Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010402

Physical Location & Seq

Genomic Coordinates Forward (+)

38641748 .. 38645838

Gene Structure 4091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G462700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGCGGACGACAAAGGCGTCGTCGGAGAAGCCGACAAGAAAGACGCGGCAACTGTTCCTGAGGTGGTTGCGAAGAAGAAGCGCAAGGGACTTTTCTCCAGAATGTTCAGTGGGATCTTCCGATTACACGGCGATGACTTCGAGAAGCGGCTCAAGTACATTTCCAAAGAAGAAGCCACTGTCCTTGCTAGAATGCAGAGGAGGTCCATAACGTGGAGGCGCATGAGCAGACATCTCATTCTCTTCTCTGTCTTATTTGAGATTATTGCAATTGCTTATGCTATAATATCAACGAGAGCAACAAATTTAGATTGGAAGATGAGGACATTTCGAATTCTTCCGATGTTTCTTCTGCCTGCTTTATCTTTTCTTGCTTATTCAGCATTTGTGACCTTCACAAGAATGCGTGATCGCAAGGACGCCAAAACCCTGGAAAGGCTTCGGGCTGAAAGGCAAGCAAAAATTGATGAACTAAAAGAGAGGACAAATTATTACACTACTCAACAGCTTATTCAGAGATATGATCCTGACCCAGCAGCAAAGGCAGCTGCTGCAACTGTCCTAGCATCTAAGTTGGGTACAGATTCAGGTCTGAAATTCTACGTGGGAGATGAATCTGAGATTAATGCCTCAACAGGGAAAAGCAATGATGTTGAACTTGTCCATTCTGGTGAACTTCGAAACCGTAAACCAGTACACACCAGATCTAATAGTACAGGGAGTGTCCCATTGACTATTCCTGAAGAGGAGGCACCTCGTTCTGCAAGGTCTGACGGTCATCAGGTTTCTGAGCATAGTCAACTGATTGTTAGTCATCATAGTCCTCAGGGAGCATCTCCACAGGATGGAGGATGGATTGCTCGGATTGCAGCATTACTTGTGGGTGAGGATCCAACACAGTCTTATGCACTCATATGTGGCAACTGTCATATGCACAATGGGCTTGCTAAGAAGGAGGATTTCCCATACATCACCTATTATTGCCCGCACTGTCACGCCCTAAATCAGCCAAAACATTTGGAAGGGCGTGTTTCTGGTTCTAACACGCCTATCACCCCTAGTTTGAGCTCTTTGAGAGCAGGGGTCAGCAGTGAGGCAACAAAGCACGCTGGTGACTCTTTGGATGACAGTGTACTCACAAGTACCAGCCCTGTTAGAGCTGGTTCAGAGATTGAGGAAGAAACCGAAAAGCCTGCGTCCGGCGATACAGTTAGTTTAGAAAAACATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006996 GO:0007029 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0071782 GO:0071786 GO:0071840 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zinc_ribbon_10

Protein Analysis

411

Amino Acids

45.48

Weight (kDa)

