Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000943

Physical Location & Seq

Genomic Coordinates Reverse (-)

7564412 .. 7568352

Gene Structure 3941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00165940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAACCAACAGAGACGGCCACCGCCGGACCCAGTGGCTGTGCTTAGAGGTCACCTTGCCTCTGTCACCGATCTCTGTTTCCATCCGTCTCAACCTCTCCTATACACTGGTTCTGCAGACGGTGAGTTGCGGATTTGGGACACTATGCAGAATCGGACGATAGTTTCAGCAGGGGTGCACAGTGCAGCAACTGGGGTTGCTTCTGTTGCTTGCAGCTCGTCGATTGGAGCTGACAAAGTTATCAGCCAGGGTAGGGATGGAACTGTCAAGTGCTGGGATATTGGAGATGGAGGTCTATCCAGGACTCCCTCTGTGACGATCGTCACGAATGCTGACCACTTCTGTAAGCTTTCGTTGGTGAAGAGACCTCATTCTTGTTCTACACAAGTTGACGGGCCAAAGCATCATGACGGAGGTGAGCGGGAGACTACTGGTGCAGATACTCTGGATGATAATGAAGACAAGGTCCAAGGGTATCTGTCGGAGCAGTCTAGAACCAATGAAGGCTCAATTGTTCATAATCTTCATGTGGTTGATGTGCCAAGGTTGAGATTTGGGATCTTAATACTGCAGAAAGGTGTATGCGACTACCTCAAAGCTGTTCTGCTGGCTCCTCAGCTATTTCTACCAAGGAAAGAGGGATTCCTAAATGTCGTGGCTGGTTATGAGGATGGCTCCATGCCTTGGTGGGATATTAGAAATCTAGGTGTTCCAGTTACATCTGTCAAGTTTCATTTAGAGCCAGTTTTAAGCCTATGCATTGATGGTTCATGCAATGGTGGTATCTCAGGAGCTGCAGATGAAAAAATTGTGCTCTACAGTTTGGATAATTCCATGTGTAATGCAGTCTCTTATTCAACAGATTGTAAGCTAATGGCCTCTGCATCAGAGGACACAGTAGTGGCACTTTGGAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006282 GO:0006810 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0009555 GO:0009636 GO:0009663 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010162 GO:0010431 GO:0010496 GO:0010497 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031461 GO:0031570 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034330 GO:0035670 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045216 GO:0045786 GO:0045787 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048609 GO:0048700 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0071156 GO:0071158 GO:0071695 GO:0071840 GO:0072718 GO:0080008 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090567 GO:0097327 GO:0097439 GO:0099402 GO:1902494 GO:1990234 GO:2000026 GO:2000280 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

306

Amino Acids

32.94

Weight (kDa)

5.65

Isoelectric Point (pI)

