0010497 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031461 GO:0031570 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034330 GO:0035670 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045216 GO:0045786 GO:0045787 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048609 GO:0048700 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0071156 GO:0071158 GO:0071695 GO:0071840 GO:0072718 GO:0080008 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090567 GO:0097327 GO:0097439 GO:0099402 GO:1902494 GO:1990234 GO:2000026 GO:2000280 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

419

Amino Acids

46.98

Weight (kDa)

7.47

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29860
fragaria_vesca	FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120
malus_domestica	MD08G1017100.v1.1 MD15G1016100.v1.1 MD15G1017900.v1.1 MD15G1018000.v1.1
prunus_persica	Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1
pyrus_communis	pycom08g01490 pycom15g01390
rosa_chinensis	RchiOBHm_Chr6g0272131 RchiOBHm_Chr6g0302231
rosa_laevigata	RLG00000011183 RLG00000013699
rosa_multiflora	Rmu_sc0013301.1_g000007 Rmu_sc0027601.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165940 Rroxscaffold_7G00196580
rosa_rugosa	Rorug06G0065900 Rorug06G0313400.1
rosa_samantha	Rh6AG183100 Rh6BG184000 Rh6BG476300 Rh6CG184400 Rh6DG176100 Rh6DG425800
rosa_wichuraiana	Rw4G012510 Rw6G015760 Rw6G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	564
AccB7I	CCANNNNNTGG	1 cut(s)	582
AccI	GTMKAC	1 cut(s)	72
AccIII	TCCGGA	1 cut(s)	25
AciI	CCGC	1 cut(s)	85
AclWI	GGATC	3 cut(s)	337, 390, 891
AcoI	YGGCCR	1 cut(s)	1096
AcuI	CTGAAG	1 cut(s)	873
AfaI	GTAC	2 cut(s)	172, 787
AfiI	CCNNNNNNNGG	4 cut(s)	582, 782, 967, 1105
AflIII	ACRYGT	2 cut(s)	788, 1028
AgsI	TTSAA	5 cut(s)	305, 482, 848, 1012, 1050
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	4 cut(s)	268, 423, 875, 1063
AluI	AGCT	4 cut(s)	268, 423, 875, 1063
Alw21I	GWGCWC	2 cut(s)	45, 693
Alw26I	GTCTC	5 cut(s)	7, 236, 277, 948, 1045
AlwI	GGATC	3 cut(s)	337, 390, 891
AlwNI	CAGNNNCTG	1 cut(s)	38
Aor13HI	TCCGGA	1 cut(s)	25
AoxI	GGCC	3 cut(s)	909, 1068, 1096
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	4 cut(s)	12, 44, 884, 1010
AvaII	GGWCC	1 cut(s)	28
BaeI	ACNNNNGTAYC	2 cut(s)	777, 810
BanII	GRGCYC	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	2 cut(s)	45, 693
BbvCI	CCTCAGC	1 cut(s)	439
BccI	CCATC	4 cut(s)	175, 502, 563, 961
BciT130I	CCWGG	1 cut(s)	524
BcoDI	GTCTC	5 cut(s)	7, 236, 277, 948, 1045
BfaI	CTAG	1 cut(s)	825
BfmI	CTRYAG	3 cut(s)	345, 393, 694
Bme1390I	CCNGG	1 cut(s)	524
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	5 cut(s)	30, 225, 436, 574, 1238
BmrFI	CCNGG	1 cut(s)	524
BmrI	ACTGGG	1 cut(s)	26
BmsI	GCATC	2 cut(s)	661, 1085
BmuI	ACTGGG	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	439
Bsa29I	ATCGAT	1 cut(s)	558
BsaAI	YACGTR	1 cut(s)	733
BsaI	GGTCTC	1 cut(s)	277
BsaJI	CCNNGG	1 cut(s)	453
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	4 cut(s)	582, 782, 967, 1105
Bse1I	ACTGG	2 cut(s)	32, 611
Bse3DI	GCAATG	1 cut(s)	339
BseAI	TCCGGA	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	524
BseCI	ATCGAT	1 cut(s)	558
BseDI	CCNNGG	1 cut(s)	453
BseGI	GGATG	3 cut(s)	186, 574, 1248
BseLI	CCNNNNNNNGG	4 cut(s)	582, 782, 967, 1105