8.69

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31080 AT4G31080
fragaria_vesca	FvH4_2g30651 FvH4_2g30651 FvH4_2g30651
malus_domestica	MD08G1133800.v1.1 MD15G1110400.v1.1
prunus_persica	Prupe.1G462700_v2.0.a1 Prupe.1G462700_v2.0.a1 Prupe.1G462700_v2.0.a1
pyrus_communis	pycom08g11260 pycom15g10060 pycom15g10070
rosa_chinensis	RchiOBHm_Chr6g0312251
rosa_roxburghii	Rroxscaffold_7G00156910
rosa_rugosa	Rorug06G0394400
rosa_samantha	Rh6AG511500 Rh6BG522600 Rh6CG528300 Rh6DG513700
rosa_wichuraiana	Rw6G044490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
AccB1I	GGYRCC	1 cut(s)	751
AccB7I	CCANNNNNTGG	2 cut(s)	213, 845
AccII	CGCG	1 cut(s)	47
AciI	CCGC	4 cut(s)	5, 47, 148, 986
AclWI	GGATC	4 cut(s)	122, 518, 884, 897
AcsI	RAATTY	3 cut(s)	304, 333, 596
AcuI	CTGAAG	1 cut(s)	762
AcyI	GRCGYC	2 cut(s)	18, 420
AfaI	GTAC	6 cut(s)	158, 580, 696, 715, 1134, 1144
AfiI	CCNNNNNNNGG	5 cut(s)	213, 435, 636, 845, 1199
AgsI	TTSAA	1 cut(s)	656
AjnI	CCWGG	1 cut(s)	429
AleI	CACNNNNGTG	1 cut(s)	1110
AluBI	AGCT	4 cut(s)	508, 548, 1068, 1160
AluI	AGCT	4 cut(s)	508, 548, 1068, 1160
Alw21I	GWGCWC	1 cut(s)	1070
AlwI	GGATC	4 cut(s)	122, 518, 884, 897
AlwNI	CAGNNNCTG	1 cut(s)	551
ApeKI	GCWGC	5 cut(s)	536, 545, 548, 551, 869
ApoI	RAATTY	3 cut(s)	304, 333, 596
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AseI	ATTAAT	1 cut(s)	624
Asp700I	GAANNNNTTC	1 cut(s)	438
AspLEI	GCGC	2 cut(s)	84, 222
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	5 cut(s)	683, 896, 964, 1045, 1124
AsuII	TTCGAA	2 cut(s)	331, 679
AvaII	GGWCC	1 cut(s)	204
AxyI	CCTNAGG	2 cut(s)	60, 825
BamHI	GGATCC	1 cut(s)	889
BanI	GGYRCC	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	1070
Bbv12I	GWGCWC	1 cut(s)	1070
BbvI	GCAGC	5 cut(s)	535, 538, 548, 557, 881
BccI	CCATC	2 cut(s)	839, 846
BceAI	ACGGC	1 cut(s)	145
BcgI	CGANNNNNNTGC	2 cut(s)	1175, 1209
BciT130I	CCWGG	1 cut(s)	431
BfaI	CTAG	3 cut(s)	189, 563, 1059
BglII	AGATCT	1 cut(s)	704
BisI	GCNGC	7 cut(s)	48, 149, 537, 546, 549, 552, 870
BlsI	GCNGC	7 cut(s)	49, 150, 538, 547, 550, 553, 871
Bme1390I	CCNGG	1 cut(s)	431
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	2 cut(s)	753, 891
BmrFI	CCNGG	1 cut(s)	431
BmsI	GCATC	2 cut(s)	575, 842
BpmI	CTGGAG	1 cut(s)	82
Bpu14I	TTCGAA	2 cut(s)	331, 679
BpuEI	CTTGAG	1 cut(s)	137
BsaAI	YACGTR	1 cut(s)	604
BsaHI	GRCGYC	2 cut(s)	18, 420
BsaJI	CCNNGG	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	5 cut(s)	213, 435, 636, 845, 1199
Bse1I	ACTGG	1 cut(s)	692
Bse21I	CCTNAGG	2 cut(s)	60, 825
Bse3DI	GCAATG	1 cut(s)	652
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	3 cut(s)	850, 857, 1129
