AT4G31080

Predicted integral membrane zinc-ribbon metal-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010402
Physical Location & Seq
Forward (+)
15120824 .. 15123527
2704 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31080.1

Sequence Viewer

Length: 1230 bp
ATGGCGCAGGAGCAGGAAGGAGCGGTCGTTGAGAAAGGTGAGCCGAATGATTCCTCCGCCGCTGCCGTGGCCGCAACCGCAACCGCAACCGCCGATAGCGTGAAGAAGAAGCAAAATGGATTCTTTTCGCGTTTGTGGAATGGGATATTTAGGGTTAGAGGTGACGATTTCGAGAAGAGACTTCAATACATCTCAAGGGAAGAAGCTACTGTTTTATCAAGGATGAAGCGTAGATCGATTTCATGGAGGAAACTCACCAGAAATCTCATCGTTTCCTCTGTATTATTCGAGATAATTGCTGTGGGTTATGCGATCCTGACAACCAGAACGGAAGATTTGGATTGGAGAATGAGGAGTTTCCGGATCTTGCCAATGTTTATCTTACCTGCTGTTTCTGCTCTTGCTTATTCCTCAATCGTCAGCTTCTCAAAGATGTTTGACCGCAGAGATCAAAAGACCTTGGAAAAGCTTCGAGCTGAAAGGTTGGCGAAAATCAATGAACTTAAAGAAAGGACCAATTATTATACCACACAACAACTTATTCAGAGATATGACCCGGACCCAGCTGCAAAGGCAGCTGCCGCAACTGTCCTGGCATCCAAATTGGGTGCCGATTCAGGCTTGAAAGTATATTTAGGAGATGAATCCCAACTCGATCCATCCTCGGGCAAGAGCAATGACATGGAGGTTAACCAATCACGTGGGTTGAGGAATCGAAGGCAACCAAATACAAGACCCCACGGTTCTGGGAGCACTTCAACACATCATTCTGATGATGAGTCTCACCATTCTGGAACAAGCGAGAGATTTCCAGGCACCACAGAGCAAAACCAGCAGATGTTGGTTGAGCATTACAGCCCTCAGGGATATGCTGCTCATGATGGCAGTTGGATCTCACGCATTGCGGCTCTACTTGTGGGCGAAGATCCCACACAATCATATGCGCTCATTTGTGGAAACTGTCGTATGCACAATGGACTTGCTCGGAAAGAGGATTTTGCTTACATTACATACTATTGCCCTCACTGTAATGCTCTGAACAAACCGAAGCATTCAGAGGAGAATGTACTTCTTCCTGCTATTTCCGCTTCACCAATCACAGACTCTCTGCCACTGATTGAGACCAGCGAAGTGGTTAATAGCAGCAGCTCGAGTAGTGAACGTGGAAGTAGCCCCACTCCAGAAATAAAAGAGGAAGCTGCAATTACTGAGACCGGGACACCGAGCTGA

Protein Analysis

409

Amino Acids

45.34

Weight (kDa)

