Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013301.1

Orthogroup ID

OG0000943

Physical Location & Seq

Genomic Coordinates Forward (+)

32577 .. 36180

Gene Structure 3604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013301.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

atgaacaaacagagacggccaccgccagacccagtggctgtgctgagaggtcaccgtgcctctgtcaccgacctttgtttccatccatctcaacctctcttatacactggttccacagacggtgagttgcggatttgggacacactgcagaatcggacgatagtatcagcaggggtgcataatgcggcacatggggttgcttctgttgcttgtagctcttcaattggagctgacaaagttatcagccagggtagggatggaactgttaagtgctgggatattggagatggaggtctatccagggctccctctgttatgattgcaacaaatgcttaccacttctgtaagctttcgttggtaaagagacctcattcttgttctacacaagttgacgggccaaagcatcatgacggaggtgagagggagactactgatgcagatactctggatgatagtgaagaaaaggtccaagggaatctgtctgagctgtctagaaccaatgaagaaaatactgaagttggaggatctaaatacattgctatagcaggagagcagtcttctgaggttgagatttgggatcttaatactgcagaaaggtgtatgcgactacctcaaagcagttctgctggctcctcagctatttctaccaaggaaagaggaatgtgcatggcagttcaagcatttttaccatcagaatcacagggattcctaaatgtcgtggctggttatgaggatggctccatgctttggtgggatattagaaatccaggtgttccagttacatctgtcaagtttcattcagagccagttttaagcctatgcattgatgattcatgcaatggtggtatctcaggagctgcagatgaaaaaattgtgctctgtagtttggataattccatgggtacatgtgtgataaaaaaagaaattgatttggagcgacctggcatatcaagcacctctattcgacctgatggtaaaatatttgcaacagctggctgggatcacagagtgagagtatataactatcgcaaaggaaatgctttggcaatattgaagtatcaccatgcaacgtgtaatgcaatctcttattcaccagattgtaagctcatggcctctgcatcagaggacacagtggtggcactttggaaactctatactcctcaaacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006282 GO:0006810 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0009555 GO:0009636 GO:0009663 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010162 GO:0010431 GO:0010496 GO:0010497 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031461 GO:0031570 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034330 GO:0035670 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045216 GO:0045786 GO:0045787 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048609 GO:0048700 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0071156 GO:0071158 GO:0071695 GO:0071840 GO:0072718 GO:0080008 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090567 GO:0097327 GO:0097439 GO:0099402 GO:1902494 GO:1990234 GO:2000026 GO:2000280 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

389

Amino Acids

42.02

Weight (kDa)