29.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40	PF00400	11 - 47	2.7e-10	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	12 - 102	1.8e-10	WDR5 beta-propeller domain
WD40_Prp19	PF24814	12 - 97	4e-08	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	13 - 97	1.5e-11	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	14 - 97	1.1e-08	THOC3 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	26 - 95	1.1e-07	TEP-1 second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29860
fragaria_vesca	FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120 FvH4_2g39120
malus_domestica	MD08G1017100.v1.1 MD15G1016100.v1.1 MD15G1017900.v1.1 MD15G1018000.v1.1
prunus_persica	Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1 Prupe.1G369900_v2.0.a1
pyrus_communis	pycom08g01490 pycom15g01390
rosa_chinensis	RchiOBHm_Chr6g0272131 RchiOBHm_Chr6g0302231
rosa_laevigata	RLG00000011183 RLG00000013699
rosa_multiflora	Rmu_sc0013301.1_g000007 Rmu_sc0027601.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165940 Rroxscaffold_7G00196580
rosa_rugosa	Rorug06G0065900 Rorug06G0313400.1
rosa_samantha	Rh6AG183100 Rh6BG184000 Rh6BG476300 Rh6CG184400 Rh6DG176100 Rh6DG425800
rosa_wichuraiana	Rw4G012510 Rw6G015760 Rw6G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	684
AccBSI	CCGCTC	1 cut(s)	421
AciI	CCGC	3 cut(s)	23, 130, 421
AclWI	GGATC	1 cut(s)	566
AcoI	YGGCCR	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	253, 684
AgsI	TTSAA	1 cut(s)	858
AjnI	CCWGG	2 cut(s)	246, 299
AleI	CACNNNNGTG	1 cut(s)	899
AluBI	AGCT	7 cut(s)	216, 230, 349, 599, 619, 794, 871
AluI	AGCT	7 cut(s)	216, 230, 349, 599, 619, 794, 871
Alw21I	GWGCWC	2 cut(s)	180, 816
Alw26I	GTCTC	5 cut(s)	7, 93, 358, 419, 853
Alw44I	GTGCAC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	566
AlwNI	CAGNNNCTG	3 cut(s)	38, 191, 794
AoxI	GGCC	3 cut(s)	17, 395, 876
ApaLI	GTGCAC	1 cut(s)	176
ApeKI	GCWGC	3 cut(s)	185, 213, 794
AspS9I	GGNCC	3 cut(s)	28, 395, 466
AsuHPI	GGTGA	5 cut(s)	44, 58, 134, 370, 428
AvaII	GGWCC	2 cut(s)	28, 466
BaeGI	GKGCMC	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	2 cut(s)	180, 816
BbvCI	CCTCAGC	1 cut(s)	615
BbvI	GCAGC	3 cut(s)	197, 225, 781
BccI	CCATC	5 cut(s)	90, 251, 281, 665, 758
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	2 cut(s)	248, 301
BcoDI	GTCTC	5 cut(s)	7, 93, 358, 419, 853
BfaI	CTAG	2 cut(s)	492, 704
BfmI	CTRYAG	4 cut(s)	114, 569, 795, 817
BisI	GCNGC	3 cut(s)	186, 214, 795
BlsI	GCNGC	3 cut(s)	187, 215, 796
Bme1390I	CCNGG	2 cut(s)	248, 301
Bme18I	GGWCC	2 cut(s)	28, 466
BmgT120I	GGNCC	3 cut(s)	28, 395, 466
BmiI	GGNNCC	3 cut(s)	30, 612, 676
BmrFI	CCNGG	2 cut(s)	248, 301
BmrI	ACTGGG	2 cut(s)	26, 201
BmsI	GCATC	2 cut(s)	412, 893
BmuI	ACTGGG	2 cut(s)	26, 201
BoxI	GACNNNNGTC	1 cut(s)	320
BpiI	GAAGAC	1 cut(s)	465
BplI	GAGNNNNNCTC	2 cut(s)	659, 691
Bpu10I	CCTNAGC	1 cut(s)	615
BsaI	GGTCTC	1 cut(s)	358
BsaJI	CCNNGG	5 cut(s)	247, 469, 542, 629, 683
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 684
Bse1I	ACTGG	6 cut(s)	32, 112, 196, 436, 713, 743
Bse3DI	GCAATG	1 cut(s)	781
BseBI	CCWGG	2 cut(s)	248, 301
BseDI	CCNNGG	5 cut(s)	247, 469, 542, 629, 683
BseGI	GGATG	4 cut(s)	82, 262, 454, 676
BseLI	CCNNNNNNNGG	2 cut(s)	253, 684
BseMI	GCAATG	1 cut(s)	781
BseMII	CTCAG	2 cut(s)	629, 801
BseNI	ACTGG	6 cut(s)	32, 112, 196, 436, 713, 743