7.16

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_10 PF10058 297 - 347 5.2e-20 ER junction formation factor lunapark, zinc ribbon finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 394
AccB1I GGYRCC 2 cut(s) 608, 815
AccBSI CCGCTC 1 cut(s) 23
AccII CGCG 1 cut(s) 130
AccIII TCCGGA 1 cut(s) 360
AclWI GGATC 5 cut(s) 307, 371, 650, 899, 920
AcoI YGGCCR 1 cut(s) 69
AcvI CACGTG 1 cut(s) 701
AfaI GTAC 1 cut(s) 1068
AfiI CCNNNNNNNGG 1 cut(s) 665
AgsI TTSAA 3 cut(s) 185, 625, 759
AjnI CCWGG 2 cut(s) 591, 811
AluBI AGCT 9 cut(s) 206, 423, 469, 476, 566, 578, 1149, 1199, 1227
AluI AGCT 9 cut(s) 206, 423, 469, 476, 566, 578, 1149, 1199, 1227
Alw21I GWGCWC 1 cut(s) 755
Alw26I GTCTC 4 cut(s) 172, 786, 1115, 1205
AlwI GGATC 5 cut(s) 307, 371, 650, 899, 920
Ama87I CYCGRG 2 cut(s) 664, 1150
Aor13HI TCCGGA 1 cut(s) 360
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 8 cut(s) 62, 566, 575, 578, 872, 1143, 1146, 1199
Asp700I GAANNNNTTC 1 cut(s) 468
AspLEI GCGC 2 cut(s) 7, 946
AspS9I GGNCC 2 cut(s) 513, 559
AsuC2I CCSGG 2 cut(s) 557, 1216
AsuHPI GGTGA 5 cut(s) 50, 173, 247, 776, 1083
AvaI CYCGRG 2 cut(s) 664, 1150
AvaII GGWCC 2 cut(s) 513, 559
AxyI CCTNAGG 1 cut(s) 861
BanI GGYRCC 2 cut(s) 608, 815
BbrPI CACGTG 1 cut(s) 701
Bbv12I GWGCWC 1 cut(s) 755
BbvI GCAGC 8 cut(s) 49, 553, 565, 587, 859, 1155, 1158, 1186
BccI CCATC 2 cut(s) 667, 875
BceAI ACGGC 1 cut(s) 50
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciT130I CCWGG 2 cut(s) 593, 813
BcnI CCSGG 2 cut(s) 557, 1216
BcoDI GTCTC 4 cut(s) 172, 786, 1115, 1205
BfuAI ACCTGC 1 cut(s) 394
Bme1390I CCNGG 4 cut(s) 557, 593, 813, 1216
Bme18I GGWCC 2 cut(s) 513, 559
BmeT110I CYCGRG 2 cut(s) 664, 1150
BmgT120I GGNCC 2 cut(s) 513, 559
BmiI GGNNCC 3 cut(s) 561, 610, 817
BmrFI CCNGG 4 cut(s) 557, 593, 813, 1216
BmsI GCATC 1 cut(s) 605
BpmI CTGGAG 1 cut(s) 1164
BpuEI CTTGAG 1 cut(s) 178
BpuMI CCSGG 2 cut(s) 557, 1216
Bsa29I ATCGAT 1 cut(s) 236
BsaAI YACGTR 1 cut(s) 701
BsaI GGTCTC 2 cut(s) 1115, 1205
BsaJI CCNNGG 4 cut(s) 66, 459, 663, 739
BsaWI WCCGGW 1 cut(s) 360
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 1 cut(s) 665
Bse21I CCTNAGG 1 cut(s) 861
Bse3DI GCAATG 2 cut(s) 682, 900
BseAI TCCGGA 1 cut(s) 360
BseBI CCWGG 2 cut(s) 593, 813
BseCI ATCGAT 1 cut(s) 236
BseDI CCNNGG 4 cut(s) 66, 459, 663, 739
BseGI GGATG 3 cut(s) 228, 596, 659
BseLI CCNNNNNNNGG 1 cut(s) 665
BseMI GCAATG 2 cut(s) 682, 900
BseMII CTCAG 2 cut(s) 875, 1200
