Rh6BG522600

Predicted integral membrane zinc-ribbon metal-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010402
Physical Location & Seq
Forward (+)
71530880 .. 71534910
4031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG522600.1

Sequence Viewer

Length: 1236 bp
ATGGCGGATGACAAAGGCCTTGAAGGTGACAAGAGCGACGCCCCCGCCTCCGCCGCCGCTACGCCTCCGGCGGTGCCGAAGAAGAATCGCAAGGGATTTTTTTCCAGAATGTTTACCGGCATGTTTCGGCACCGGGACGATTTCGAGAAGCGGCTGCAGTATCTCTCTAAGGAGGAGATTACTGTGGTCAATAGAATCAACAGGAGGGCTCTGACTCGGAGAAGCTTCACCAGAAACGTCATTGCATTCTCTATTTTTTTCGAGGTTATCGCAATTGGTTATGCTATAGCAACCACGAGAACGACTGACTTGGACTGGAGGACGAGGACATTTCGAATTTTGCCAATGTTTTTGTTGCCTGCTTTGTCTTCTTTTACTTATTCAACATTTATGAACTTCACAAGGATGCGTGATCGCAAAGATAATAAGACCCTGGAAAGGCTCCGGGCTGAAAAGCAAGCAAAAATTGATGAACTTAAAGAGAAGACAAACTATTACTCTACTCAACAGCTTATTCAGAAATATGATGCTGACCCAGCAGCAAAGGCAGCTGCTGCAACTGTCCTGGCATCTAAGTTGGGTGCGGATTCAGGCCTAAGATTCCATGTAGGAGATGAATCTAGAGCTAATGCCCCATCTGGGAGAAGCAAGGATGTTGAACTTGTCCAGTCTGGTGAACTTCGAAACCGGAAAACAGGACTCACCAGATCTAATAGTACAGGGAGTACACAATTGCTTTTTTCTGAGGAAGAGACTCCTTGTTCTGTTGGGTCTGAGGGTCCCCAGACTGCTGAGCATGGTCAGCTGGTTGTTGCTCATCAGAATCCTCAAGCATATGCTGCACAAGATGGAAATTGGATTGCTCGTATTGCAGCATTACTTGTGGGTGAGGATCCAACACAATCTTATGCCCTCATATGTGGCAACTGTCATATGCACAATGGGCTTGCTAAGAAGGAGGATTTCGCATACATTACTTATTATTGCCCACACTGTCATGCTCTAAATAGGCCAAAGCATTTGGAAGGGGGTGTTACTGGTTCAGGTTCTCCTGATTCGGGATCTCTGACAGCAGGGGACAGGAGTGATGTAGCAAACCAGGCCAGTGATACTTTGAATGACAGTGTCGTCACAGGTACCAGCTCAGTTGTAGCTGGTCCTGAGATTGAGCAAATAACTGAGAGGCTTGTGTCGGGTGATACAGATACAGTTAGTTTAGAAGAAAAACACGAGTAG

Protein Analysis

411

Amino Acids

45.26

Weight (kDa)