5.75

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29860
fragaria_vesca	FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120
malus_domestica	MD08G1017100.v1.1 MD15G1016100.v1.1 MD15G1017900.v1.1 MD15G1018000.v1.1
prunus_persica	Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1
pyrus_communis	pycom08g01490 pycom15g01390
rosa_chinensis	RchiOBHm_Chr6g0272131 RchiOBHm_Chr6g0302231
rosa_laevigata	RLG00000011183 RLG00000013699
rosa_multiflora	Rmu_sc0013301.1_g000007 Rmu_sc0027601.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165940 Rroxscaffold_7G00196580
rosa_rugosa	Rorug06G0065900 Rorug06G0313400.1
rosa_samantha	Rh6AG183100 Rh6BG184000 Rh6BG476300 Rh6CG184400 Rh6DG176100 Rh6DG425800
rosa_wichuraiana	Rw4G012510 Rw6G015760 Rw6G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	747
AciI	CCGC	3 cut(s)	23, 130, 185
AclWI	GGATC	3 cut(s)	532, 585, 1008
AcoI	YGGCCR	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	534
AdeI	CACNNNGTG	1 cut(s)	1009
AfaI	GTAC	1 cut(s)	904
AfiI	CCNNNNNNNGG	2 cut(s)	253, 747
AflIII	ACRYGT	2 cut(s)	905, 1070
AgsI	TTSAA	3 cut(s)	222, 677, 1054
AjnI	CCWGG	4 cut(s)	246, 299, 766, 940
AleI	CACNNNNGTG	1 cut(s)	1133
AluBI	AGCT	8 cut(s)	216, 230, 349, 487, 638, 857, 992, 1105
AluI	AGCT	8 cut(s)	216, 230, 349, 487, 638, 857, 992, 1105
Alw21I	GWGCWC	1 cut(s)	879
Alw26I	GTCTC	3 cut(s)	7, 358, 419
AlwI	GGATC	3 cut(s)	532, 585, 1008
AlwNI	CAGNNNCTG	2 cut(s)	38, 857
AoxI	GGCC	3 cut(s)	17, 395, 1110
ApeKI	GCWGC	1 cut(s)	857
AspS9I	GGNCC	2 cut(s)	395, 466
AsuHPI	GGTGA	6 cut(s)	44, 58, 134, 428, 1052, 1083
AvaII	GGWCC	1 cut(s)	466
BaeI	ACNNNNGTAYC	4 cut(s)	147, 180, 894, 927
BanII	GRGCYC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	549
Bbv12I	GWGCWC	1 cut(s)	879
BbvCI	CCTCAGC	1 cut(s)	634
BbvI	GCAGC	1 cut(s)	844
BccI	CCATC	7 cut(s)	90, 94, 251, 281, 697, 728, 965
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	4 cut(s)	248, 301, 768, 942
BcoDI	GTCTC	3 cut(s)	7, 358, 419
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	5 cut(s)	146, 540, 588, 858, 880
BisI	GCNGC	2 cut(s)	186, 858
BlsI	GCNGC	2 cut(s)	187, 859
Bme1390I	CCNGG	4 cut(s)	248, 301, 768, 942
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	2 cut(s)	395, 466
BmiI	GGNNCC	4 cut(s)	112, 306, 631, 739
BmrFI	CCNGG	4 cut(s)	248, 301, 768, 942
BmrI	ACTGGG	1 cut(s)	26
BmsI	GCATC	3 cut(s)	412, 424, 1127
BmuI	ACTGGG	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	549
BplI	GAGNNNNNCTC	2 cut(s)	722, 754
Bpu10I	CCTNAGC	1 cut(s)	634
BsaI	GGTCTC	1 cut(s)	358
BsaJI	CCNNGG	5 cut(s)	247, 300, 469, 648, 897
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 747
Bse1I	ACTGG	4 cut(s)	32, 112, 776, 806
Bse3DI	GCAATG	2 cut(s)	534, 844
BseBI	CCWGG	4 cut(s)	248, 301, 768, 942
BseDI	CCNNGG	5 cut(s)	247, 300, 469, 648, 897
BseGI	GGATG	4 cut(s)	82, 262, 454, 739
BseLI	CCNNNNNNNGG	2 cut(s)	253, 747
BseMI	GCAATG	2 cut(s)	534, 844
BseMII	CTCAG	5 cut(s)	35, 474, 552, 648, 864
BseNI	ACTGG	4 cut(s)	32, 112, 776, 806
BseRI	GAGGAG	2 cut(s)	622, 1149
BseXI	GCAGC	1 cut(s)	844
BseYI	CCCAGC	2 cut(s)	273, 996
BshFI	GGCC	3 cut(s)	19, 397, 1112
BsiHKAI	GWGCWC	1 cut(s)	879
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	253, 747
BsmAI	GTCTC	3 cut(s)	7, 358, 419
BsmBI	CGTCTC	1 cut(s)	7
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	3 cut(s)	19, 397, 1112
