Rh6DG513700

Predicted integral membrane zinc-ribbon metal-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010402
Physical Location & Seq
Forward (+)
66606881 .. 66611110
4230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG513700.1

Sequence Viewer

Length: 1239 bp
ATGGCGGATGACAAAGGCCTTGAAGGCGACAAGAGCGACGCCCCCGCCCCCGCCGCCGCCGCTACGCCTCCGGCGGTGCCGAAGAAGAATCGCAAGGGATTTTTTTCCAGAATGTTTACCGGCATGTTTCGGCACCGGGACGATTTCGAGAAGCGGCTGCAGTATCTCTCTAAGGAGGAGATTACTGTGGTCAATAGAATCAACAGGAGGGCTCTGACTCGGAGAAGCTTCACCAGAAACGTCATTGCATTCTCTATTTTTTTCGAGGTTATCGCAATTGGTTATGCTATAGCAACCACGAGAACGACTGACTTGGACTGGAGGACGAGGACATTTCGAATTTTGCCAATGTTTCTGTTGCCTGCTTTGTCTTCTTTTACTTATTCAACATTTATGAACTTCACAAGGATGCGTGATCGCAAAGATAATAAGACCCTGGAAAGGCTCCGGGCTGAAAAGCAAGCAAAAATTGATGAACTTAAAGAGAAGACAAACTATTACTCTACTCAACAGCTTATTCAGAAATATGATGCTGACCCAGCAGCAAAGGCAGCTGCTGCAACTGTCCTGGCATCTAAGTTGGGTGCGGATTCAGGCCTAAGATTCCATGTAGGAGATGAATCTAGAGCTAATGCCCCATCTGGGAGAAGCAAGGATGTTGAACTTGTCCAGTCTGGTGAACTTCGAAACCGGAAAACAGGACTCACCAGATCTAATAGTACAGGGAGTACACAATTGCTTTTTTCTGAGGAAGAGACTCCTTGTTCTGTTGGGTCTGAGGGTCCCCAGACTGCTGAGCATGGTCAGCTGGTTGTTGCTCATCAGAATCCTCAAGCATATGCTGCACAAGATGGAAATTGGATTGCTCGTATTGCAGCATTACTTGTGGGTGAGGATCCAACACAATCTTATGCCCTCATATGTGGCAACTGTCATATGCACAATGGGCTTGCTAAGAAGGAGGATTTCGCATACATTACTTATTATTGCCCACACTGTCATGCTCTAAATAGGCCAAAGCATTTGGAAGGGGGTGTTACTGGTTCAGGTTCTCCTGATTCGGGATCTCTGACAGCAGGGGACAGGAGTGATGTAGCAAACCAGGCCAGTGATACTTTGAATGACAGTGTCGTCACAGGTACCAGCTCAGTTGTAGCTGGTCCTGAGATTGAGCAAATAACTGAGAGGCTTGTGTCGGGTGATACAGATACAGTTAGTTTAGAAGAAAAACACGAGTAG

Protein Analysis

412

Amino Acids

45.34

Weight (kDa)