7.15

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_10 PF10058 286 - 336 3.8e-20 ER junction formation factor lunapark, zinc ribbon finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1127
Acc65I GGTACC 1 cut(s) 1136
AccB1I GGYRCC 3 cut(s) 73, 129, 1136
AciI CCGC 8 cut(s) 5, 45, 51, 54, 57, 71, 151, 584
AclWI GGATC 3 cut(s) 887, 900, 1069
AcsI RAATTY 1 cut(s) 336
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 3 cut(s) 718, 727, 1138
AfiI CCNNNNNNNGG 3 cut(s) 438, 639, 1058
AgsI TTSAA 4 cut(s) 23, 384, 659, 1117
AjnI CCWGG 3 cut(s) 432, 564, 1098
AluBI AGCT 7 cut(s) 225, 511, 551, 626, 805, 1143, 1154
AluI AGCT 7 cut(s) 225, 511, 551, 626, 805, 1143, 1154
Alw26I GTCTC 1 cut(s) 746
AlwI GGATC 3 cut(s) 887, 900, 1069
AlwNI CAGNNNCTG 1 cut(s) 554
AoxI GGCC 4 cut(s) 16, 592, 1010, 1101
ApeKI GCWGC 7 cut(s) 154, 539, 548, 551, 554, 839, 872
ApoI RAATTY 1 cut(s) 336
Asp718I GGTACC 1 cut(s) 1136
AspS9I GGNCC 2 cut(s) 779, 1157
AsuC2I CCSGG 2 cut(s) 134, 446
AsuHPI GGTGA 6 cut(s) 38, 220, 686, 694, 899, 1208
AsuII TTCGAA 2 cut(s) 334, 682
AvaII GGWCC 2 cut(s) 779, 1157
BamHI GGATCC 1 cut(s) 892
BanI GGYRCC 3 cut(s) 73, 129, 1136
BanII GRGCYC 1 cut(s) 211
BauI CACGAG 2 cut(s) 295, 1229
BbsI GAAGAC 2 cut(s) 360, 491
BbvI GCAGC 7 cut(s) 141, 538, 541, 551, 560, 826, 884
BccI CCATC 2 cut(s) 643, 842
BciT130I CCWGG 3 cut(s) 434, 566, 1100
BcnI CCSGG 2 cut(s) 134, 446
BcoDI GTCTC 1 cut(s) 746
BfaI CTAG 1 cut(s) 621
BfmI CTRYAG 2 cut(s) 155, 285
BglII AGATCT 1 cut(s) 707
BlpI GCTNAGC 1 cut(s) 792
Bme1390I CCNGG 5 cut(s) 134, 434, 446, 566, 1100
Bme18I GGWCC 2 cut(s) 779, 1157
BmgT120I GGNCC 2 cut(s) 779, 1157
BmiI GGNNCC 7 cut(s) 75, 131, 443, 780, 781, 894, 1138
BmrFI CCNGG 5 cut(s) 134, 434, 446, 566, 1100
BmsI GCATC 3 cut(s) 396, 517, 578
BpiI GAAGAC 2 cut(s) 360, 491
BpmI CTGGAG 1 cut(s) 337
Bpu1102I GCTNAGC 1 cut(s) 792
Bpu14I TTCGAA 2 cut(s) 334, 682
BpuEI CTTGAG 1 cut(s) 813
BpuMI CCSGG 2 cut(s) 134, 446
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 432
BsaWI WCCGGW 1 cut(s) 687
Bsc4I CCNNNNNNNGG 3 cut(s) 438, 639, 1058
Bse118I RCCGGY 1 cut(s) 116
Bse1I ACTGG 4 cut(s) 320, 667, 1042, 1104
Bse3DI GCAATG 1 cut(s) 240
BseBI CCWGG 3 cut(s) 434, 566, 1100
BseDI CCNNGG 1 cut(s) 432
BseGI GGATG 3 cut(s) 13, 411, 658
BseLI CCNNNNNNNGG 3 cut(s) 438, 639, 1058
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 6 cut(s) 735, 765, 783, 1152, 1158, 1170
