Rh6CG528300

Predicted integral membrane zinc-ribbon metal-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0010402
Physical Location & Seq
Forward (+)
68214795 .. 68215769
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG528300.1

Sequence Viewer

Length: 804 bp
ATGCTGGTTTCTTCGAGTAGTGGTGTACGTTTTTATTCACCTCCAATTTCTTTGGTTGTGCTTACGCCATGTTCTTTTTTTATGCAGAAATATGATGCTGACCCAGCAGCAAAGGCAGCTGCTGCAACTGTCCTGGCATCTAAGTTGGGTGCGGATTCAGGCCTAAGATTCCATGTAGGAGATGAATCTAGAGCTAATGCCCCATCTGGGAGAAGCAAGGATGTTGAACTTGTCCAGTCTGGTGAACTTCGAAACCGGAAAACAGGACTCACCAGATCTAATAGTACAGGGAGTACACAATTGCTTTTTTCTGAGGAAGAGACTCCTTGTTCTGTTGGGTCTGAGGGTCCCCAGACTGCTGAGCATGGTCAGCTGGTTGTTGCTCATCAGAATCCTCAAGCATATGCTGCACAAGATGGAAATTGGATTGCTCGTATTGCAGCATTACTTGTGGGTGAGGATCCAACACAATCTTATGCCCTCATATGTGGCAACTGTCATATGCACAATGGGCTTGCTAAGAAGGAGGATTTCGCATACATTACTTATTATTGCCCACACTGTCATGCTCTAAATAGGCCAAAGCATTTGGAAGGGGGTGTTACTGGTTCAGGTTCTCCTGATTCGGGATCTCTGACAGCAGGGGACAGGAGTGATGTAGCAAACCAGGCCAGTGATACTTTGAATGACAGTGTCGTCACAGGTACCAGCTCAGTTGTAGCTGGTCCTGAGATTGAGCAAATAACTGAGAGGCTTGTGTCGGGTGATACAGATACAGTTAGTTTAGAAGAAAAACACGAGTAG

Protein Analysis

267

Amino Acids

28.15

Weight (kDa)