7.15

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_10 PF10058 287 - 337 3.9e-20 ER junction formation factor lunapark, zinc ribbon finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1130
Acc65I GGTACC 1 cut(s) 1139
AccB1I GGYRCC 3 cut(s) 76, 132, 1139
AciI CCGC 9 cut(s) 5, 45, 51, 54, 57, 60, 74, 154, 587
AclWI GGATC 3 cut(s) 890, 903, 1072
AcsI RAATTY 1 cut(s) 339
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 3 cut(s) 721, 730, 1141
AfiI CCNNNNNNNGG 3 cut(s) 441, 642, 1061
AgsI TTSAA 4 cut(s) 23, 387, 662, 1120
AjnI CCWGG 3 cut(s) 435, 567, 1101
AluBI AGCT 7 cut(s) 228, 514, 554, 629, 808, 1146, 1157
AluI AGCT 7 cut(s) 228, 514, 554, 629, 808, 1146, 1157
Alw26I GTCTC 1 cut(s) 749
AlwI GGATC 3 cut(s) 890, 903, 1072
AlwNI CAGNNNCTG 1 cut(s) 557
AoxI GGCC 4 cut(s) 16, 595, 1013, 1104
ApeKI GCWGC 7 cut(s) 157, 542, 551, 554, 557, 842, 875
ApoI RAATTY 1 cut(s) 339
Asp718I GGTACC 1 cut(s) 1139
AspS9I GGNCC 2 cut(s) 782, 1160
AsuC2I CCSGG 2 cut(s) 137, 449
AsuHPI GGTGA 5 cut(s) 223, 689, 697, 902, 1211
AsuII TTCGAA 2 cut(s) 337, 685
AvaII GGWCC 2 cut(s) 782, 1160
BamHI GGATCC 1 cut(s) 895
BanI GGYRCC 3 cut(s) 76, 132, 1139
BanII GRGCYC 1 cut(s) 214
BauI CACGAG 2 cut(s) 298, 1232
BbsI GAAGAC 2 cut(s) 363, 494
BbvI GCAGC 7 cut(s) 144, 541, 544, 554, 563, 829, 887
BccI CCATC 2 cut(s) 646, 845
BciT130I CCWGG 3 cut(s) 437, 569, 1103
BcnI CCSGG 2 cut(s) 137, 449
BcoDI GTCTC 1 cut(s) 749
BfaI CTAG 1 cut(s) 624
BfmI CTRYAG 2 cut(s) 158, 288
BglI GCCNNNNNGGC 1 cut(s) 24
BglII AGATCT 1 cut(s) 710
BlpI GCTNAGC 1 cut(s) 795
Bme1390I CCNGG 5 cut(s) 137, 437, 449, 569, 1103
Bme18I GGWCC 2 cut(s) 782, 1160
BmgT120I GGNCC 2 cut(s) 782, 1160
BmiI GGNNCC 7 cut(s) 78, 134, 446, 783, 784, 897, 1141
BmrFI CCNGG 5 cut(s) 137, 437, 449, 569, 1103
BmsI GCATC 3 cut(s) 399, 520, 581
BpiI GAAGAC 2 cut(s) 363, 494
BpmI CTGGAG 1 cut(s) 340
Bpu1102I GCTNAGC 1 cut(s) 795
Bpu14I TTCGAA 2 cut(s) 337, 685
BpuEI CTTGAG 1 cut(s) 816
BpuMI CCSGG 2 cut(s) 137, 449
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 435
BsaWI WCCGGW 1 cut(s) 690
Bsc4I CCNNNNNNNGG 3 cut(s) 441, 642, 1061
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 4 cut(s) 323, 670, 1045, 1107
Bse3DI GCAATG 1 cut(s) 243
BseBI CCWGG 3 cut(s) 437, 569, 1103
BseDI CCNNGG 1 cut(s) 435
BseGI GGATG 3 cut(s) 13, 414, 661
BseLI CCNNNNNNNGG 3 cut(s) 441, 642, 1061
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 6 cut(s) 738, 768, 786, 1155, 1161, 1173