BseRI	GAGGAG	1 cut(s)	603
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	3 cut(s)	197, 225, 781
BseYI	CCCAGC	1 cut(s)	273
BsgI	GTGCAG	2 cut(s)	204, 456
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	3 cut(s)	19, 397, 878
BsiEI	CGRYCG	1 cut(s)	321
BsiHKAI	GWGCWC	2 cut(s)	180, 816
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	253, 684
BsmAI	GTCTC	5 cut(s)	7, 93, 358, 419, 853
BsmBI	CGTCTC	2 cut(s)	7, 93
BsmFI	GGGAC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	3 cut(s)	19, 397, 878
Bso31I	GGTCTC	1 cut(s)	358
Bsp1286I	GDGCHC	2 cut(s)	180, 816
Bsp143I	GATC	3 cut(s)	70, 318, 558
BspACI	CCGC	3 cut(s)	23, 130, 421
BspANI	GGCC	3 cut(s)	19, 397, 878
BspCNI	CTCAG	2 cut(s)	628, 800
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	3 cut(s)	30, 612, 676
BspMAI	CTGCAG	3 cut(s)	118, 573, 799
BspPI	GGATC	1 cut(s)	566
BspTNI	GGTCTC	1 cut(s)	358
BsrBI	CCGCTC	1 cut(s)	421
BsrDI	GCAATG	1 cut(s)	781
BsrI	ACTGG	6 cut(s)	32, 112, 196, 436, 713, 743
BssECI	CCNNGG	5 cut(s)	247, 469, 542, 629, 683
BssMI	GATC	3 cut(s)	70, 318, 558
BssT1I	CCWWGG	4 cut(s)	469, 542, 629, 683
Bst2UI	CCWGG	2 cut(s)	248, 301
Bst4CI	ACNGT	5 cut(s)	122, 182, 265, 821, 898
Bst6I	CTCTTC	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	211, 609
BstDEI	CTNAG	3 cut(s)	44, 615, 787
BstEII	GGTNACC	1 cut(s)	50
BstF5I	GGATG	4 cut(s)	82, 262, 454, 676
BstKTI	GATC	3 cut(s)	73, 321, 561
BstMAI	GTCTC	5 cut(s)	7, 93, 358, 419, 853
BstMBI	GATC	3 cut(s)	70, 318, 558
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	2 cut(s)	248, 301
BstPAI	GACNNNNGTC	1 cut(s)	320
BstPI	GGTNACC	1 cut(s)	50
BstSCI	CCNGG	2 cut(s)	246, 299
BstSFI	CTRYAG	4 cut(s)	114, 569, 795, 817
BstSLI	GKGCMC	1 cut(s)	180
BstV1I	GCAGC	3 cut(s)	197, 225, 781
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	558
BsuRI	GGCC	3 cut(s)	19, 397, 878
BtsCI	GGATG	4 cut(s)	82, 262, 454, 676
BtsIMutI	CAGTG	3 cut(s)	39, 105, 187
Cac8I	GCNNGC	2 cut(s)	211, 609
CaiI	CAGNNNCTG	3 cut(s)	38, 191, 794
CciI	TCATGA	1 cut(s)	406
Cfr13I	GGNCC	3 cut(s)	28, 395, 466
CviAII	CATG	5 cut(s)	407, 527, 679, 771, 835
DdeI	CTNAG	3 cut(s)	44, 615, 787
DpnI	GATC	3 cut(s)	72, 320, 560
DpnII	GATC	3 cut(s)	70, 318, 558
EaeI	YGGCCR	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Eco130I	CCWWGG	4 cut(s)	469, 542, 629, 683
Eco31I	GGTCTC	1 cut(s)	358
Eco47I	GGWCC	2 cut(s)	28, 466
Eco91I	GGTNACC	1 cut(s)	50
EcoO65I	GGTNACC	1 cut(s)	50
EcoRII	CCWGG	2 cut(s)	246, 299
EcoT14I	CCWWGG	4 cut(s)	469, 542, 629, 683
EcoT22I	ATGCAT	1 cut(s)	761
ErhI	CCWWGG	4 cut(s)	469, 542, 629, 683
Esp3I	CGTCTC	2 cut(s)	7, 93
FaeI	CATG	5 cut(s)	410, 530, 682, 774, 838
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	5 cut(s)	406, 526, 678, 770, 834
FauI	CCCGC	1 cut(s)	414
Fnu4HI	GCNGC	3 cut(s)	186, 214, 795
FokI	GGATG	4 cut(s)	69, 269, 461, 683
Fsp4HI	GCNGC	3 cut(s)	186, 214, 795
FspBI	CTAG	2 cut(s)	492, 704
GluI	GCNGC	3 cut(s)	186, 214, 795
GsaI	CCCAGC	1 cut(s)	277
HaeIII	GGCC	3 cut(s)	19, 397, 878
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	5 cut(s)	410, 530, 682, 774, 838
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	3 cut(s)	151, 304, 642
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	5 cut(s)	44, 58, 134, 370, 428
Hpy166II	GTNNAC	2 cut(s)	178, 391
Hpy188I	TCNGA	3 cut(s)	156, 484, 889
Hpy188III	TCNNGA	5 cut(s)	325, 407, 446, 492, 789
