Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000943

Physical Location & Seq

Genomic Coordinates Forward (+)

61259204 .. 61272933

Gene Structure 13730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G036890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGAAGAGAGAGATGAGGTTGGGAGGTCTGACCTGTACGTGCGAGCTGAAAAGCTCCGGTACGGCGGCGGTGGTGGATTTGCCGGAGAGAGTGAGGAGGTGCGCACGTTAGCGTCGGGGTGTGGAATTGAGAAGGAGGAGTGTATAAATTCCACAGACGGTGAGTTGCAGATTTGGGACACTCTGCAGAATCAGACGATAGTATCAGTAGGGGTGCATAGTGCAGTACATGGGGTTGCTTCTGTTGCTTGTAGCTCGTTGATTGGAGCTGACAAAGTTATCAGCCTGGGTAGGGATGGAACTGTTAAGTGCTGGGATATTGGAGATGGAGGTCTATCCAGGTTTCCCTTTGTGACGATCCCGACGAATGCTTACCACTTCTGTAAGCTTTCGTTGGTAAAGAGACGTCATTCTTGTTCTACACAAGTTGACGGGCCAAAGCATCATGACGGAGGTGAGCGGGAGACTACTGGTGCAGATACTCTGGATGATAATGAAGAAAATGTCCAAGGGTATCTGTCTGAGCAGTCTAGAACCAATGAAGAAAATACTAAAGTTGGAGGATCTAAATACATTGATATAGTTGAGATTTGGGATCTTAATACTGCAGAAAAGTGTATGCGACTACCTCAAAACTGTTCTGCTAGCTCATCAGCTATTTCTACCAAGGAAAGAGAAATGTGCATGGCAGTTCAATTATTTTTACCATTGGAATCACAGGGATTCCTAAATGTCATGGCTGGTTGTAAGGATGGCTCCATGCTTTGGTGGGATATTAGAAATCCAGGTGTTCCAGTTACATCTGTCAAGTTTCATTCAGAGCCAGTTTTAAGCCTATGCATTTATGGTTCATGCAATGGTGGTATCTTAGGAGCTACATATGAAAAAATTGTGCTCTACAGTTTGGATAATTCCATGGTAACTTTCCCATCTTTCACCTCTATTCGACCTGATGGTAAAATATTTGCAACAGCTGGTTGGGATCACAGAGTGAGAGTATATAACTATCGCAAAGGAAATGCTTTGGCAATATTGAAGTATCAACATGCAACGTGTAATGCAGTCTCTTATTCAACAGATTGTAAGCTAATGGCCTCTGCATCAGAGGACACAGTGGTGGGACTTTGGAAACTCTATACTCCTCAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006282 GO:0006810 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0009555 GO:0009636 GO:0009663 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010162 GO:0010431 GO:0010496 GO:0010497 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031461 GO:0031570 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034330 GO:0035670 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045216 GO:0045786 GO:0045787 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048609 GO:0048700 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0071156 GO:0071158 GO:0071695 GO:0071840 GO:0072718 GO:0080008 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090567 GO:0097327 GO:0097439 GO:0099402 GO:1902494 GO:1990234 GO:2000026 GO:2000280 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

383

Amino Acids

41.89

Weight (kDa)