BseNI ACTGG 4 cut(s) 320, 667, 1042, 1104
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 7 cut(s) 141, 538, 541, 551, 560, 826, 884
BseYI CCCAGC 1 cut(s) 535
BsgI GTGCAG 1 cut(s) 825
BshFI GGCC 4 cut(s) 18, 594, 1012, 1103
BshNI GGYRCC 3 cut(s) 73, 129, 1136
BsiSI CCGG 5 cut(s) 68, 117, 133, 445, 688
BslFI GGGAC 3 cut(s) 149, 765, 1091
BslI CCNNNNNNNGG 3 cut(s) 438, 639, 1058
BsmAI GTCTC 1 cut(s) 746
BsmFI GGGAC 3 cut(s) 149, 765, 1091
BsmI GAATGC 1 cut(s) 245
BsnI GGCC 4 cut(s) 18, 594, 1012, 1103
Bsp119I TTCGAA 2 cut(s) 334, 682
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 4 cut(s) 412, 707, 892, 1061
Bsp1720I GCTNAGC 1 cut(s) 792
BspACI CCGC 8 cut(s) 5, 45, 51, 54, 57, 71, 151, 584
BspANI GGCC 4 cut(s) 18, 594, 1012, 1103
BspCNI CTCAG 6 cut(s) 736, 766, 784, 1153, 1157, 1171
BspLI GGNNCC 7 cut(s) 75, 131, 443, 780, 781, 894, 1138
BspMAI CTGCAG 1 cut(s) 159
BspPI GGATC 3 cut(s) 887, 900, 1069
BspT104I TTCGAA 2 cut(s) 334, 682
BspT107I GGYRCC 3 cut(s) 73, 129, 1136
BsrDI GCAATG 1 cut(s) 240
BsrFI RCCGGY 1 cut(s) 116
BsrI ACTGG 4 cut(s) 320, 667, 1042, 1104
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 432
BssMI GATC 4 cut(s) 412, 707, 892, 1061
BssNI GRCGYC 1 cut(s) 39
BssSI CACGAG 2 cut(s) 295, 1229
Bst2BI CACGAG 2 cut(s) 295, 1229
Bst2UI CCWGG 3 cut(s) 434, 566, 1100
Bst4CI ACNGT 6 cut(s) 184, 562, 929, 995, 1124, 1210
Bst6I CTCTTC 1 cut(s) 744
BstACI GRCGYC 1 cut(s) 39
BstAPI GCANNNNNTGC 2 cut(s) 554, 839
BstBI TTCGAA 2 cut(s) 334, 682
BstC8I GCNNGC 3 cut(s) 360, 459, 948
BstF5I GGATG 3 cut(s) 13, 411, 658
BstKTI GATC 4 cut(s) 415, 710, 895, 1064
BstMAI GTCTC 1 cut(s) 746
BstMBI GATC 4 cut(s) 412, 707, 892, 1061
BstNI CCWGG 3 cut(s) 434, 566, 1100
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 5 cut(s) 132, 432, 444, 564, 1098
BstSFI CTRYAG 2 cut(s) 155, 285
BstV1I GCAGC 7 cut(s) 141, 538, 541, 551, 560, 826, 884
BstV2I GAAGAC 2 cut(s) 360, 491
BstX2I RGATCY 3 cut(s) 707, 892, 1061
BstYI RGATCY 3 cut(s) 707, 892, 1061
BsuRI GGCC 4 cut(s) 18, 594, 1012, 1103
BtsCI GGATG 3 cut(s) 13, 411, 658
BtsIMutI CAGTG 3 cut(s) 991, 1111, 1129
Cac8I GCNNGC 3 cut(s) 360, 459, 948
CaiI CAGNNNCTG 1 cut(s) 554
Cfr10I RCCGGY 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 779, 1157
CseI GACGC 1 cut(s) 47
Csp6I GTAC 3 cut(s) 717, 726, 1137
CviAII CATG 4 cut(s) 121, 605, 797, 998
CviQI GTAC 3 cut(s) 717, 726, 1137
DpnI GATC 4 cut(s) 414, 709, 894, 1063
