Rw6G044490

Predicted integral membrane zinc-ribbon metal-binding protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
67610123 .. 67613427
3305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G044490.1

Sequence Viewer

Length: 1200 bp
ATGGCGGATGACAAAGGCCTTGAAGGCGACAAGAGCGACGCCCCCGCCGCGGCGGCTACGCCTCCGGCGGTGCCGAAGAAGAATCGCAAGGGATTTTTTTCCAGAATGTTTACCGGCATGTTTCGGCACCGGGACGATTTCGAGAAACGGCTGCAGTATCTCTCTAAGGAGGAGATTACTGTGGTCAATAGAATCAACAGGAGGGCTCTGACTCGGAGAAGCTTCACCAGAAACGTCATTGCATTCTCTATTTTTTTCGAGGTCATCGCAATTGGTTATGCTATAGCAACTACGAGAACGACTGACTTGGACTGGAGGACGAGGACATTTCGAATTTTGCCAATGTTTCTGTTCCCTGCTTTGTCTTCTTTTACTTATTCAACATTTATGAACTTCACAAAGATGCGCGATCGCAAAGATAATAAGACCCTGGAAAGGCTCCGGGCTGAAAAGCAAGCAAAAATTGATGAACTTAAAGAGAAGACAAACTATTACTCTACTCAACAGCTTATTCAGAAATATGATGCTGACCCAGCAGCAAAGGCAGCTGCTGCAACTGTCCTGGCATCTAAGTTGGGTGCGGATTCAGGCCTAAGATTCCATGTAGGAGATGAATCTAGAGCTGATGCCTCATCTGGGAGAAGCAAGGATGTTGAACTTGTCCAGTCTGGTGAACTTCGAAACCGGAAAACAGGACTCACCAGATCTAATAGTACAGGGAGTACACAATTGCTTTTTTCTGAGGAAGAGACTCCTCGTTCTCATGGTCAGCTGGTTGTTGCTCATCAGAATCCTCAAGCATATACTGCACAAGATGGAAATTGGATTGCTCGTATTGCAGCATTACTTGTGGGTGAGGATCCAACACAATCTTATGCCCTCATATGTGGCAACTGTCATATGCACAATGGGCTTGCTAAGAAGGAGGATTTCGCATACATTACATATTATTGCCCACACTGTCATGCTCTAAATAGACCAAAGCATTTGGAAGGGGGTGTTACTGGTTCAGGCTCTCCTGATTCGGGATCTCTGACAGCAGGGGACAGGAGTGATGTAGCAAACCAGGCCAGTGATTCTTTGAATGACAGTGTCGTCACAGGTACCAGCTCAGTTGTAGCTGGTCCTGAGATTGAGCAAATAACTGAGAGGCTTGTGTCGGGTGATACAGATACAGTTAGTTTAGAAGAAAAACACTAG

Protein Analysis

399

Amino Acids

44.15

Weight (kDa)