5.37

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_TEP1_2nd	PF25047	41 - 109	2.1e-06	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	256 - 380	1.8e-06	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	313 - 380	6e-11	WDR5 beta-propeller domain
WD40_Prp19	PF24814	313 - 378	4.8e-09	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	314 - 378	1.9e-09	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29860
fragaria_vesca	FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120
malus_domestica	MD08G1017100.v1.1 MD15G1016100.v1.1 MD15G1017900.v1.1 MD15G1018000.v1.1
prunus_persica	Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1
pyrus_communis	pycom08g01490 pycom15g01390
rosa_chinensis	RchiOBHm_Chr6g0272131 RchiOBHm_Chr6g0302231
rosa_laevigata	RLG00000011183 RLG00000013699
rosa_multiflora	Rmu_sc0013301.1_g000007 Rmu_sc0027601.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165940 Rroxscaffold_7G00196580
rosa_rugosa	Rorug06G0065900 Rorug06G0313400.1
rosa_samantha	Rh6AG183100 Rh6BG184000 Rh6BG476300 Rh6CG184400 Rh6DG176100 Rh6DG425800
rosa_wichuraiana	Rw4G012510 Rw6G015760 Rw6G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	409
Acc16I	TGCGCA	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	765
AccBSI	CCGCTC	1 cut(s)	460
AciI	CCGC	3 cut(s)	66, 69, 460
AclWI	GGATC	4 cut(s)	352, 571, 603, 990
AcsI	RAATTY	1 cut(s)	148
AcyI	GRCGYC	1 cut(s)	406
AdeI	CACNNNGTG	1 cut(s)	991
AfaI	GTAC	3 cut(s)	38, 62, 228
AfiI	CCNNNNNNNGG	2 cut(s)	292, 765
AflIII	ACRYGT	1 cut(s)	1052
AgsI	TTSAA	3 cut(s)	695, 1036, 1074
AjnI	CCWGG	3 cut(s)	285, 338, 784
AleI	CACNNNNGTG	1 cut(s)	1115
Alw21I	GWGCWC	1 cut(s)	897
Alw26I	GTCTC	3 cut(s)	397, 458, 1069
AlwI	GGATC	4 cut(s)	352, 571, 603, 990
AoxI	GGCC	2 cut(s)	434, 1092
ApoI	RAATTY	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	434
AsuHPI	GGTGA	3 cut(s)	173, 467, 928
AsuNHI	GCTAGC	1 cut(s)	644
BaeI	ACNNNNGTAYC	2 cut(s)	186, 219
Bbv12I	GWGCWC	1 cut(s)	897
BccI	CCATC	5 cut(s)	290, 320, 746, 937, 947
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	3 cut(s)	287, 340, 786
BcoDI	GTCTC	3 cut(s)	397, 458, 1069
BfaI	CTAG	2 cut(s)	531, 645
BfmI	CTRYAG	3 cut(s)	185, 606, 898
BisI	GCNGC	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	68
Bme1390I	CCNGG	3 cut(s)	287, 340, 786
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	1 cut(s)	757
BmrFI	CCNGG	3 cut(s)	287, 340, 786
BmsI	GCATC	2 cut(s)	451, 1109
BmtI	GCTAGC	1 cut(s)	648
BsaAI	YACGTR	1 cut(s)	40
BsaHI	GRCGYC	1 cut(s)	406
BsaJI	CCNNGG	4 cut(s)	286, 508, 666, 915
BsaWI	WCCGGW	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 765
Bse1I	ACTGG	3 cut(s)	475, 794, 824
Bse3DI	GCAATG	1 cut(s)	862
BseBI	CCWGG	3 cut(s)	287, 340, 786
BseDI	CCNNGG	4 cut(s)	286, 508, 666, 915
BseGI	GGATG	3 cut(s)	301, 493, 757
BseLI	CCNNNNNNNGG	2 cut(s)	292, 765
BseMI	GCAATG	1 cut(s)	862
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	3 cut(s)	475, 794, 824
BseRI	GAGGAG	3 cut(s)	110, 152, 1131
BseYI	CCCAGC	1 cut(s)	312
BsgI	GTGCAG	2 cut(s)	243, 495
BshFI	GGCC	2 cut(s)	436, 1094
BsiHKAI	GWGCWC	1 cut(s)	897
BsiSI	CCGG	2 cut(s)	58, 84
BslFI	GGGAC	2 cut(s)	191, 1134
BslI	CCNNNNNNNGG	2 cut(s)	292, 765