DpnII GATC 4 cut(s) 412, 707, 892, 1061
DrdI GACNNNNNNGTC 1 cut(s) 1127
DseDI GACNNNNNNGTC 1 cut(s) 1127
Eam1104I CTCTTC 1 cut(s) 744
EarI CTCTTC 1 cut(s) 744
EciI GGCGGA 2 cut(s) 20, 40
Eco147I AGGCCT 2 cut(s) 18, 594
Eco24I GRGCYC 1 cut(s) 211
Eco47I GGWCC 2 cut(s) 779, 1157
EcoO109I RGGNCCY 1 cut(s) 779
EcoRII CCWGG 3 cut(s) 432, 564, 1098
EcoT38I GRGCYC 1 cut(s) 211
FaeI CATG 4 cut(s) 124, 608, 800, 1001
FaqI GGGAC 3 cut(s) 149, 765, 1091
FatI CATG 4 cut(s) 120, 604, 796, 997
FauI CCCGC 1 cut(s) 52
FauNDI CATATG 3 cut(s) 835, 917, 933
FokI GGATG 3 cut(s) 20, 418, 665
FriOI GRGCYC 1 cut(s) 211
FspBI CTAG 1 cut(s) 621
GsaI CCCAGC 1 cut(s) 539
GsuI CTGGAG 1 cut(s) 337
HaeIII GGCC 4 cut(s) 18, 594, 1012, 1103
HapII CCGG 5 cut(s) 68, 117, 133, 445, 688
HgaI GACGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 4 cut(s) 124, 608, 800, 1001
HindIII AAGCTT 1 cut(s) 223
HpaII CCGG 5 cut(s) 68, 117, 133, 445, 688
HphI GGTGA 6 cut(s) 38, 220, 686, 694, 899, 1208
Hpy166II GTNNAC 3 cut(s) 114, 677, 728
Hpy188I TCNGA 7 cut(s) 213, 219, 519, 745, 775, 822, 1068
Hpy188III TCNNGA 6 cut(s) 105, 145, 621, 1052, 1059, 1160
Hpy8I GTNNAC 3 cut(s) 114, 677, 728
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 3 cut(s) 17, 949, 1019
HpyCH4III ACNGT 6 cut(s) 184, 562, 929, 995, 1124, 1210
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 6 cut(s) 157, 245, 557, 842, 872, 937
HpySE526I ACGT 1 cut(s) 237
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 4 cut(s) 124, 608, 800, 1001
KflI GGGWCCC 1 cut(s) 779
KpnI GGTACC 1 cut(s) 1140
Kzo9I GATC 4 cut(s) 412, 707, 892, 1061
LmnI GCTCC 1 cut(s) 447
Lsp1109I GCAGC 7 cut(s) 141, 538, 541, 551, 560, 826, 884
LweI GCATC 3 cut(s) 396, 517, 578
MaeI CTAG 1 cut(s) 621
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 3 cut(s) 26, 1033, 1129
MalI GATC 4 cut(s) 414, 709, 894, 1063
MboI GATC 4 cut(s) 412, 707, 892, 1061
MboII GAAGA 6 cut(s) 91, 94, 360, 496, 761, 1232
MfeI CAATTG 2 cut(s) 273, 731
MflI RGATCY 3 cut(s) 707, 892, 1061
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 5 cut(s) 273, 336, 465, 731, 853
MlyI GAGTC 3 cut(s) 208, 693, 748
MmeI TCCRAC 1 cut(s) 920
MseI TTAA 1 cut(s) 477
MslI CAYNNNNRTG 2 cut(s) 404, 996
MspA1I CMGCKG 2 cut(s) 551, 805
MspI CCGG 5 cut(s) 68, 117, 133, 445, 688
MspR9I CCNGG 5 cut(s) 134, 434, 446, 566, 1100
MunI CAATTG 2 cut(s) 273, 731
Mva1269I GAATGC 1 cut(s) 245
MvaI CCWGG 3 cut(s) 434, 566, 1100