BseNI ACTGG 4 cut(s) 323, 670, 1045, 1107
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 7 cut(s) 144, 541, 544, 554, 563, 829, 887
BseYI CCCAGC 1 cut(s) 538
BsgI GTGCAG 1 cut(s) 828
BshFI GGCC 4 cut(s) 18, 597, 1015, 1106
BshNI GGYRCC 3 cut(s) 76, 132, 1139
BsiSI CCGG 5 cut(s) 71, 120, 136, 448, 691
BslFI GGGAC 3 cut(s) 152, 768, 1094
BslI CCNNNNNNNGG 3 cut(s) 441, 642, 1061
BsmAI GTCTC 1 cut(s) 749
BsmFI GGGAC 3 cut(s) 152, 768, 1094
BsmI GAATGC 1 cut(s) 248
BsnI GGCC 4 cut(s) 18, 597, 1015, 1106
Bsp119I TTCGAA 2 cut(s) 337, 685
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 4 cut(s) 415, 710, 895, 1064
Bsp1720I GCTNAGC 1 cut(s) 795
BspACI CCGC 9 cut(s) 5, 45, 51, 54, 57, 60, 74, 154, 587
BspANI GGCC 4 cut(s) 18, 597, 1015, 1106
BspCNI CTCAG 6 cut(s) 739, 769, 787, 1156, 1160, 1174
BspLI GGNNCC 7 cut(s) 78, 134, 446, 783, 784, 897, 1141
BspMAI CTGCAG 1 cut(s) 162
BspPI GGATC 3 cut(s) 890, 903, 1072
BspT104I TTCGAA 2 cut(s) 337, 685
BspT107I GGYRCC 3 cut(s) 76, 132, 1139
BsrDI GCAATG 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 4 cut(s) 323, 670, 1045, 1107
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 435
BssMI GATC 4 cut(s) 415, 710, 895, 1064
BssNI GRCGYC 1 cut(s) 39
BssSI CACGAG 2 cut(s) 298, 1232
Bst2BI CACGAG 2 cut(s) 298, 1232
Bst2UI CCWGG 3 cut(s) 437, 569, 1103
Bst4CI ACNGT 6 cut(s) 187, 565, 932, 998, 1127, 1213
Bst6I CTCTTC 1 cut(s) 747
BstACI GRCGYC 1 cut(s) 39
BstAPI GCANNNNNTGC 2 cut(s) 557, 842
BstBI TTCGAA 2 cut(s) 337, 685
BstC8I GCNNGC 3 cut(s) 363, 462, 951
BstF5I GGATG 3 cut(s) 13, 414, 661
BstKTI GATC 4 cut(s) 418, 713, 898, 1067
BstMAI GTCTC 1 cut(s) 749
BstMBI GATC 4 cut(s) 415, 710, 895, 1064
BstNI CCWGG 3 cut(s) 437, 569, 1103
BstNSI RCATGY 1 cut(s) 127
BstSCI CCNGG 5 cut(s) 135, 435, 447, 567, 1101
BstSFI CTRYAG 2 cut(s) 158, 288
BstV1I GCAGC 7 cut(s) 144, 541, 544, 554, 563, 829, 887
BstV2I GAAGAC 2 cut(s) 363, 494
BstX2I RGATCY 3 cut(s) 710, 895, 1064
BstYI RGATCY 3 cut(s) 710, 895, 1064
BsuRI GGCC 4 cut(s) 18, 597, 1015, 1106
BtsCI GGATG 3 cut(s) 13, 414, 661
BtsIMutI CAGTG 3 cut(s) 994, 1114, 1132
Cac8I GCNNGC 3 cut(s) 363, 462, 951
CaiI CAGNNNCTG 1 cut(s) 557
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 2 cut(s) 782, 1160
CseI GACGC 1 cut(s) 47
Csp6I GTAC 3 cut(s) 720, 729, 1140
CviAII CATG 4 cut(s) 124, 608, 800, 1001
CviQI GTAC 3 cut(s) 720, 729, 1140