5.15

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_10 PF10058 142 - 192 2e-20 ER junction formation factor lunapark, zinc ribbon finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 695
Acc65I GGTACC 1 cut(s) 704
AccB1I GGYRCC 1 cut(s) 704
AciI CCGC 1 cut(s) 152
AclWI GGATC 3 cut(s) 455, 468, 637
AfaI GTAC 4 cut(s) 27, 286, 295, 706
AfiI CCNNNNNNNGG 2 cut(s) 207, 626
AgsI TTSAA 2 cut(s) 227, 685
AjnI CCWGG 2 cut(s) 132, 666
AluBI AGCT 5 cut(s) 119, 194, 373, 711, 722
AluI AGCT 5 cut(s) 119, 194, 373, 711, 722
Alw26I GTCTC 1 cut(s) 314
AlwI GGATC 3 cut(s) 455, 468, 637
AlwNI CAGNNNCTG 1 cut(s) 122
AoxI GGCC 3 cut(s) 160, 578, 669
ApeKI GCWGC 6 cut(s) 107, 116, 119, 122, 407, 440
Asp718I GGTACC 1 cut(s) 704
AspS9I GGNCC 2 cut(s) 347, 725
AsuHPI GGTGA 5 cut(s) 30, 254, 262, 467, 776
AsuII TTCGAA 1 cut(s) 250
AvaII GGWCC 2 cut(s) 347, 725
BamHI GGATCC 1 cut(s) 460
BanI GGYRCC 1 cut(s) 704
BauI CACGAG 1 cut(s) 797
BbvI GCAGC 6 cut(s) 106, 109, 119, 128, 394, 452
BccI CCATC 2 cut(s) 211, 410
BciT130I CCWGG 2 cut(s) 134, 668
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 1 cut(s) 189
BglII AGATCT 1 cut(s) 275
BisI GCNGC 6 cut(s) 108, 117, 120, 123, 408, 441
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 6 cut(s) 109, 118, 121, 124, 409, 442
Bme1390I CCNGG 2 cut(s) 134, 668
Bme18I GGWCC 2 cut(s) 347, 725
BmgT120I GGNCC 2 cut(s) 347, 725
BmiI GGNNCC 4 cut(s) 348, 349, 462, 706
BmrFI CCNGG 2 cut(s) 134, 668
BmsI GCATC 2 cut(s) 85, 146
Bpu1102I GCTNAGC 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 250
BpuEI CTTGAG 1 cut(s) 381
BsaWI WCCGGW 1 cut(s) 255
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 626
Bse1I ACTGG 3 cut(s) 235, 610, 672
BseBI CCWGG 2 cut(s) 134, 668
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 207, 626
BseMII CTCAG 6 cut(s) 303, 333, 351, 720, 726, 738
BseNI ACTGG 3 cut(s) 235, 610, 672
BseXI GCAGC 6 cut(s) 106, 109, 119, 128, 394, 452
BseYI CCCAGC 1 cut(s) 103
BsgI GTGCAG 1 cut(s) 393
BshFI GGCC 3 cut(s) 162, 580, 671
BshNI GGYRCC 1 cut(s) 704
BsiSI CCGG 1 cut(s) 256
BslFI GGGAC 2 cut(s) 333, 659
BslI CCNNNNNNNGG 2 cut(s) 207, 626
BsmAI GTCTC 1 cut(s) 314
BsmFI GGGAC 2 cut(s) 333, 659
BsnI GGCC 3 cut(s) 162, 580, 671
Bsp119I TTCGAA 1 cut(s) 250
Bsp143I GATC 3 cut(s) 275, 460, 629
Bsp1720I GCTNAGC 1 cut(s) 360
BspACI CCGC 1 cut(s) 152
BspANI GGCC 3 cut(s) 162, 580, 671
BspCNI CTCAG 6 cut(s) 304, 334, 352, 721, 725, 739
BspLI GGNNCC 4 cut(s) 348, 349, 462, 706
BspPI GGATC 3 cut(s) 455, 468, 637
BspT104I TTCGAA 1 cut(s) 250
BspT107I GGYRCC 1 cut(s) 704
BsrI ACTGG 3 cut(s) 235, 610, 672
BssMI GATC 3 cut(s) 275, 460, 629
BssSI CACGAG 1 cut(s) 797