NciI CCSGG 2 cut(s) 134, 446
NdeI CATATG 3 cut(s) 835, 917, 933
NdeII GATC 4 cut(s) 412, 707, 892, 1061
NlaIII CATG 4 cut(s) 124, 608, 800, 1001
NlaIV GGNNCC 7 cut(s) 75, 131, 443, 780, 781, 894, 1138
NmuCI GTSAC 2 cut(s) 26, 1129
NspI RCATGY 1 cut(s) 124
NspV TTCGAA 2 cut(s) 334, 682
PceI AGGCCT 2 cut(s) 18, 594
PctI GAATGC 1 cut(s) 245
PfeI GAWTC 7 cut(s) 85, 195, 587, 600, 617, 823, 1055
PflFI GACNNNGTC 1 cut(s) 1124
PleI GAGTC 3 cut(s) 208, 693, 748
PpsI GAGTC 3 cut(s) 208, 693, 748
PpuMI RGGWCCY 1 cut(s) 779
Psp5II RGGWCCY 1 cut(s) 779
Psp6I CCWGG 3 cut(s) 432, 564, 1098
PspFI CCCAGC 1 cut(s) 535
PspGI CCWGG 3 cut(s) 432, 564, 1098
PspN4I GGNNCC 7 cut(s) 75, 131, 443, 780, 781, 894, 1138
PspPI GGNCC 2 cut(s) 779, 1157
PspPPI RGGWCCY 1 cut(s) 779
PstI CTGCAG 1 cut(s) 159
PstNI CAGNNNCTG 1 cut(s) 554
PsuI RGATCY 3 cut(s) 707, 892, 1061
PsyI GACNNNGTC 1 cut(s) 1124
PvuII CAGCTG 2 cut(s) 551, 805
RsaI GTAC 3 cut(s) 718, 727, 1138
RsaNI GTAC 3 cut(s) 717, 726, 1137
RseI CAYNNNNRTG 2 cut(s) 404, 996
SaqAI TTAA 1 cut(s) 477
Sau3AI GATC 4 cut(s) 412, 707, 892, 1061
Sau96I GGNCC 2 cut(s) 779, 1157
SchI GAGTC 3 cut(s) 208, 693, 748
ScrFI CCNGG 5 cut(s) 134, 434, 446, 566, 1100
SduI GDGCHC 1 cut(s) 211
SfaNI GCATC 3 cut(s) 396, 517, 578
SfcI CTRYAG 2 cut(s) 155, 285
SfuI TTCGAA 2 cut(s) 334, 682
SinI GGWCC 2 cut(s) 779, 1157
SmiMI CAYNNNNRTG 2 cut(s) 404, 996
SmlI CTYRAG 1 cut(s) 828
SmoI CTYRAG 1 cut(s) 828
Sse9I AATT 5 cut(s) 273, 336, 465, 731, 853
SseBI AGGCCT 2 cut(s) 18, 594
SsiI CCGC 8 cut(s) 5, 45, 51, 54, 57, 71, 151, 584
SspMI CTAG 1 cut(s) 621
StuI AGGCCT 2 cut(s) 18, 594
StyD4I CCNGG 5 cut(s) 132, 432, 444, 564, 1098
TaaI ACNGT 6 cut(s) 184, 562, 929, 995, 1124, 1210
TaiI ACGT 1 cut(s) 240
TaqI TCGA 4 cut(s) 144, 261, 334, 682
TasI AATT 5 cut(s) 273, 336, 465, 731, 853
TatI WGTACW 2 cut(s) 716, 725
TauI GCSGC 3 cut(s) 56, 59, 154
TfiI GAWTC 7 cut(s) 85, 195, 587, 600, 617, 823, 1055
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 3 cut(s) 998, 1111, 1129
TseFI GTSAC 2 cut(s) 26, 1129
TseI GCWGC 7 cut(s) 154, 539, 548, 551, 554, 839, 872
Tsp45I GTSAC 2 cut(s) 26, 1129
TspDTI ATGAA 3 cut(s) 407, 486, 630
TspRI CASTG 3 cut(s) 998, 1111, 1129
Tth111I GACNNNGTC 1 cut(s) 1124
VpaK11BI GGWCC 2 cut(s) 779, 1157
XapI RAATTY 1 cut(s) 336
XbaI TCTAGA 1 cut(s) 620
XceI RCATGY 1 cut(s) 124
XspI CTAG 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.