Bso31I	GGTCTC	1 cut(s)	358
Bsp1286I	GDGCHC	2 cut(s)	307, 879
Bsp143I	GATC	3 cut(s)	524, 577, 1000
Bsp19I	CCATGG	1 cut(s)	897
BspACI	CCGC	3 cut(s)	23, 130, 185
BspANI	GGCC	3 cut(s)	19, 397, 1112
BspCNI	CTCAG	5 cut(s)	36, 475, 553, 647, 863
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	4 cut(s)	112, 306, 631, 739
BspMAI	CTGCAG	3 cut(s)	150, 592, 862
BspPI	GGATC	3 cut(s)	532, 585, 1008
BspQI	GCTCTTC	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	358
BsrDI	GCAATG	2 cut(s)	534, 844
BsrI	ACTGG	4 cut(s)	32, 112, 776, 806
BssECI	CCNNGG	5 cut(s)	247, 300, 469, 648, 897
BssMI	GATC	3 cut(s)	524, 577, 1000
BssT1I	CCWWGG	3 cut(s)	469, 648, 897
Bst2UI	CCWGG	4 cut(s)	248, 301, 768, 942
Bst4CI	ACNGT	4 cut(s)	56, 122, 265, 1132
Bst6I	CTCTTC	1 cut(s)	223
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	628, 994
BstDEI	CTNAG	5 cut(s)	44, 483, 561, 634, 850
BstDSI	CCRYGG	1 cut(s)	897
BstEII	GGTNACC	1 cut(s)	50
BstF5I	GGATG	4 cut(s)	82, 262, 454, 739
BstKTI	GATC	3 cut(s)	527, 580, 1003
BstMAI	GTCTC	3 cut(s)	7, 358, 419
BstMBI	GATC	3 cut(s)	524, 577, 1000
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 329, 677, 951
BstNI	CCWGG	4 cut(s)	248, 301, 768, 942
BstNSI	RCATGY	1 cut(s)	909
BstPI	GGTNACC	1 cut(s)	50
BstSCI	CCNGG	4 cut(s)	246, 299, 766, 940
BstSFI	CTRYAG	5 cut(s)	146, 540, 588, 858, 880
BstV1I	GCAGC	1 cut(s)	844
BstV2I	GAAGAC	1 cut(s)	549
BstX2I	RGATCY	2 cut(s)	524, 577
BstYI	RGATCY	2 cut(s)	524, 577
BsuRI	GGCC	3 cut(s)	19, 397, 1112
BtgI	CCRYGG	1 cut(s)	897
BtsCI	GGATG	4 cut(s)	82, 262, 454, 739
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	4 cut(s)	39, 105, 143, 1137
Cac8I	GCNNGC	2 cut(s)	628, 994
CaiI	CAGNNNCTG	2 cut(s)	38, 857
CciI	TCATGA	1 cut(s)	406
Cfr13I	GGNCC	2 cut(s)	395, 466
Csp6I	GTAC	1 cut(s)	903
CviAII	CATG	9 cut(s)	191, 407, 667, 742, 834, 898, 906, 1064, 1108
CviQI	GTAC	1 cut(s)	903
DdeI	CTNAG	5 cut(s)	44, 483, 561, 634, 850
DpnI	GATC	3 cut(s)	526, 579, 1002
DpnII	GATC	3 cut(s)	524, 577, 1000
DraIII	CACNNNGTG	1 cut(s)	1009
EaeI	YGGCCR	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
Eco130I	CCWWGG	3 cut(s)	469, 648, 897
Eco24I	GRGCYC	1 cut(s)	307
Eco31I	GGTCTC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	534
Eco91I	GGTNACC	1 cut(s)	50
EcoO65I	GGTNACC	1 cut(s)	50
EcoRII	CCWGG	4 cut(s)	246, 299, 766, 940
EcoT14I	CCWWGG	3 cut(s)	469, 648, 897
EcoT22I	ATGCAT	1 cut(s)	824
EcoT38I	GRGCYC	1 cut(s)	307
ErhI	CCWWGG	3 cut(s)	469, 648, 897
Esp3I	CGTCTC	1 cut(s)	7
FaeI	CATG	9 cut(s)	194, 410, 670, 745, 837, 901, 909, 1067, 1111
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	9 cut(s)	190, 406, 666, 741, 833, 897, 905, 1063, 1107
Fnu4HI	GCNGC	2 cut(s)	186, 858
FokI	GGATG	4 cut(s)	69, 269, 461, 746
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	2 cut(s)	186, 858
FspBI	CTAG	1 cut(s)	492
GluI	GCNGC	2 cut(s)	186, 858
GsaI	CCCAGC	2 cut(s)	277, 1000
HaeIII	GGCC	3 cut(s)	19, 397, 1112
Hin1II	CATG	9 cut(s)	194, 410, 670, 745, 837, 901, 909, 1067, 1111
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	5 cut(s)	151, 475, 695, 705, 830
HphI	GGTGA	6 cut(s)	44, 58, 134, 428, 1052, 1083
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	6 cut(s)	156, 484, 562, 694, 802, 1123
Hpy188III	TCNNGA	4 cut(s)	407, 446, 492, 852
Hpy8I	GTNNAC	1 cut(s)	391
HpyCH4III	ACNGT	4 cut(s)	56, 122, 265, 1132
HpyCH4IV	ACGT	1 cut(s)	1070