BseRI GAGGAG 2 cut(s) 367, 1073
BseXI GCAGC 8 cut(s) 49, 553, 565, 587, 859, 1155, 1158, 1186
BseYI CCCAGC 1 cut(s) 562
Bsh1236I CGCG 1 cut(s) 130
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 1 cut(s) 71
BshNI GGYRCC 2 cut(s) 608, 815
BshVI ATCGAT 1 cut(s) 236
BsiEI CGRYCG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 755
BsiHKCI CYCGRG 2 cut(s) 664, 1150
BsiSI CCGG 3 cut(s) 361, 557, 1215
BslI CCNNNNNNNGG 1 cut(s) 665
BsmAI GTCTC 4 cut(s) 172, 786, 1115, 1205
BsmI GAATGC 1 cut(s) 1051
BsnI GGCC 1 cut(s) 71
Bso31I GGTCTC 2 cut(s) 1115, 1205
BsoBI CYCGRG 2 cut(s) 664, 1150
Bsp1286I GDGCHC 1 cut(s) 755
Bsp13I TCCGGA 1 cut(s) 360
Bsp143I GATC 7 cut(s) 233, 312, 363, 448, 655, 891, 925
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 2 cut(s) 874, 1201
BspDI ATCGAT 1 cut(s) 236
BspEI TCCGGA 1 cut(s) 360
BspFNI CGCG 1 cut(s) 130
BspHI TCATGA 1 cut(s) 877
BspLI GGNNCC 3 cut(s) 561, 610, 817
BspMI ACCTGC 1 cut(s) 394
BspPI GGATC 5 cut(s) 307, 371, 650, 899, 920
BspT107I GGYRCC 2 cut(s) 608, 815
BspTNI GGTCTC 2 cut(s) 1115, 1205
BsrBI CCGCTC 1 cut(s) 23
BsrDI GCAATG 2 cut(s) 682, 900
BssECI CCNNGG 4 cut(s) 66, 459, 663, 739
BssMI GATC 7 cut(s) 233, 312, 363, 448, 655, 891, 925
BssT1I CCWWGG 1 cut(s) 459
Bst2UI CCWGG 2 cut(s) 593, 813
Bst4CI ACNGT 5 cut(s) 211, 589, 743, 962, 1028
Bst6I CTCTTC 1 cut(s) 170
BstBAI YACGTR 1 cut(s) 701
BstDEI CTNAG 2 cut(s) 861, 1209
BstDSI CCRYGG 2 cut(s) 66, 739
BstF5I GGATG 3 cut(s) 228, 596, 659
BstFNI CGCG 1 cut(s) 130
BstHHI GCGC 2 cut(s) 7, 946
BstKTI GATC 7 cut(s) 236, 315, 366, 451, 658, 894, 928
BstMAI GTCTC 4 cut(s) 172, 786, 1115, 1205
BstMBI GATC 7 cut(s) 233, 312, 363, 448, 655, 891, 925
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 9 cut(s) 68, 71, 77, 395, 572, 575, 581, 832, 1085
BstNI CCWGG 2 cut(s) 593, 813
BstSCI CCNGG 4 cut(s) 555, 591, 811, 1214
BstUI CGCG 1 cut(s) 130
BstV1I GCAGC 8 cut(s) 49, 553, 565, 587, 859, 1155, 1158, 1186
BstX2I RGATCY 3 cut(s) 363, 891, 925
BstXI CCANNNNNNTGG 3 cut(s) 701, 746, 1132
BstYI RGATCY 3 cut(s) 363, 891, 925
Bsu15I ATCGAT 1 cut(s) 236
Bsu36I CCTNAGG 1 cut(s) 861
BsuRI GGCC 1 cut(s) 71
BsuTUI ATCGAT 1 cut(s) 236
BtgI CCRYGG 2 cut(s) 66, 739
BtsCI GGATG 3 cut(s) 228, 596, 659
BtsIMutI CAGTG 2 cut(s) 1024, 1112
BveI ACCTGC 1 cut(s) 394
CciI TCATGA 1 cut(s) 877
CfoI GCGC 2 cut(s) 7, 946
Cfr13I GGNCC 2 cut(s) 513, 559
ClaI ATCGAT 1 cut(s) 236
Csp6I GTAC 1 cut(s) 1067
CviAII CATG 3 cut(s) 243, 682, 878