DpnI GATC 4 cut(s) 417, 712, 897, 1066
DpnII GATC 4 cut(s) 415, 710, 895, 1064
DrdI GACNNNNNNGTC 1 cut(s) 1130
DseDI GACNNNNNNGTC 1 cut(s) 1130
Eam1104I CTCTTC 1 cut(s) 747
EarI CTCTTC 1 cut(s) 747
EciI GGCGGA 1 cut(s) 20
Eco147I AGGCCT 2 cut(s) 18, 597
Eco24I GRGCYC 1 cut(s) 214
Eco47I GGWCC 2 cut(s) 782, 1160
EcoO109I RGGNCCY 1 cut(s) 782
EcoRII CCWGG 3 cut(s) 435, 567, 1101
EcoT38I GRGCYC 1 cut(s) 214
FaeI CATG 4 cut(s) 127, 611, 803, 1004
FaqI GGGAC 3 cut(s) 152, 768, 1094
FatI CATG 4 cut(s) 123, 607, 799, 1000
FauI CCCGC 2 cut(s) 52, 58
FauNDI CATATG 3 cut(s) 838, 920, 936
FokI GGATG 3 cut(s) 20, 421, 668
FriOI GRGCYC 1 cut(s) 214
FspBI CTAG 1 cut(s) 624
GsaI CCCAGC 1 cut(s) 542
GsuI CTGGAG 1 cut(s) 340
HaeIII GGCC 4 cut(s) 18, 597, 1015, 1106
HapII CCGG 5 cut(s) 71, 120, 136, 448, 691
HgaI GACGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 4 cut(s) 127, 611, 803, 1004
HindIII AAGCTT 1 cut(s) 226
HpaII CCGG 5 cut(s) 71, 120, 136, 448, 691
HphI GGTGA 5 cut(s) 223, 689, 697, 902, 1211
Hpy166II GTNNAC 3 cut(s) 117, 680, 731
Hpy188I TCNGA 7 cut(s) 216, 222, 522, 748, 778, 825, 1071
Hpy188III TCNNGA 6 cut(s) 108, 148, 624, 1055, 1062, 1163
Hpy8I GTNNAC 3 cut(s) 117, 680, 731
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 3 cut(s) 17, 952, 1022
HpyCH4III ACNGT 6 cut(s) 187, 565, 932, 998, 1127, 1213
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 6 cut(s) 160, 248, 560, 845, 875, 940
HpySE526I ACGT 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 4 cut(s) 127, 611, 803, 1004
KflI GGGWCCC 1 cut(s) 782
KpnI GGTACC 1 cut(s) 1143
Kzo9I GATC 4 cut(s) 415, 710, 895, 1064
LmnI GCTCC 1 cut(s) 450
Lsp1109I GCAGC 7 cut(s) 144, 541, 544, 554, 563, 829, 887
LweI GCATC 3 cut(s) 399, 520, 581
MaeI CTAG 1 cut(s) 624
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 2 cut(s) 1036, 1132
MalI GATC 4 cut(s) 417, 712, 897, 1066
MboI GATC 4 cut(s) 415, 710, 895, 1064
MboII GAAGA 6 cut(s) 94, 97, 363, 499, 764, 1235
MfeI CAATTG 2 cut(s) 276, 734
MflI RGATCY 3 cut(s) 710, 895, 1064
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 5 cut(s) 276, 339, 468, 734, 856
MlyI GAGTC 3 cut(s) 211, 696, 751
MmeI TCCRAC 1 cut(s) 923
MseI TTAA 1 cut(s) 480
MslI CAYNNNNRTG 2 cut(s) 407, 999
MspA1I CMGCKG 2 cut(s) 554, 808
MspI CCGG 5 cut(s) 71, 120, 136, 448, 691
MspR9I CCNGG 5 cut(s) 137, 437, 449, 569, 1103
MunI CAATTG 2 cut(s) 276, 734
Mva1269I GAATGC 1 cut(s) 248