8.51

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_10 PF10058 275 - 325 3.7e-20 ER junction formation factor lunapark, zinc ribbon finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1094
Acc65I GGTACC 1 cut(s) 1103
AccB1I GGYRCC 3 cut(s) 70, 126, 1103
AccII CGCG 2 cut(s) 50, 408
AciI CCGC 7 cut(s) 5, 45, 48, 50, 53, 68, 581
AclWI GGATC 3 cut(s) 854, 867, 1036
AcsI RAATTY 1 cut(s) 333
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 3 cut(s) 715, 724, 1105
AfiI CCNNNNNNNGG 4 cut(s) 49, 435, 636, 1025
AgsI TTSAA 4 cut(s) 23, 381, 656, 1084
AjnI CCWGG 3 cut(s) 429, 561, 1065
AluBI AGCT 7 cut(s) 222, 508, 548, 623, 772, 1110, 1121
AluI AGCT 7 cut(s) 222, 508, 548, 623, 772, 1110, 1121
Alw26I GTCTC 1 cut(s) 743
AlwI GGATC 3 cut(s) 854, 867, 1036
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 3 cut(s) 16, 589, 1068
ApeKI GCWGC 6 cut(s) 151, 536, 545, 548, 551, 839
ApoI RAATTY 1 cut(s) 333
AsiSI GCGATCGC 1 cut(s) 412
Asp718I GGTACC 1 cut(s) 1103
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 1 cut(s) 1124
AsuC2I CCSGG 2 cut(s) 131, 443
AsuHPI GGTGA 5 cut(s) 217, 683, 691, 866, 1175
AsuII TTCGAA 2 cut(s) 331, 679
AvaII GGWCC 1 cut(s) 1124
BamHI GGATCC 1 cut(s) 859
BanI GGYRCC 3 cut(s) 70, 126, 1103
BanII GRGCYC 1 cut(s) 208
BbsI GAAGAC 2 cut(s) 357, 488
BbvI GCAGC 6 cut(s) 138, 535, 538, 548, 557, 851
BccI CCATC 1 cut(s) 809
BceAI ACGGC 1 cut(s) 164
BciT130I CCWGG 3 cut(s) 431, 563, 1067
BcnI CCSGG 2 cut(s) 131, 443
BcoDI GTCTC 1 cut(s) 743
BfaI CTAG 2 cut(s) 618, 1198
BfmI CTRYAG 2 cut(s) 152, 282
BglI GCCNNNNNGGC 2 cut(s) 24, 53
BglII AGATCT 1 cut(s) 704
BisI GCNGC 9 cut(s) 48, 51, 54, 152, 537, 546, 549, 552, 840
BlsI GCNGC 9 cut(s) 49, 52, 55, 153, 538, 547, 550, 553, 841
Bme1390I CCNGG 5 cut(s) 131, 431, 443, 563, 1067
Bme18I GGWCC 1 cut(s) 1124
BmgT120I GGNCC 1 cut(s) 1124
BmiI GGNNCC 5 cut(s) 72, 128, 440, 861, 1105
BmrFI CCNGG 5 cut(s) 131, 431, 443, 563, 1067
BmsI GCATC 4 cut(s) 393, 514, 575, 616
BpiI GAAGAC 2 cut(s) 357, 488
BpmI CTGGAG 1 cut(s) 334
Bpu14I TTCGAA 2 cut(s) 331, 679
BpuEI CTTGAG 1 cut(s) 780
BpuMI CCSGG 2 cut(s) 131, 443
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 48, 429
BsaWI WCCGGW 1 cut(s) 684
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 435, 636, 1025
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 4 cut(s) 317, 664, 1009, 1071
Bse3DI GCAATG 1 cut(s) 237
BseBI CCWGG 3 cut(s) 431, 563, 1067
BseDI CCNNGG 2 cut(s) 48, 429
BseGI GGATG 2 cut(s) 13, 655
BseLI CCNNNNNNNGG 4 cut(s) 49, 435, 636, 1025
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 4 cut(s) 732, 1119, 1125, 1137
BseNI ACTGG 4 cut(s) 317, 664, 1009, 1071
BseRI GAGGAG 2 cut(s) 185, 744