BseLI	CCNNNNNNNGG	5 cut(s)	213, 435, 636, 845, 1199
BseMI	GCAATG	1 cut(s)	652
BseMII	CTCAG	4 cut(s)	51, 609, 780, 839
BseNI	ACTGG	1 cut(s)	692
BseRI	GAGGAG	2 cut(s)	214, 761
BseXI	GCAGC	5 cut(s)	535, 538, 548, 557, 881
BseYI	CCCAGC	1 cut(s)	532
Bsh1236I	CGCG	1 cut(s)	47
BshNI	GGYRCC	1 cut(s)	751
BsiHKAI	GWGCWC	1 cut(s)	1070
BsiSI	CCGG	1 cut(s)	1200
BslFI	GGGAC	2 cut(s)	102, 710
BslI	CCNNNNNNNGG	5 cut(s)	213, 435, 636, 845, 1199
BsmFI	GGGAC	2 cut(s)	102, 710
BsmI	GAATGC	2 cut(s)	198, 408
Bsp119I	TTCGAA	2 cut(s)	331, 679
Bsp1286I	GDGCHC	1 cut(s)	1070
Bsp143I	GATC	5 cut(s)	114, 409, 523, 704, 889
BspACI	CCGC	4 cut(s)	5, 47, 148, 986
BspCNI	CTCAG	4 cut(s)	52, 610, 781, 838
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	2 cut(s)	753, 891
BspPI	GGATC	4 cut(s)	122, 518, 884, 897
BspT104I	TTCGAA	2 cut(s)	331, 679
BspT107I	GGYRCC	1 cut(s)	751
BsrDI	GCAATG	1 cut(s)	652
BsrI	ACTGG	1 cut(s)	692
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	5 cut(s)	114, 409, 523, 704, 889
BssNI	GRCGYC	2 cut(s)	18, 420
Bst2UI	CCWGG	1 cut(s)	431
Bst6I	CTCTTC	2 cut(s)	248, 738
BstACI	GRCGYC	2 cut(s)	18, 420
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstBAI	YACGTR	1 cut(s)	604
BstBI	TTCGAA	2 cut(s)	331, 679
BstC8I	GCNNGC	6 cut(s)	357, 456, 945, 986, 1107, 1194
BstDEI	CTNAG	6 cut(s)	60, 570, 618, 789, 825, 948
BstF5I	GGATG	3 cut(s)	850, 857, 1129
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	2 cut(s)	84, 222
BstKTI	GATC	5 cut(s)	117, 412, 526, 707, 892
BstMBI	GATC	5 cut(s)	114, 409, 523, 704, 889
BstMWI	GCNNNNNNNGC	6 cut(s)	380, 542, 545, 551, 866, 940
BstNI	CCWGG	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	429
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	5 cut(s)	535, 538, 548, 557, 881
BstX2I	RGATCY	3 cut(s)	114, 704, 889
BstXI	CCANNNNNNTGG	1 cut(s)	430
BstYI	RGATCY	3 cut(s)	114, 704, 889
Bsu36I	CCTNAGG	2 cut(s)	60, 825
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	3 cut(s)	850, 857, 1129
BtsI	GCAGTG	1 cut(s)	1096
BtsIMutI	CAGTG	5 cut(s)	115, 177, 988, 1096, 1135
Cac8I	GCNNGC	6 cut(s)	357, 456, 945, 986, 1107, 1194
CaiI	CAGNNNCTG	1 cut(s)	551
CfoI	GCGC	2 cut(s)	84, 222
Cfr13I	GGNCC	1 cut(s)	204
CseI	GACGC	4 cut(s)	7, 53, 428, 1185
Csp6I	GTAC	6 cut(s)	157, 579, 695, 714, 1133, 1143
CspCI	CAANNNNNGTGG	2 cut(s)	166, 201
CviAII	CATG	2 cut(s)	223, 1226
CviQI	GTAC	6 cut(s)	157, 579, 695, 714, 1133, 1143
DdeI	CTNAG	6 cut(s)	60, 570, 618, 789, 825, 948
DpnI	GATC	5 cut(s)	116, 411, 525, 706, 891
DpnII	GATC	5 cut(s)	114, 409, 523, 704, 889
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	248, 738