CviQI GTAC 1 cut(s) 1067
DdeI CTNAG 2 cut(s) 861, 1209
DpnI GATC 7 cut(s) 235, 314, 365, 450, 657, 893, 927
DpnII GATC 7 cut(s) 233, 312, 363, 448, 655, 891, 925
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
EciI GGCGGA 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 459
Eco31I GGTCTC 2 cut(s) 1115, 1205
Eco47I GGWCC 2 cut(s) 513, 559
Eco72I CACGTG 1 cut(s) 701
Eco81I CCTNAGG 1 cut(s) 861
Eco88I CYCGRG 2 cut(s) 664, 1150
EcoRII CCWGG 2 cut(s) 591, 811
EcoT14I CCWWGG 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 459
FaeI CATG 3 cut(s) 246, 685, 881
FatI CATG 3 cut(s) 242, 681, 877
FauNDI CATATG 1 cut(s) 940
FokI GGATG 3 cut(s) 235, 583, 646
GlaI GCGC 2 cut(s) 6, 945
GsaI CCCAGC 1 cut(s) 566
GsuI CTGGAG 1 cut(s) 1164
HaeIII GGCC 1 cut(s) 71
HapII CCGG 3 cut(s) 361, 557, 1215
HhaI GCGC 2 cut(s) 7, 946
Hin1II CATG 3 cut(s) 246, 685, 881
Hin6I GCGC 2 cut(s) 5, 944
HinP1I GCGC 2 cut(s) 5, 944
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 7 cut(s) 50, 120, 614, 644, 712, 779, 1103
HpaI GTTAAC 1 cut(s) 691
HpaII CCGG 3 cut(s) 361, 557, 1215
HphI GGTGA 5 cut(s) 50, 173, 247, 776, 1083
Hpy166II GTNNAC 2 cut(s) 691, 1160
Hpy188I TCNGA 5 cut(s) 546, 772, 987, 1038, 1057
Hpy188III TCNNGA 7 cut(s) 172, 289, 316, 361, 792, 878, 1181
Hpy8I GTNNAC 2 cut(s) 691, 1160
HpyAV CCTTC 2 cut(s) 11, 711
HpyCH4III ACNGT 5 cut(s) 211, 589, 743, 962, 1028
HpyCH4IV ACGT 2 cut(s) 700, 1162
HpyCH4V TGCA 3 cut(s) 569, 970, 1202
HpyF10VI GCNNNNNNNGC 9 cut(s) 68, 71, 77, 395, 572, 575, 581, 832, 1085
HpyF3I CTNAG 2 cut(s) 861, 1209
HpySE526I ACGT 2 cut(s) 700, 1162
Hsp92II CATG 3 cut(s) 246, 685, 881
HspAI GCGC 2 cut(s) 5, 944
Kpn2I TCCGGA 1 cut(s) 360
KspAI GTTAAC 1 cut(s) 691
Kzo9I GATC 7 cut(s) 233, 312, 363, 448, 655, 891, 925
LmnI GCTCC 3 cut(s) 10, 20, 750
Lsp1109I GCAGC 8 cut(s) 49, 553, 565, 587, 859, 1155, 1158, 1186
LweI GCATC 1 cut(s) 605
MaeII ACGT 2 cut(s) 700, 1162
MaeIII GTNAC 1 cut(s) 161
MalI GATC 7 cut(s) 235, 314, 365, 450, 657, 893, 927
MbiI CCGCTC 1 cut(s) 23
MboI GATC 7 cut(s) 233, 312, 363, 448, 655, 891, 925
MboII GAAGA 7 cut(s) 115, 118, 187, 212, 344, 935, 1064
MflI RGATCY 3 cut(s) 363, 891, 925
MhlI GDGCHC 1 cut(s) 755
MluCI AATT 4 cut(s) 294, 517, 602, 1203
MlyI GAGTC 2 cut(s) 788, 1097
MmeI TCCRAC 1 cut(s) 869
MroI TCCGGA 1 cut(s) 360
MroXI GAANNNNTTC 1 cut(s) 468
MseI TTAA 3 cut(s) 504, 690, 1137
MslI CAYNNNNRTG 2 cut(s) 771, 1029
MspA1I CMGCKG 3 cut(s) 62, 566, 578