MvaI CCWGG 3 cut(s) 437, 569, 1103
NciI CCSGG 2 cut(s) 137, 449
NdeI CATATG 3 cut(s) 838, 920, 936
NdeII GATC 4 cut(s) 415, 710, 895, 1064
NlaIII CATG 4 cut(s) 127, 611, 803, 1004
NlaIV GGNNCC 7 cut(s) 78, 134, 446, 783, 784, 897, 1141
NmuCI GTSAC 1 cut(s) 1132
NspI RCATGY 1 cut(s) 127
NspV TTCGAA 2 cut(s) 337, 685
PceI AGGCCT 2 cut(s) 18, 597
PctI GAATGC 1 cut(s) 248
PfeI GAWTC 7 cut(s) 88, 198, 590, 603, 620, 826, 1058
PflFI GACNNNGTC 1 cut(s) 1127
PleI GAGTC 3 cut(s) 211, 696, 751
PpsI GAGTC 3 cut(s) 211, 696, 751
PpuMI RGGWCCY 1 cut(s) 782
Psp5II RGGWCCY 1 cut(s) 782
Psp6I CCWGG 3 cut(s) 435, 567, 1101
PspFI CCCAGC 1 cut(s) 538
PspGI CCWGG 3 cut(s) 435, 567, 1101
PspN4I GGNNCC 7 cut(s) 78, 134, 446, 783, 784, 897, 1141
PspPI GGNCC 2 cut(s) 782, 1160
PspPPI RGGWCCY 1 cut(s) 782
PstI CTGCAG 1 cut(s) 162
PstNI CAGNNNCTG 1 cut(s) 557
PsuI RGATCY 3 cut(s) 710, 895, 1064
PsyI GACNNNGTC 1 cut(s) 1127
PvuII CAGCTG 2 cut(s) 554, 808
RsaI GTAC 3 cut(s) 721, 730, 1141
RsaNI GTAC 3 cut(s) 720, 729, 1140
RseI CAYNNNNRTG 2 cut(s) 407, 999
SaqAI TTAA 1 cut(s) 480
Sau3AI GATC 4 cut(s) 415, 710, 895, 1064
Sau96I GGNCC 2 cut(s) 782, 1160
SchI GAGTC 3 cut(s) 211, 696, 751
ScrFI CCNGG 5 cut(s) 137, 437, 449, 569, 1103
SduI GDGCHC 1 cut(s) 214
SfaNI GCATC 3 cut(s) 399, 520, 581
SfcI CTRYAG 2 cut(s) 158, 288
SfuI TTCGAA 2 cut(s) 337, 685
SinI GGWCC 2 cut(s) 782, 1160
SmiMI CAYNNNNRTG 2 cut(s) 407, 999
SmlI CTYRAG 1 cut(s) 831
SmoI CTYRAG 1 cut(s) 831
Sse9I AATT 5 cut(s) 276, 339, 468, 734, 856
SseBI AGGCCT 2 cut(s) 18, 597
SsiI CCGC 9 cut(s) 5, 45, 51, 54, 57, 60, 74, 154, 587
SspMI CTAG 1 cut(s) 624
StuI AGGCCT 2 cut(s) 18, 597
StyD4I CCNGG 5 cut(s) 135, 435, 447, 567, 1101
TaaI ACNGT 6 cut(s) 187, 565, 932, 998, 1127, 1213
TaiI ACGT 1 cut(s) 243
TaqI TCGA 4 cut(s) 147, 264, 337, 685
TasI AATT 5 cut(s) 276, 339, 468, 734, 856
TatI WGTACW 2 cut(s) 719, 728
TauI GCSGC 4 cut(s) 56, 59, 62, 157
TfiI GAWTC 7 cut(s) 88, 198, 590, 603, 620, 826, 1058
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 3 cut(s) 1001, 1114, 1132
TseFI GTSAC 1 cut(s) 1132
TseI GCWGC 7 cut(s) 157, 542, 551, 554, 557, 842, 875
Tsp45I GTSAC 1 cut(s) 1132
TspDTI ATGAA 3 cut(s) 410, 489, 633
TspRI CASTG 3 cut(s) 1001, 1114, 1132
Tth111I GACNNNGTC 1 cut(s) 1127
VpaK11BI GGWCC 2 cut(s) 782, 1160
XapI RAATTY 1 cut(s) 339
XbaI TCTAGA 1 cut(s) 623
XceI RCATGY 1 cut(s) 127
XspI CTAG 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.