BseXI GCAGC 6 cut(s) 138, 535, 538, 548, 557, 851
BseYI CCCAGC 1 cut(s) 532
BsgI GTGCAG 1 cut(s) 792
Bsh1236I CGCG 2 cut(s) 50, 408
Bsh1285I CGRYCG 1 cut(s) 412
BshFI GGCC 3 cut(s) 18, 591, 1070
BshNI GGYRCC 3 cut(s) 70, 126, 1103
BsiEI CGRYCG 1 cut(s) 412
BsiSI CCGG 5 cut(s) 65, 114, 130, 442, 685
BslFI GGGAC 2 cut(s) 146, 1058
BslI CCNNNNNNNGG 4 cut(s) 49, 435, 636, 1025
BsmAI GTCTC 1 cut(s) 743
BsmFI GGGAC 2 cut(s) 146, 1058
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 3 cut(s) 18, 591, 1070
Bsp119I TTCGAA 2 cut(s) 331, 679
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 4 cut(s) 409, 704, 859, 1028
BspACI CCGC 7 cut(s) 5, 45, 48, 50, 53, 68, 581
BspANI GGCC 3 cut(s) 18, 591, 1070
BspCNI CTCAG 4 cut(s) 733, 1120, 1124, 1138
BspFNI CGCG 2 cut(s) 50, 408
BspLI GGNNCC 5 cut(s) 72, 128, 440, 861, 1105
BspMAI CTGCAG 1 cut(s) 156
BspPI GGATC 3 cut(s) 854, 867, 1036
BspT104I TTCGAA 2 cut(s) 331, 679
BspT107I GGYRCC 3 cut(s) 70, 126, 1103
BsrDI GCAATG 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 4 cut(s) 317, 664, 1009, 1071
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 48, 429
BssMI GATC 4 cut(s) 409, 704, 859, 1028
BssNI GRCGYC 1 cut(s) 39
Bst2UI CCWGG 3 cut(s) 431, 563, 1067
Bst4CI ACNGT 6 cut(s) 181, 559, 896, 962, 1091, 1177
Bst6I CTCTTC 1 cut(s) 741
BstACI GRCGYC 1 cut(s) 39
BstAPI GCANNNNNTGC 2 cut(s) 551, 806
BstBI TTCGAA 2 cut(s) 331, 679
BstC8I GCNNGC 2 cut(s) 456, 915
BstDEI CTNAG 8 cut(s) 165, 570, 593, 741, 918, 1111, 1128, 1146
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 13, 655
BstFNI CGCG 2 cut(s) 50, 408
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 4 cut(s) 412, 707, 862, 1031
BstMAI GTCTC 1 cut(s) 743
BstMBI GATC 4 cut(s) 409, 704, 859, 1028
BstMCI CGRYCG 1 cut(s) 412
BstNI CCWGG 3 cut(s) 431, 563, 1067
BstNSI RCATGY 1 cut(s) 121
BstSCI CCNGG 5 cut(s) 129, 429, 441, 561, 1065
BstSFI CTRYAG 2 cut(s) 152, 282
BstUI CGCG 2 cut(s) 50, 408
BstV1I GCAGC 6 cut(s) 138, 535, 538, 548, 557, 851
BstV2I GAAGAC 2 cut(s) 357, 488
BstX2I RGATCY 3 cut(s) 704, 859, 1028
BstYI RGATCY 3 cut(s) 704, 859, 1028
BsuRI GGCC 3 cut(s) 18, 591, 1070
BtgI CCRYGG 1 cut(s) 48
BtgZI GCGATG 1 cut(s) 250
BtsCI GGATG 2 cut(s) 13, 655
BtsIMutI CAGTG 3 cut(s) 958, 1078, 1096
Cac8I GCNNGC 2 cut(s) 456, 915
CaiI CAGNNNCTG 1 cut(s) 551
CfoI GCGC 1 cut(s) 408
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 1124
Cfr42I CCGCGG 1 cut(s) 51
CseI GACGC 1 cut(s) 47
Csp6I GTAC 3 cut(s) 714, 723, 1104
CviAII CATG 4 cut(s) 118, 602, 764, 965
CviQI GTAC 3 cut(s) 714, 723, 1104
DdeI CTNAG 8 cut(s) 165, 570, 593, 741, 918, 1111, 1128, 1146
DpnI GATC 4 cut(s) 411, 706, 861, 1030
DpnII GATC 4 cut(s) 409, 704, 859, 1028