MspI CCGG 3 cut(s) 361, 557, 1215
MspR9I CCNGG 4 cut(s) 557, 593, 813, 1216
Mva1269I GAATGC 1 cut(s) 1051
MvaI CCWGG 2 cut(s) 593, 813
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 9 cut(s) 68, 71, 77, 395, 572, 575, 581, 832, 1085
NciI CCSGG 2 cut(s) 557, 1216
NdeI CATATG 1 cut(s) 940
NdeII GATC 7 cut(s) 233, 312, 363, 448, 655, 891, 925
NlaIII CATG 3 cut(s) 246, 685, 881
NlaIV GGNNCC 3 cut(s) 561, 610, 817
NmuCI GTSAC 1 cut(s) 161
PaeR7I CTCGAG 1 cut(s) 1150
PagI TCATGA 1 cut(s) 877
PctI GAATGC 1 cut(s) 1051
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 5 cut(s) 50, 120, 614, 644, 712
PleI GAGTC 2 cut(s) 787, 1097
PmaCI CACGTG 1 cut(s) 701
PmlI CACGTG 1 cut(s) 701
PpsI GAGTC 2 cut(s) 787, 1097
Ppu21I YACGTR 1 cut(s) 701
Psp6I CCWGG 2 cut(s) 591, 811
PspCI CACGTG 1 cut(s) 701
PspFI CCCAGC 1 cut(s) 562
PspGI CCWGG 2 cut(s) 591, 811
PspN4I GGNNCC 3 cut(s) 561, 610, 817
PspPI GGNCC 2 cut(s) 513, 559
PspXI VCTCGAGB 1 cut(s) 1150
PsuI RGATCY 3 cut(s) 363, 891, 925
PvuII CAGCTG 2 cut(s) 566, 578
RsaI GTAC 1 cut(s) 1068
RsaNI GTAC 1 cut(s) 1067
RseI CAYNNNNRTG 2 cut(s) 771, 1029
SaqAI TTAA 3 cut(s) 504, 690, 1137
Sau3AI GATC 7 cut(s) 233, 312, 363, 448, 655, 891, 925
Sau96I GGNCC 2 cut(s) 513, 559
SchI GAGTC 2 cut(s) 788, 1097
ScrFI CCNGG 4 cut(s) 557, 593, 813, 1216
SduI GDGCHC 1 cut(s) 755
SfaNI GCATC 1 cut(s) 605
Sfr274I CTCGAG 1 cut(s) 1150
SinI GGWCC 2 cut(s) 513, 559
SlaI CTCGAG 1 cut(s) 1150
SmiMI CAYNNNNRTG 2 cut(s) 771, 1029
SmlI CTYRAG 2 cut(s) 193, 1150
SmoI CTYRAG 2 cut(s) 193, 1150
Sse9I AATT 4 cut(s) 294, 517, 602, 1203
StyD4I CCNGG 4 cut(s) 555, 591, 811, 1214
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 5 cut(s) 211, 589, 743, 962, 1028
TaiI ACGT 2 cut(s) 703, 1165
TaqI TCGA 7 cut(s) 171, 236, 288, 472, 654, 715, 1151
TasI AATT 4 cut(s) 294, 517, 602, 1203
TatI WGTACW 1 cut(s) 1066
TauI GCSGC 4 cut(s) 62, 74, 584, 908
TfiI GAWTC 5 cut(s) 50, 120, 614, 644, 712
Tru1I TTAA 3 cut(s) 504, 690, 1137
Tru9I TTAA 3 cut(s) 504, 690, 1137
TscAI CASTG 2 cut(s) 1031, 1119
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 8 cut(s) 62, 566, 575, 578, 872, 1143, 1146, 1199
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 4 cut(s) 231, 239, 513, 657
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 2 cut(s) 1031, 1119
VpaK11BI GGWCC 2 cut(s) 513, 559
XhoI CTCGAG 1 cut(s) 1150
XmnI GAANNNNTTC 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.