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 329, 677, 951
HpyF3I	CTNAG	5 cut(s)	44, 483, 561, 634, 850
HpySE526I	ACGT	1 cut(s)	1070
Hsp92II	CATG	9 cut(s)	194, 410, 670, 745, 837, 901, 909, 1067, 1111
Kzo9I	GATC	3 cut(s)	524, 577, 1000
LguI	GCTCTTC	1 cut(s)	223
LmnI	GCTCC	6 cut(s)	227, 310, 635, 743, 854, 934
Lsp1109I	GCAGC	1 cut(s)	844
LweI	GCATC	3 cut(s)	412, 424, 1127
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	1 cut(s)	1070
MaeIII	GTNAC	3 cut(s)	50, 64, 778
MalI	GATC	3 cut(s)	526, 579, 1002
MboI	GATC	3 cut(s)	524, 577, 1000
MboII	GAAGA	4 cut(s)	210, 470, 515, 549
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	2 cut(s)	524, 577
MhlI	GDGCHC	2 cut(s)	307, 879
MluCI	AATT	4 cut(s)	222, 870, 892, 924
MmeI	TCCRAC	1 cut(s)	499
Mph1103I	ATGCAT	1 cut(s)	824
MseI	TTAA	3 cut(s)	267, 582, 812
MslI	CAYNNNNRTG	1 cut(s)	1133
MspA1I	CMGCKG	1 cut(s)	992
MspR9I	CCNGG	4 cut(s)	248, 301, 768, 942
MunI	CAATTG	1 cut(s)	222
MvaI	CCWGG	4 cut(s)	248, 301, 768, 942
MwoI	GCNNNNNNNGC	4 cut(s)	206, 329, 677, 951
NcoI	CCATGG	1 cut(s)	897
NdeII	GATC	3 cut(s)	524, 577, 1000
NlaIII	CATG	9 cut(s)	194, 410, 670, 745, 837, 901, 909, 1067, 1111
NlaIV	GGNNCC	4 cut(s)	112, 306, 631, 739
NmuCI	GTSAC	2 cut(s)	50, 64
NsiI	ATGCAT	1 cut(s)	824
NspI	RCATGY	1 cut(s)	909
OliI	CACNNNNGTG	1 cut(s)	1133
PagI	TCATGA	1 cut(s)	406
PciI	ACATGT	1 cut(s)	905
PciSI	GCTCTTC	1 cut(s)	223
PfeI	GAWTC	5 cut(s)	151, 475, 695, 705, 830
PflMI	CCANNNNNTGG	1 cut(s)	747
PkrI	GCNGC	2 cut(s)	187, 859
PscI	ACATGT	1 cut(s)	905
Psp6I	CCWGG	4 cut(s)	246, 299, 766, 940
PspEI	GGTNACC	1 cut(s)	50
PspFI	CCCAGC	2 cut(s)	273, 996
PspGI	CCWGG	4 cut(s)	246, 299, 766, 940
PspN4I	GGNNCC	4 cut(s)	112, 306, 631, 739
PspPI	GGNCC	2 cut(s)	395, 466
PstI	CTGCAG	3 cut(s)	150, 592, 862
PstNI	CAGNNNCTG	2 cut(s)	38, 857
PsuI	RGATCY	2 cut(s)	524, 577
PvuII	CAGCTG	1 cut(s)	992
RsaI	GTAC	1 cut(s)	904
RsaNI	GTAC	1 cut(s)	903
RseI	CAYNNNNRTG	1 cut(s)	1133
SapI	GCTCTTC	1 cut(s)	223
SaqAI	TTAA	3 cut(s)	267, 582, 812
SatI	GCNGC	2 cut(s)	186, 858
Sau3AI	GATC	3 cut(s)	524, 577, 1000
Sau96I	GGNCC	2 cut(s)	395, 466
ScrFI	CCNGG	4 cut(s)	248, 301, 768, 942
SduI	GDGCHC	2 cut(s)	307, 879
SfaNI	GCATC	3 cut(s)	412, 424, 1127
SfcI	CTRYAG	5 cut(s)	146, 540, 588, 858, 880
SinI	GGWCC	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	1133
Sse9I	AATT	4 cut(s)	222, 870, 892, 924
SsiI	CCGC	3 cut(s)	23, 130, 185
SspI	AATATT	2 cut(s)	981, 1050
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	4 cut(s)	246, 299, 766, 940
StyI	CCWWGG	3 cut(s)	469, 648, 897
TaaI	ACNGT	4 cut(s)	56, 122, 265, 1132
TaiI	ACGT	1 cut(s)	1073
TaqI	TCGA	1 cut(s)	964
TasI	AATT	4 cut(s)	222, 870, 892, 924
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	5 cut(s)	151, 475, 695, 705, 830
Tru1I	TTAA	3 cut(s)	267, 582, 812
Tru9I	TTAA	3 cut(s)	267, 582, 812
TscAI	CASTG	4 cut(s)	39, 112, 150, 1137
TseFI	GTSAC	2 cut(s)	50, 64
TseI	GCWGC	1 cut(s)	857
Tsp45I	GTSAC	2 cut(s)	50, 64
TspDTI	ATGAA	5 cut(s)	17, 516, 785, 822, 879
TspGWI	ACGGA	1 cut(s)	426
TspRI	CASTG	4 cut(s)	39, 112, 150, 1137
Van91I	CCANNNNNTGG	1 cut(s)	747
VpaK11BI	GGWCC	1 cut(s)	466
XbaI	TCTAGA	1 cut(s)	491
XceI	RCATGY	1 cut(s)	909
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XspI	CTAG	1 cut(s)	492
Zsp2I	ATGCAT	1 cut(s)	824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.