BsmAI	GTCTC	3 cut(s)	397, 458, 1069
BsmBI	CGTCTC	1 cut(s)	397
BsmFI	GGGAC	2 cut(s)	191, 1134
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	2 cut(s)	436, 1094
Bsp1286I	GDGCHC	1 cut(s)	897
Bsp143I	GATC	4 cut(s)	357, 563, 595, 982
Bsp19I	CCATGG	1 cut(s)	915
BspACI	CCGC	3 cut(s)	66, 69, 460
BspANI	GGCC	2 cut(s)	436, 1094
BspCNI	CTCAG	1 cut(s)	514
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	757
BspMAI	CTGCAG	2 cut(s)	189, 610
BspOI	GCTAGC	1 cut(s)	648
BspPI	GGATC	4 cut(s)	352, 571, 603, 990
BsrBI	CCGCTC	1 cut(s)	460
BsrDI	GCAATG	1 cut(s)	862
BsrI	ACTGG	3 cut(s)	475, 794, 824
BssECI	CCNNGG	4 cut(s)	286, 508, 666, 915
BssMI	GATC	4 cut(s)	357, 563, 595, 982
BssNI	GRCGYC	1 cut(s)	406
BssT1I	CCWWGG	3 cut(s)	508, 666, 915
Bst2UI	CCWGG	3 cut(s)	287, 340, 786
Bst4CI	ACNGT	5 cut(s)	161, 304, 638, 902, 1114
BstACI	GRCGYC	1 cut(s)	406
BstBAI	YACGTR	1 cut(s)	40
BstC8I	GCNNGC	2 cut(s)	45, 646
BstDEI	CTNAG	2 cut(s)	522, 868
BstDSI	CCRYGG	1 cut(s)	915
BstF5I	GGATG	3 cut(s)	301, 493, 757
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	4 cut(s)	360, 566, 598, 985
BstMAI	GTCTC	3 cut(s)	397, 458, 1069
BstMBI	GATC	4 cut(s)	357, 563, 595, 982
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	3 cut(s)	287, 340, 786
BstNSI	RCATGY	1 cut(s)	1049
BstSCI	CCNGG	3 cut(s)	285, 338, 784
BstSFI	CTRYAG	3 cut(s)	185, 606, 898
BstX2I	RGATCY	2 cut(s)	563, 595
BstYI	RGATCY	2 cut(s)	563, 595
BsuRI	GGCC	2 cut(s)	436, 1094
BtgI	CCRYGG	1 cut(s)	915
BtsCI	GGATG	3 cut(s)	301, 493, 757
BtsIMutI	CAGTG	1 cut(s)	1119
Cac8I	GCNNGC	2 cut(s)	45, 646
CciI	TCATGA	1 cut(s)	445
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	434
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	3 cut(s)	37, 61, 227
CviAII	CATG	8 cut(s)	230, 446, 685, 736, 760, 852, 916, 1046
CviQI	GTAC	3 cut(s)	37, 61, 227
DdeI	CTNAG	2 cut(s)	522, 868
DpnI	GATC	4 cut(s)	359, 565, 597, 984
DpnII	GATC	4 cut(s)	357, 563, 595, 982
DraIII	CACNNNGTG	1 cut(s)	991
Eco130I	CCWWGG	3 cut(s)	508, 666, 915
EcoRII	CCWGG	3 cut(s)	285, 338, 784
EcoT14I	CCWWGG	3 cut(s)	508, 666, 915
EcoT22I	ATGCAT	1 cut(s)	842
ErhI	CCWWGG	3 cut(s)	508, 666, 915
Esp3I	CGTCTC	1 cut(s)	397
FaeI	CATG	8 cut(s)	233, 449, 688, 739, 763, 855, 919, 1049
FaqI	GGGAC	2 cut(s)	191, 1134
FatI	CATG	8 cut(s)	229, 445, 684, 735, 759, 851, 915, 1045
FauI	CCCGC	1 cut(s)	453
FauNDI	CATATG	1 cut(s)	880
Fnu4HI	GCNGC	1 cut(s)	67
FokI	GGATG	3 cut(s)	308, 500, 764
Fsp4HI	GCNGC	1 cut(s)	67
FspAI	RTGCGCAY	1 cut(s)	104
FspBI	CTAG	2 cut(s)	531, 645
FspI	TGCGCA	1 cut(s)	104
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	67
GsaI	CCCAGC	1 cut(s)	316
HaeIII	GGCC	2 cut(s)	436, 1094
HapII	CCGG	2 cut(s)	58, 84
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	406
Hin1II	CATG	8 cut(s)	233, 449, 688, 739, 763, 855, 919, 1049
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	3 cut(s)	190, 713, 723
HpaII	CCGG	2 cut(s)	58, 84
HphI	GGTGA	3 cut(s)	173, 467, 928
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	5 cut(s)	31, 195, 523, 820, 1105
Hpy188III	TCNNGA	4 cut(s)	361, 446, 485, 531
Hpy8I	GTNNAC	1 cut(s)	430
Hpy99I	CGWCG	2 cut(s)	118, 367
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	5 cut(s)	161, 304, 638, 902, 1114