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	5 cut(s)	58, 357, 453, 678, 1121
BseNI	ACTGG	2 cut(s)	32, 611
BseRI	GAGGAG	2 cut(s)	427, 1111
BseYI	CCCAGC	2 cut(s)	527, 879
BshFI	GGCC	3 cut(s)	911, 1070, 1098
BshVI	ATCGAT	1 cut(s)	558
BsiHKAI	GWGCWC	2 cut(s)	45, 693
BsiSI	CCGG	2 cut(s)	26, 1099
BslI	CCNNNNNNNGG	4 cut(s)	582, 782, 967, 1105
BsmAI	GTCTC	5 cut(s)	7, 236, 277, 948, 1045
BsmBI	CGTCTC	1 cut(s)	7
BsmI	GAATGC	1 cut(s)	933
BsnI	GGCC	3 cut(s)	911, 1070, 1098
Bso31I	GGTCTC	1 cut(s)	277
Bsp1286I	GDGCHC	3 cut(s)	45, 226, 693
Bsp13I	TCCGGA	1 cut(s)	25
Bsp143I	GATC	3 cut(s)	329, 382, 883
BspACI	CCGC	1 cut(s)	85
BspANI	GGCC	3 cut(s)	911, 1070, 1098
BspCNI	CTCAG	5 cut(s)	57, 358, 452, 677, 1122
BspDI	ATCGAT	1 cut(s)	558
BspEI	TCCGGA	1 cut(s)	25
BspLI	GGNNCC	5 cut(s)	30, 225, 436, 574, 1238
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	3 cut(s)	337, 390, 891
BspTNI	GGTCTC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	32, 611
BssECI	CCNNGG	1 cut(s)	453
BssMI	GATC	3 cut(s)	329, 382, 883
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	8 cut(s)	18, 56, 175, 189, 698, 785, 1090, 1105
Bst6I	CTCTTC	1 cut(s)	275
BstBAI	YACGTR	1 cut(s)	733
BstC8I	GCNNGC	2 cut(s)	433, 877
BstDEI	CTNAG	6 cut(s)	11, 44, 366, 439, 664, 1130
BstEII	GGTNACC	2 cut(s)	18, 50
BstF5I	GGATG	3 cut(s)	186, 574, 1248
BstKTI	GATC	3 cut(s)	332, 385, 886
BstMAI	GTCTC	5 cut(s)	7, 236, 277, 948, 1045
BstMBI	GATC	3 cut(s)	329, 382, 883
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 482, 834, 1245
BstNI	CCWGG	1 cut(s)	524
BstNSI	RCATGY	1 cut(s)	792
BstPI	GGTNACC	2 cut(s)	18, 50
BstSCI	CCNGG	1 cut(s)	522
BstSFI	CTRYAG	3 cut(s)	345, 393, 694
BstSNI	TACGTA	1 cut(s)	733
BstV2I	GAAGAC	1 cut(s)	354
BstX2I	RGATCY	2 cut(s)	329, 382
BstYI	RGATCY	2 cut(s)	329, 382
Bsu15I	ATCGAT	1 cut(s)	558
BsuRI	GGCC	3 cut(s)	911, 1070, 1098
BsuTUI	ATCGAT	1 cut(s)	558
BtsCI	GGATG	3 cut(s)	186, 574, 1248
BtsIMutI	CAGTG	2 cut(s)	39, 1095
Cac8I	GCNNGC	2 cut(s)	433, 877
CaiI	CAGNNNCTG	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	28
ClaI	ATCGAT	1 cut(s)	558
Csp6I	GTAC	2 cut(s)	171, 786
CviAII	CATG	8 cut(s)	149, 472, 577, 645, 712, 789, 940, 1022
CviQI	GTAC	2 cut(s)	171, 786
DdeI	CTNAG	6 cut(s)	11, 44, 366, 439, 664, 1130
DpnI	GATC	3 cut(s)	331, 384, 885
DpnII	GATC	3 cut(s)	329, 382, 883
EaeI	YGGCCR	1 cut(s)	1096
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Eco105I	TACGTA	1 cut(s)	733
Eco130I	CCWWGG	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	873
Eco91I	GGTNACC	2 cut(s)	18, 50
EcoO65I	GGTNACC	2 cut(s)	18, 50
EcoRII	CCWGG	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	453
EcoT22I	ATGCAT	1 cut(s)	635
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	453
Esp3I	CGTCTC	1 cut(s)	7
FaeI	CATG	8 cut(s)	152, 475, 580, 648, 715, 792, 943, 1025
FatI	CATG	8 cut(s)	148, 471, 576, 644, 711, 788, 939, 1021
FblI	GTMKAC	1 cut(s)	72
FokI	GGATG	3 cut(s)	193, 581, 1235
FriOI	GRGCYC	1 cut(s)	226
FspBI	CTAG	1 cut(s)	825
GsaI	CCCAGC	2 cut(s)	531, 883
HaeIII	GGCC	3 cut(s)	911, 1070, 1098
HapII	CCGG	2 cut(s)	26, 1099
Hin1II	CATG	8 cut(s)	152, 475, 580, 648, 715, 792, 943, 1025
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	4 cut(s)	500, 510, 641, 1161
HpaII	CCGG	2 cut(s)	26, 1099
HphI	GGTGA	4 cut(s)	12, 44, 884, 1010
Hpy166II	GTNNAC	2 cut(s)	73, 625
Hpy188I	TCNGA	6 cut(s)	47, 111, 367, 499, 741, 1081