EarI	CTCTTC	2 cut(s)	248, 738
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	1068
Eco24I	GRGCYC	1 cut(s)	1070
Eco47I	GGWCC	1 cut(s)	204
Eco53kI	GAGCTC	1 cut(s)	1068
Eco57I	CTGAAG	1 cut(s)	762
Eco81I	CCTNAGG	2 cut(s)	60, 825
EcoICRI	GAGCTC	1 cut(s)	1068
EcoRI	GAATTC	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	429
EcoT38I	GRGCYC	1 cut(s)	1070
FaeI	CATG	2 cut(s)	226, 1229
FaqI	GGGAC	2 cut(s)	102, 710
FatI	CATG	2 cut(s)	222, 1225
FauI	CCCGC	1 cut(s)	993
FauNDI	CATATG	2 cut(s)	914, 930
Fnu4HI	GCNGC	7 cut(s)	48, 149, 537, 546, 549, 552, 870
FokI	GGATG	3 cut(s)	857, 864, 1136
FriOI	GRGCYC	1 cut(s)	1070
Fsp4HI	GCNGC	7 cut(s)	48, 149, 537, 546, 549, 552, 870
FspBI	CTAG	3 cut(s)	189, 563, 1059
GlaI	GCGC	2 cut(s)	83, 221
GluI	GCNGC	7 cut(s)	48, 149, 537, 546, 549, 552, 870
GsaI	CCCAGC	1 cut(s)	536
GsuI	CTGGAG	1 cut(s)	82
HapII	CCGG	1 cut(s)	1200
HgaI	GACGC	4 cut(s)	7, 53, 428, 1185
HhaI	GCGC	2 cut(s)	84, 222
Hin1I	GRCGYC	2 cut(s)	18, 420
Hin1II	CATG	2 cut(s)	226, 1229
Hin6I	GCGC	2 cut(s)	82, 220
HinP1I	GCGC	2 cut(s)	82, 220
HincII	GTYRAC	1 cut(s)	800
HindII	GTYRAC	1 cut(s)	800
HinfI	GANTC	3 cut(s)	584, 614, 1115
HpaII	CCGG	1 cut(s)	1200
HphI	GGTGA	5 cut(s)	683, 896, 964, 1045, 1124
Hpy166II	GTNNAC	5 cut(s)	674, 689, 697, 800, 1133
Hpy188III	TCNNGA	5 cut(s)	59, 99, 142, 527, 740
Hpy8I	GTNNAC	5 cut(s)	674, 689, 697, 800, 1133
Hpy99I	CGWCG	2 cut(s)	23, 26
HpyAV	CCTTC	3 cut(s)	403, 946, 1016
HpyCH4IV	ACGT	2 cut(s)	212, 603
HpyCH4V	TGCA	7 cut(s)	196, 269, 554, 764, 869, 908, 934
HpyF10VI	GCNNNNNNNGC	6 cut(s)	380, 542, 545, 551, 866, 940
HpyF3I	CTNAG	6 cut(s)	60, 570, 618, 789, 825, 948
HpySE526I	ACGT	2 cut(s)	212, 603
Hsp92I	GRCGYC	2 cut(s)	18, 420
Hsp92II	CATG	2 cut(s)	226, 1229
HspAI	GCGC	2 cut(s)	82, 220
Kzo9I	GATC	5 cut(s)	114, 409, 523, 704, 889
LmnI	GCTCC	1 cut(s)	830
Lsp1109I	GCAGC	5 cut(s)	535, 538, 548, 557, 881
LweI	GCATC	2 cut(s)	575, 842
MaeI	CTAG	3 cut(s)	189, 563, 1059
MaeII	ACGT	2 cut(s)	212, 603
MaeIII	GTNAC	3 cut(s)	388, 992, 1112
MalI	GATC	5 cut(s)	116, 411, 525, 706, 891
MboI	GATC	5 cut(s)	114, 409, 523, 704, 889
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	3 cut(s)	114, 704, 889
MhlI	GDGCHC	1 cut(s)	1070
MluCI	AATT	6 cut(s)	270, 304, 333, 462, 487, 596
MlyI	GAGTC	1 cut(s)	1109
MmeI	TCCRAC	2 cut(s)	4, 917
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	1 cut(s)	624
MslI	CAYNNNNRTG	5 cut(s)	132, 401, 669, 913, 1110
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	1 cut(s)	1200
MspR9I	CCNGG	1 cut(s)	431
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	2 cut(s)	198, 408