Hpy8I	GTNNAC	2 cut(s)	178, 391
Hpy99I	CGWCG	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	497
HpyCH4III	ACNGT	5 cut(s)	122, 182, 265, 821, 898
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	3 cut(s)	44, 615, 787
Hsp92II	CATG	5 cut(s)	410, 530, 682, 774, 838
Kzo9I	GATC	3 cut(s)	70, 318, 558
LmnI	GCTCC	5 cut(s)	227, 484, 616, 680, 791
Lsp1109I	GCAGC	3 cut(s)	197, 225, 781
LweI	GCATC	2 cut(s)	412, 893
MaeI	CTAG	2 cut(s)	492, 704
MaeIII	GTNAC	5 cut(s)	50, 64, 313, 322, 715
MalI	GATC	3 cut(s)	72, 320, 560
MbiI	CCGCTC	1 cut(s)	421
MboI	GATC	3 cut(s)	70, 318, 558
MboII	GAAGA	3 cut(s)	373, 470, 515
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	1 cut(s)	558
MhlI	GDGCHC	2 cut(s)	180, 816
MluCI	AATT	3 cut(s)	510, 807, 829
MlyI	GAGTC	1 cut(s)	298
MmeI	TCCRAC	1 cut(s)	462
Mph1103I	ATGCAT	1 cut(s)	761
MseI	TTAA	2 cut(s)	563, 749
MslI	CAYNNNNRTG	1 cut(s)	899
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	2 cut(s)	248, 301
MunI	CAATTG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	2 cut(s)	248, 301
MwoI	GCNNNNNNNGC	1 cut(s)	206
NdeII	GATC	3 cut(s)	70, 318, 558
NlaIII	CATG	5 cut(s)	410, 530, 682, 774, 838
NlaIV	GGNNCC	3 cut(s)	30, 612, 676
NmuCI	GTSAC	4 cut(s)	50, 64, 313, 322
NsiI	ATGCAT	1 cut(s)	761
OliI	CACNNNNGTG	1 cut(s)	899
PagI	TCATGA	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	323
PctI	GAATGC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	151, 642
PflFI	GACNNNGTC	1 cut(s)	464
PflMI	CCANNNNNTGG	1 cut(s)	684
PfoI	TCCNGGA	1 cut(s)	299
PkrI	GCNGC	3 cut(s)	187, 215, 796
Ple19I	CGATCG	1 cut(s)	321
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PshAI	GACNNNNGTC	1 cut(s)	320
Psp6I	CCWGG	2 cut(s)	246, 299
PspEI	GGTNACC	1 cut(s)	50
PspFI	CCCAGC	1 cut(s)	273
PspGI	CCWGG	2 cut(s)	246, 299
PspN4I	GGNNCC	3 cut(s)	30, 612, 676
PspPI	GGNCC	3 cut(s)	28, 395, 466
PstI	CTGCAG	3 cut(s)	118, 573, 799
PstNI	CAGNNNCTG	3 cut(s)	38, 191, 794
PsuI	RGATCY	1 cut(s)	558
PsyI	GACNNNGTC	1 cut(s)	464
PvuI	CGATCG	1 cut(s)	321
RseI	CAYNNNNRTG	1 cut(s)	899
SaqAI	TTAA	2 cut(s)	563, 749
SatI	GCNGC	3 cut(s)	186, 214, 795
Sau3AI	GATC	3 cut(s)	70, 318, 558
Sau96I	GGNCC	3 cut(s)	28, 395, 466
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	2 cut(s)	248, 301
SduI	GDGCHC	2 cut(s)	180, 816
SfaNI	GCATC	2 cut(s)	412, 893
SfcI	CTRYAG	4 cut(s)	114, 569, 795, 817
SinI	GGWCC	2 cut(s)	28, 466
SmiMI	CAYNNNNRTG	1 cut(s)	899
Sse9I	AATT	3 cut(s)	510, 807, 829
SsiI	CCGC	3 cut(s)	23, 130, 421
SspMI	CTAG	2 cut(s)	492, 704
StyD4I	CCNGG	2 cut(s)	246, 299
StyI	CCWWGG	4 cut(s)	469, 542, 629, 683
TaaI	ACNGT	5 cut(s)	122, 182, 265, 821, 898
TaqI	TCGA	1 cut(s)	221
TasI	AATT	3 cut(s)	510, 807, 829
TfiI	GAWTC	2 cut(s)	151, 642
Tru1I	TTAA	2 cut(s)	563, 749
Tru9I	TTAA	2 cut(s)	563, 749
TscAI	CASTG	3 cut(s)	39, 112, 187
TseFI	GTSAC	4 cut(s)	50, 64, 313, 322
TseI	GCWGC	3 cut(s)	185, 213, 794
Tsp45I	GTSAC	4 cut(s)	50, 64, 313, 322
TspDTI	ATGAA	8 cut(s)	17, 471, 506, 515, 516, 722, 759, 816
TspGWI	ACGGA	2 cut(s)	75, 426
TspRI	CASTG	3 cut(s)	39, 112, 187
Tth111I	GACNNNGTC	1 cut(s)	464
Van91I	CCANNNNNTGG	1 cut(s)	684
VneI	GTGCAC	1 cut(s)	176
VpaK11BI	GGWCC	2 cut(s)	28, 466
XbaI	TCTAGA	1 cut(s)	491
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XspI	CTAG	2 cut(s)	492, 704
Zsp2I	ATGCAT	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.