HpyCH4IV	ACGT	4 cut(s)	39, 107, 406, 1052
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	2 cut(s)	522, 868
HpySE526I	ACGT	4 cut(s)	39, 107, 406, 1052
Hsp92I	GRCGYC	1 cut(s)	406
Hsp92II	CATG	8 cut(s)	233, 449, 688, 739, 763, 855, 919, 1049
HspAI	GCGC	1 cut(s)	103
Kzo9I	GATC	4 cut(s)	357, 563, 595, 982
LmnI	GCTCC	4 cut(s)	60, 266, 761, 872
LweI	GCATC	2 cut(s)	451, 1109
MaeI	CTAG	2 cut(s)	531, 645
MaeII	ACGT	4 cut(s)	39, 107, 406, 1052
MaeIII	GTNAC	3 cut(s)	352, 796, 919
MalI	GATC	4 cut(s)	359, 565, 597, 984
MbiI	CCGCTC	1 cut(s)	460
MboI	GATC	4 cut(s)	357, 563, 595, 982
MboII	GAAGA	3 cut(s)	17, 509, 554
MflI	RGATCY	2 cut(s)	563, 595
MhlI	GDGCHC	1 cut(s)	897
MluCI	AATT	5 cut(s)	126, 148, 695, 888, 910
MmeI	TCCRAC	1 cut(s)	538
Mph1103I	ATGCAT	1 cut(s)	842
MseI	TTAA	3 cut(s)	306, 600, 830
MslI	CAYNNNNRTG	1 cut(s)	1115
MspA1I	CMGCKG	1 cut(s)	974
MspI	CCGG	2 cut(s)	58, 84
MspR9I	CCNGG	3 cut(s)	287, 340, 786
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	3 cut(s)	287, 340, 786
MwoI	GCNNNNNNNGC	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	915
NdeI	CATATG	1 cut(s)	880
NdeII	GATC	4 cut(s)	357, 563, 595, 982
NheI	GCTAGC	1 cut(s)	644
NlaIII	CATG	8 cut(s)	233, 449, 688, 739, 763, 855, 919, 1049
NlaIV	GGNNCC	1 cut(s)	757
NmuCI	GTSAC	1 cut(s)	352
NsbI	TGCGCA	1 cut(s)	104
NsiI	ATGCAT	1 cut(s)	842
NspI	RCATGY	1 cut(s)	1049
OliI	CACNNNNGTG	1 cut(s)	1115
PagI	TCATGA	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	362
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	3 cut(s)	190, 713, 723
PflMI	CCANNNNNTGG	1 cut(s)	765
PkrI	GCNGC	1 cut(s)	68
Ppu21I	YACGTR	1 cut(s)	40
Psp6I	CCWGG	3 cut(s)	285, 338, 784
PspFI	CCCAGC	1 cut(s)	312
PspGI	CCWGG	3 cut(s)	285, 338, 784
PspN4I	GGNNCC	1 cut(s)	757
PspPI	GGNCC	1 cut(s)	434
PstI	CTGCAG	2 cut(s)	189, 610
PsuI	RGATCY	2 cut(s)	563, 595
PvuII	CAGCTG	1 cut(s)	974
RsaI	GTAC	3 cut(s)	38, 62, 228
RsaNI	GTAC	3 cut(s)	37, 61, 227
RseI	CAYNNNNRTG	1 cut(s)	1115
SaqAI	TTAA	3 cut(s)	306, 600, 830
SatI	GCNGC	1 cut(s)	67
Sau3AI	GATC	4 cut(s)	357, 563, 595, 982
Sau96I	GGNCC	1 cut(s)	434
ScrFI	CCNGG	3 cut(s)	287, 340, 786
SduI	GDGCHC	1 cut(s)	897
SfaNI	GCATC	2 cut(s)	451, 1109
SfcI	CTRYAG	3 cut(s)	185, 606, 898
SmiMI	CAYNNNNRTG	1 cut(s)	1115
Sse9I	AATT	5 cut(s)	126, 148, 695, 888, 910
SsiI	CCGC	3 cut(s)	66, 69, 460
SspI	AATATT	2 cut(s)	963, 1032
SspMI	CTAG	2 cut(s)	531, 645
StyD4I	CCNGG	3 cut(s)	285, 338, 784
StyI	CCWWGG	3 cut(s)	508, 666, 915
TaaI	ACNGT	5 cut(s)	161, 304, 638, 902, 1114
TaiI	ACGT	4 cut(s)	42, 110, 409, 1055
TaqI	TCGA	1 cut(s)	946
TasI	AATT	5 cut(s)	126, 148, 695, 888, 910
TatI	WGTACW	1 cut(s)	226
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	3 cut(s)	190, 713, 723
Tru1I	TTAA	3 cut(s)	306, 600, 830
Tru9I	TTAA	3 cut(s)	306, 600, 830
TscAI	CASTG	1 cut(s)	1119
TseFI	GTSAC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	5 cut(s)	510, 555, 803, 840, 897
TspGWI	ACGGA	1 cut(s)	465
TspRI	CASTG	1 cut(s)	1119
Van91I	CCANNNNNTGG	1 cut(s)	765
XapI	RAATTY	1 cut(s)	148
XbaI	TCTAGA	1 cut(s)	530
XceI	RCATGY	1 cut(s)	1049
XspI	CTAG	2 cut(s)	531, 645
ZraI	GACGTC	1 cut(s)	407
Zsp2I	ATGCAT	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.