DrdI GACNNNNNNGTC 1 cut(s) 1094
DseDI GACNNNNNNGTC 1 cut(s) 1094
Eam1104I CTCTTC 1 cut(s) 741
EarI CTCTTC 1 cut(s) 741
EciI GGCGGA 1 cut(s) 20
Eco147I AGGCCT 2 cut(s) 18, 591
Eco24I GRGCYC 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 1124
EcoRII CCWGG 3 cut(s) 429, 561, 1065
EcoT38I GRGCYC 1 cut(s) 208
FaeI CATG 4 cut(s) 121, 605, 767, 968
FaqI GGGAC 2 cut(s) 146, 1058
FatI CATG 4 cut(s) 117, 601, 763, 964
FauI CCCGC 1 cut(s) 52
FauNDI CATATG 2 cut(s) 884, 900
Fnu4HI GCNGC 9 cut(s) 48, 51, 54, 152, 537, 546, 549, 552, 840
FokI GGATG 2 cut(s) 20, 662
FriOI GRGCYC 1 cut(s) 208
Fsp4HI GCNGC 9 cut(s) 48, 51, 54, 152, 537, 546, 549, 552, 840
FspBI CTAG 2 cut(s) 618, 1198
GlaI GCGC 1 cut(s) 407
GluI GCNGC 9 cut(s) 48, 51, 54, 152, 537, 546, 549, 552, 840
GsaI CCCAGC 1 cut(s) 536
GsuI CTGGAG 1 cut(s) 334
HaeIII GGCC 3 cut(s) 18, 591, 1070
HapII CCGG 5 cut(s) 65, 114, 130, 442, 685
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 408
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 4 cut(s) 121, 605, 767, 968
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 220
HpaII CCGG 5 cut(s) 65, 114, 130, 442, 685
HphI GGTGA 5 cut(s) 217, 683, 691, 866, 1175
Hpy166II GTNNAC 3 cut(s) 111, 674, 725
Hpy188I TCNGA 6 cut(s) 210, 216, 516, 742, 789, 1035
Hpy188III TCNNGA 6 cut(s) 102, 142, 618, 1019, 1026, 1127
Hpy8I GTNNAC 3 cut(s) 111, 674, 725
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 3 cut(s) 17, 916, 986
HpyCH4III ACNGT 6 cut(s) 181, 559, 896, 962, 1091, 1177
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 6 cut(s) 154, 242, 554, 809, 839, 904
HpyF3I CTNAG 8 cut(s) 165, 570, 593, 741, 918, 1111, 1128, 1146
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 4 cut(s) 121, 605, 767, 968
HspAI GCGC 1 cut(s) 406
KpnI GGTACC 1 cut(s) 1107
KspI CCGCGG 1 cut(s) 51
Kzo9I GATC 4 cut(s) 409, 704, 859, 1028
LmnI GCTCC 1 cut(s) 444
Lsp1109I GCAGC 6 cut(s) 138, 535, 538, 548, 557, 851
LweI GCATC 4 cut(s) 393, 514, 575, 616
MaeI CTAG 2 cut(s) 618, 1198
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 2 cut(s) 1000, 1096
MalI GATC 4 cut(s) 411, 706, 861, 1030
MboI GATC 4 cut(s) 409, 704, 859, 1028
MboII GAAGA 6 cut(s) 88, 91, 357, 493, 758, 1199
MfeI CAATTG 2 cut(s) 270, 728
MflI RGATCY 3 cut(s) 704, 859, 1028
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 5 cut(s) 270, 333, 462, 728, 820
MlyI GAGTC 3 cut(s) 205, 690, 745
MmeI TCCRAC 1 cut(s) 887
MseI TTAA 1 cut(s) 474
MslI CAYNNNNRTG 2 cut(s) 401, 963
MspA1I CMGCKG 3 cut(s) 50, 548, 772
MspI CCGG 5 cut(s) 65, 114, 130, 442, 685
MspR9I CCNGG 5 cut(s) 131, 431, 443, 563, 1067
MunI CAATTG 2 cut(s) 270, 728
Mva1269I GAATGC 1 cut(s) 242
MvaI CCWGG 3 cut(s) 431, 563, 1067