Bst2BI CACGAG 1 cut(s) 797
Bst2UI CCWGG 2 cut(s) 134, 668
Bst4CI ACNGT 5 cut(s) 130, 497, 563, 692, 778
Bst6I CTCTTC 1 cut(s) 312
BstAPI GCANNNNNTGC 2 cut(s) 122, 407
BstBI TTCGAA 1 cut(s) 250
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 9 cut(s) 141, 164, 312, 342, 360, 519, 712, 729, 747
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 3 cut(s) 278, 463, 632
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 3 cut(s) 275, 460, 629
BstMWI GCNNNNNNNGC 9 cut(s) 104, 113, 116, 122, 370, 407, 437, 511, 668
BstNI CCWGG 2 cut(s) 134, 668
BstSCI CCNGG 2 cut(s) 132, 666
BstV1I GCAGC 6 cut(s) 106, 109, 119, 128, 394, 452
BstX2I RGATCY 3 cut(s) 275, 460, 629
BstYI RGATCY 3 cut(s) 275, 460, 629
BsuRI GGCC 3 cut(s) 162, 580, 671
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 3 cut(s) 559, 679, 697
Cac8I GCNNGC 1 cut(s) 516
CaiI CAGNNNCTG 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 347, 725
Csp6I GTAC 4 cut(s) 26, 285, 294, 705
CviAII CATG 4 cut(s) 69, 173, 365, 566
CviQI GTAC 4 cut(s) 26, 285, 294, 705
DdeI CTNAG 9 cut(s) 141, 164, 312, 342, 360, 519, 712, 729, 747
DpnI GATC 3 cut(s) 277, 462, 631
DpnII GATC 3 cut(s) 275, 460, 629
DrdI GACNNNNNNGTC 1 cut(s) 695
DseDI GACNNNNNNGTC 1 cut(s) 695
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco147I AGGCCT 1 cut(s) 162
Eco47I GGWCC 2 cut(s) 347, 725
EcoO109I RGGNCCY 1 cut(s) 347
EcoRII CCWGG 2 cut(s) 132, 666
FaeI CATG 4 cut(s) 72, 176, 368, 569
FaqI GGGAC 2 cut(s) 333, 659
FatI CATG 4 cut(s) 68, 172, 364, 565
FauNDI CATATG 3 cut(s) 403, 485, 501
Fnu4HI GCNGC 6 cut(s) 108, 117, 120, 123, 408, 441
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 6 cut(s) 108, 117, 120, 123, 408, 441
FspBI CTAG 1 cut(s) 189
GluI GCNGC 6 cut(s) 108, 117, 120, 123, 408, 441
GsaI CCCAGC 1 cut(s) 107
HaeIII GGCC 3 cut(s) 162, 580, 671
HapII CCGG 1 cut(s) 256
Hin1II CATG 4 cut(s) 72, 176, 368, 569
HinfI GANTC 7 cut(s) 155, 168, 185, 267, 322, 391, 623
HpaII CCGG 1 cut(s) 256
HphI GGTGA 5 cut(s) 30, 254, 262, 467, 776
Hpy166II GTNNAC 3 cut(s) 26, 245, 296
Hpy188I TCNGA 4 cut(s) 313, 343, 390, 636
Hpy188III TCNNGA 4 cut(s) 189, 620, 627, 728
Hpy8I GTNNAC 3 cut(s) 26, 245, 296
HpyAV CCTTC 2 cut(s) 517, 587
HpyCH4III ACNGT 5 cut(s) 130, 497, 563, 692, 778
HpyCH4IV ACGT 1 cut(s) 28
HpyCH4V TGCA 5 cut(s) 85, 125, 410, 440, 505
HpyF10VI GCNNNNNNNGC 9 cut(s) 104, 113, 116, 122, 370, 407, 437, 511, 668
HpyF3I CTNAG 9 cut(s) 141, 164, 312, 342, 360, 519, 712, 729, 747
HpySE526I ACGT 1 cut(s) 28
Hsp92II CATG 4 cut(s) 72, 176, 368, 569
KflI GGGWCCC 1 cut(s) 347
KpnI GGTACC 1 cut(s) 708
Kzo9I GATC 3 cut(s) 275, 460, 629
Lsp1109I GCAGC 6 cut(s) 106, 109, 119, 128, 394, 452