Hpy188III	TCNNGA	5 cut(s)	26, 302, 602, 666, 964
Hpy8I	GTNNAC	2 cut(s)	73, 625
HpyAV	CCTTC	1 cut(s)	848
HpyCH4III	ACNGT	8 cut(s)	18, 56, 175, 189, 698, 785, 1090, 1105
HpyCH4IV	ACGT	2 cut(s)	732, 1028
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 482, 834, 1245
HpyF3I	CTNAG	6 cut(s)	11, 44, 366, 439, 664, 1130
HpySE526I	ACGT	2 cut(s)	732, 1028
Hsp92II	CATG	8 cut(s)	152, 475, 580, 648, 715, 792, 943, 1025
Kpn2I	TCCGGA	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	329, 382, 883
LmnI	GCTCC	5 cut(s)	229, 440, 578, 817, 1236
LweI	GCATC	2 cut(s)	661, 1085
MaeI	CTAG	1 cut(s)	825
MaeII	ACGT	2 cut(s)	732, 1028
MaeIII	GTNAC	5 cut(s)	18, 50, 94, 613, 890
MalI	GATC	3 cut(s)	331, 384, 885
MboI	GATC	3 cut(s)	329, 382, 883
MboII	GAAGA	3 cut(s)	292, 354, 530
MflI	RGATCY	2 cut(s)	329, 382
MhlI	GDGCHC	3 cut(s)	45, 226, 693
MluCI	AATT	4 cut(s)	444, 684, 706, 811
MmeI	TCCRAC	3 cut(s)	304, 800, 1214
Mph1103I	ATGCAT	1 cut(s)	635
MroI	TCCGGA	1 cut(s)	25
MseI	TTAA	4 cut(s)	191, 387, 906, 1212
MslI	CAYNNNNRTG	2 cut(s)	131, 938
MspA1I	CMGCKG	1 cut(s)	875
MspI	CCGG	2 cut(s)	26, 1099
MspR9I	CCNGG	1 cut(s)	524
Mva1269I	GAATGC	1 cut(s)	933
MvaI	CCWGG	1 cut(s)	524
MwoI	GCNNNNNNNGC	4 cut(s)	164, 482, 834, 1245
NdeII	GATC	3 cut(s)	329, 382, 883
NlaIII	CATG	8 cut(s)	152, 475, 580, 648, 715, 792, 943, 1025
NlaIV	GGNNCC	5 cut(s)	30, 225, 436, 574, 1238
NmuCI	GTSAC	4 cut(s)	18, 50, 94, 890
NsiI	ATGCAT	1 cut(s)	635
NspI	RCATGY	1 cut(s)	792
PciI	ACATGT	1 cut(s)	788
PctI	GAATGC	1 cut(s)	933
PfeI	GAWTC	4 cut(s)	500, 510, 641, 1161
PflMI	CCANNNNNTGG	1 cut(s)	582
Ppu21I	YACGTR	1 cut(s)	733
PscI	ACATGT	1 cut(s)	788
PsiI	TTATAA	1 cut(s)	564
Psp6I	CCWGG	1 cut(s)	522
PspEI	GGTNACC	2 cut(s)	18, 50
PspFI	CCCAGC	2 cut(s)	527, 879
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	5 cut(s)	30, 225, 436, 574, 1238
PspPI	GGNCC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	397
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	2 cut(s)	329, 382
PvuII	CAGCTG	1 cut(s)	875
RsaI	GTAC	2 cut(s)	172, 787
RsaNI	GTAC	2 cut(s)	171, 786
RseI	CAYNNNNRTG	2 cut(s)	131, 938
SaqAI	TTAA	4 cut(s)	191, 387, 906, 1212
Sau3AI	GATC	3 cut(s)	329, 382, 883
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	524
SduI	GDGCHC	3 cut(s)	45, 226, 693
SfaNI	GCATC	2 cut(s)	661, 1085
SfcI	CTRYAG	3 cut(s)	345, 393, 694
SinI	GGWCC	1 cut(s)	28
SmiMI	CAYNNNNRTG	2 cut(s)	131, 938
SnaBI	TACGTA	1 cut(s)	733
Sse9I	AATT	4 cut(s)	444, 684, 706, 811
SsiI	CCGC	1 cut(s)	85
SspI	AATATT	5 cut(s)	208, 652, 864, 1008, 1229
SspMI	CTAG	1 cut(s)	825
StyD4I	CCNGG	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	8 cut(s)	18, 56, 175, 189, 698, 785, 1090, 1105
TaiI	ACGT	2 cut(s)	735, 1031
TaqI	TCGA	1 cut(s)	558
TasI	AATT	4 cut(s)	444, 684, 706, 811
TfiI	GAWTC	4 cut(s)	500, 510, 641, 1161
Tru1I	TTAA	4 cut(s)	191, 387, 906, 1212
Tru9I	TTAA	4 cut(s)	191, 387, 906, 1212
TscAI	CASTG	2 cut(s)	39, 1095
TseFI	GTSAC	4 cut(s)	18, 50, 94, 890
Tsp45I	GTSAC	4 cut(s)	18, 50, 94, 890
TspDTI	ATGAA	5 cut(s)	17, 633, 693, 717, 728
TspGWI	ACGGA	1 cut(s)	58
TspRI	CASTG	2 cut(s)	39, 1095
Van91I	CCANNNNNTGG	1 cut(s)	582
VpaK11BI	GGWCC	1 cut(s)	28
XceI	RCATGY	1 cut(s)	792
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	1 cut(s)	825
Zsp2I	ATGCAT	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.