MvnI CGCG 2 cut(s) 50, 408
NciI CCSGG 2 cut(s) 131, 443
NdeI CATATG 2 cut(s) 884, 900
NdeII GATC 4 cut(s) 409, 704, 859, 1028
NlaIII CATG 4 cut(s) 121, 605, 767, 968
NlaIV GGNNCC 5 cut(s) 72, 128, 440, 861, 1105
NmuCI GTSAC 1 cut(s) 1096
NspI RCATGY 1 cut(s) 121
NspV TTCGAA 2 cut(s) 331, 679
PceI AGGCCT 2 cut(s) 18, 591
PctI GAATGC 1 cut(s) 242
PfeI GAWTC 8 cut(s) 82, 192, 584, 597, 614, 790, 1022, 1076
PflFI GACNNNGTC 1 cut(s) 1091
PkrI GCNGC 9 cut(s) 49, 52, 55, 153, 538, 547, 550, 553, 841
Ple19I CGATCG 1 cut(s) 412
PleI GAGTC 3 cut(s) 205, 690, 745
PpsI GAGTC 3 cut(s) 205, 690, 745
Psp6I CCWGG 3 cut(s) 429, 561, 1065
PspFI CCCAGC 1 cut(s) 532
PspGI CCWGG 3 cut(s) 429, 561, 1065
PspN4I GGNNCC 5 cut(s) 72, 128, 440, 861, 1105
PspPI GGNCC 1 cut(s) 1124
PstI CTGCAG 1 cut(s) 156
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 3 cut(s) 704, 859, 1028
PsyI GACNNNGTC 1 cut(s) 1091
PvuI CGATCG 1 cut(s) 412
PvuII CAGCTG 2 cut(s) 548, 772
RgaI GCGATCGC 1 cut(s) 412
RsaI GTAC 3 cut(s) 715, 724, 1105
RsaNI GTAC 3 cut(s) 714, 723, 1104
RseI CAYNNNNRTG 2 cut(s) 401, 963
SacII CCGCGG 1 cut(s) 51
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 9 cut(s) 48, 51, 54, 152, 537, 546, 549, 552, 840
Sau3AI GATC 4 cut(s) 409, 704, 859, 1028
Sau96I GGNCC 1 cut(s) 1124
SchI GAGTC 3 cut(s) 205, 690, 745
ScrFI CCNGG 5 cut(s) 131, 431, 443, 563, 1067
SduI GDGCHC 1 cut(s) 208
SfaAI GCGATCGC 1 cut(s) 412
SfaNI GCATC 4 cut(s) 393, 514, 575, 616
SfcI CTRYAG 2 cut(s) 152, 282
Sfr303I CCGCGG 1 cut(s) 51
SfuI TTCGAA 2 cut(s) 331, 679
SgfI GCGATCGC 1 cut(s) 412
SgrBI CCGCGG 1 cut(s) 51
SinI GGWCC 1 cut(s) 1124
SmiMI CAYNNNNRTG 2 cut(s) 401, 963
SmlI CTYRAG 1 cut(s) 795
SmoI CTYRAG 1 cut(s) 795
Sse9I AATT 5 cut(s) 270, 333, 462, 728, 820
SseBI AGGCCT 2 cut(s) 18, 591
SsiI CCGC 7 cut(s) 5, 45, 48, 50, 53, 68, 581
SspMI CTAG 2 cut(s) 618, 1198
StuI AGGCCT 2 cut(s) 18, 591
StyD4I CCNGG 5 cut(s) 129, 429, 441, 561, 1065
TaaI ACNGT 6 cut(s) 181, 559, 896, 962, 1091, 1177
TaiI ACGT 1 cut(s) 237
TaqI TCGA 4 cut(s) 141, 258, 331, 679
TasI AATT 5 cut(s) 270, 333, 462, 728, 820
TatI WGTACW 2 cut(s) 713, 722
TauI GCSGC 3 cut(s) 50, 53, 56
TfiI GAWTC 8 cut(s) 82, 192, 584, 597, 614, 790, 1022, 1076
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 3 cut(s) 965, 1078, 1096
TseFI GTSAC 1 cut(s) 1096
TseI GCWGC 6 cut(s) 151, 536, 545, 548, 551, 839
Tsp45I GTSAC 1 cut(s) 1096
TspDTI ATGAA 3 cut(s) 404, 483, 627
TspRI CASTG 3 cut(s) 965, 1078, 1096
Tth111I GACNNNGTC 1 cut(s) 1091
VpaK11BI GGWCC 1 cut(s) 1124
XapI RAATTY 1 cut(s) 333
XbaI TCTAGA 1 cut(s) 617
XceI RCATGY 1 cut(s) 121
XspI CTAG 2 cut(s) 618, 1198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.