MvaI	CCWGG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	6 cut(s)	380, 542, 545, 551, 866, 940
NdeI	CATATG	2 cut(s)	914, 930
NdeII	GATC	5 cut(s)	114, 409, 523, 704, 889
NlaIII	CATG	2 cut(s)	226, 1229
NlaIV	GGNNCC	2 cut(s)	753, 891
NmuCI	GTSAC	3 cut(s)	388, 992, 1112
NspV	TTCGAA	2 cut(s)	331, 679
OliI	CACNNNNGTG	1 cut(s)	1110
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 30
PctI	GAATGC	2 cut(s)	198, 408
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	2 cut(s)	584, 614
PflMI	CCANNNNNTGG	2 cut(s)	213, 845
PkrI	GCNGC	7 cut(s)	49, 150, 538, 547, 550, 553, 871
PleI	GAGTC	1 cut(s)	1109
PpsI	GAGTC	1 cut(s)	1109
Ppu21I	YACGTR	1 cut(s)	604
PshBI	ATTAAT	1 cut(s)	624
Psp124BI	GAGCTC	1 cut(s)	1070
Psp6I	CCWGG	1 cut(s)	429
PspFI	CCCAGC	1 cut(s)	532
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	2 cut(s)	753, 891
PspPI	GGNCC	1 cut(s)	204
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	3 cut(s)	114, 704, 889
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	6 cut(s)	158, 580, 696, 715, 1134, 1144
RsaNI	GTAC	6 cut(s)	157, 579, 695, 714, 1133, 1143
RseI	CAYNNNNRTG	5 cut(s)	132, 401, 669, 913, 1110
SacI	GAGCTC	1 cut(s)	1070
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	7 cut(s)	48, 149, 537, 546, 549, 552, 870
Sau3AI	GATC	5 cut(s)	114, 409, 523, 704, 889
Sau96I	GGNCC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	1109
ScrFI	CCNGG	1 cut(s)	431
SduI	GDGCHC	1 cut(s)	1070
SfaNI	GCATC	2 cut(s)	575, 842
SfuI	TTCGAA	2 cut(s)	331, 679
SinI	GGWCC	1 cut(s)	204
SmiMI	CAYNNNNRTG	5 cut(s)	132, 401, 669, 913, 1110
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	6 cut(s)	270, 304, 333, 462, 487, 596
SsiI	CCGC	4 cut(s)	5, 47, 148, 986
SspMI	CTAG	3 cut(s)	189, 563, 1059
SstI	GAGCTC	1 cut(s)	1070
StyD4I	CCNGG	1 cut(s)	429
TaiI	ACGT	2 cut(s)	215, 606
TaqI	TCGA	3 cut(s)	141, 331, 679
TasI	AATT	6 cut(s)	270, 304, 333, 462, 487, 596
TatI	WGTACW	4 cut(s)	156, 694, 713, 1132
TauI	GCSGC	2 cut(s)	50, 151
TfiI	GAWTC	2 cut(s)	584, 614
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TscAI	CASTG	5 cut(s)	115, 184, 995, 1096, 1135
TseFI	GTSAC	3 cut(s)	388, 992, 1112
TseI	GCWGC	5 cut(s)	536, 545, 548, 551, 869
Tsp45I	GTSAC	3 cut(s)	388, 992, 1112
TspDTI	ATGAA	2 cut(s)	483, 627
TspRI	CASTG	5 cut(s)	115, 184, 995, 1096, 1135
Van91I	CCANNNNNTGG	2 cut(s)	213, 845
VpaK11BI	GGWCC	1 cut(s)	204
VspI	ATTAAT	1 cut(s)	624
XapI	RAATTY	3 cut(s)	304, 333, 596
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	3 cut(s)	189, 563, 1059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.