LweI GCATC 2 cut(s) 85, 146
MaeI CTAG 1 cut(s) 189
MaeII ACGT 1 cut(s) 28
MaeIII GTNAC 2 cut(s) 601, 697
MalI GATC 3 cut(s) 277, 462, 631
MboI GATC 3 cut(s) 275, 460, 629
MboII GAAGA 3 cut(s) 3, 329, 800
MfeI CAATTG 1 cut(s) 299
MflI RGATCY 3 cut(s) 275, 460, 629
MluCI AATT 3 cut(s) 45, 299, 421
MlyI GAGTC 2 cut(s) 261, 316
MmeI TCCRAC 1 cut(s) 488
MnlI CCTC 8 cut(s) 51, 307, 337, 405, 451, 491, 520, 744
MslI CAYNNNNRTG 1 cut(s) 564
MspA1I CMGCKG 2 cut(s) 119, 373
MspI CCGG 1 cut(s) 256
MspR9I CCNGG 2 cut(s) 134, 668
MunI CAATTG 1 cut(s) 299
MvaI CCWGG 2 cut(s) 134, 668
MwoI GCNNNNNNNGC 9 cut(s) 104, 113, 116, 122, 370, 407, 437, 511, 668
NdeI CATATG 3 cut(s) 403, 485, 501
NdeII GATC 3 cut(s) 275, 460, 629
NlaIII CATG 4 cut(s) 72, 176, 368, 569
NlaIV GGNNCC 4 cut(s) 348, 349, 462, 706
NmuCI GTSAC 1 cut(s) 697
NspV TTCGAA 1 cut(s) 250
PceI AGGCCT 1 cut(s) 162
PfeI GAWTC 5 cut(s) 155, 168, 185, 391, 623
PflFI GACNNNGTC 1 cut(s) 692
PkrI GCNGC 6 cut(s) 109, 118, 121, 124, 409, 442
PleI GAGTC 2 cut(s) 261, 316
PpsI GAGTC 2 cut(s) 261, 316
PpuMI RGGWCCY 1 cut(s) 347
Psp5II RGGWCCY 1 cut(s) 347
Psp6I CCWGG 2 cut(s) 132, 666
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 2 cut(s) 132, 666
PspN4I GGNNCC 4 cut(s) 348, 349, 462, 706
PspPI GGNCC 2 cut(s) 347, 725
PspPPI RGGWCCY 1 cut(s) 347
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 3 cut(s) 275, 460, 629
PsyI GACNNNGTC 1 cut(s) 692
PvuII CAGCTG 2 cut(s) 119, 373
RsaI GTAC 4 cut(s) 27, 286, 295, 706
RsaNI GTAC 4 cut(s) 26, 285, 294, 705
RseI CAYNNNNRTG 1 cut(s) 564
SatI GCNGC 6 cut(s) 108, 117, 120, 123, 408, 441
Sau3AI GATC 3 cut(s) 275, 460, 629
Sau96I GGNCC 2 cut(s) 347, 725
SchI GAGTC 2 cut(s) 261, 316
ScrFI CCNGG 2 cut(s) 134, 668
SetI ASST 9 cut(s) 31, 43, 121, 196, 375, 616, 706, 713, 724
SfaNI GCATC 2 cut(s) 85, 146
SfuI TTCGAA 1 cut(s) 250
SinI GGWCC 2 cut(s) 347, 725
SmiMI CAYNNNNRTG 1 cut(s) 564
SmlI CTYRAG 1 cut(s) 396
SmoI CTYRAG 1 cut(s) 396
Sse9I AATT 3 cut(s) 45, 299, 421
SseBI AGGCCT 1 cut(s) 162
SsiI CCGC 1 cut(s) 152
SspMI CTAG 1 cut(s) 189
StuI AGGCCT 1 cut(s) 162
StyD4I CCNGG 2 cut(s) 132, 666
TaaI ACNGT 5 cut(s) 130, 497, 563, 692, 778
TaiI ACGT 1 cut(s) 31
TaqI TCGA 2 cut(s) 14, 250
TasI AATT 3 cut(s) 45, 299, 421
TatI WGTACW 2 cut(s) 284, 293
TfiI GAWTC 5 cut(s) 155, 168, 185, 391, 623
TscAI CASTG 3 cut(s) 566, 679, 697
TseFI GTSAC 1 cut(s) 697
TseI GCWGC 6 cut(s) 107, 116, 119, 122, 407, 440
Tsp45I GTSAC 1 cut(s) 697
TspDTI ATGAA 1 cut(s) 198
TspRI CASTG 3 cut(s) 566, 679, 697
Tth111I GACNNNGTC 1 cut(s) 692
VpaK11BI GGWCC 2 cut(s) 347, 725
XbaI TCTAGA 1 cut(s) 188
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.