Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010402

Physical Location & Seq

Genomic Coordinates Forward (+)

6567033 .. 6568543

Gene Structure 1511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g10060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTGGGTCCCACTCACTGTGTTATCCGGCCCCGCGTATACGCCCTTTCTGTCCTTCTTTTTCCCTCGACACTCTCACTCCATCGCCCATACTCTCTCTCTCTCTCTCTCTTCATCGATCAGAGCTCTGCGTTGCGTCGCCCTCACGGACTTCTCTTCTTTTGTCGATTTCCATCATTACCCCCTACACCCAGAAAGAAGTTCCATCGATTCAACCTTCTCCCTATCCGCCATCGCCATTTTCAAGAAAGAGATAGAGAATCCGAAAATTGGTGAAATGGCGGAGGATAAAGCCGTCGGAGTAGAAGGCGACAAGAAGGACGCCGCGGCGGCGGCTGCAGCGCCTGCGGTTGCGAAGAAGAAGCGCCAGGGAATCTTGTCCAGAATGTTCAGTGGGATCTTCCGACTACACGGCGACGATTTCGAGAAGCGGCTTCAGCACATTTCGAAAGAGGAAGCCACTGTCCTCGCTAGAATGCAGAGGCGGTCCATTACTTGGAGGCGCATGGCCAGAAATCTCATTCTCTTCTCCGTCTTCTTTGAGGTTATTGCAATTGCTTATGCTATAGTATCGACGAGAGCGACGGATTTAGATTGGAAGATGAGGACATTTCGTATTCTGCCCATGTTTCTTTTGCCTGCTATATCTTCTGTTACTTATTCGGCATTTATGAGCTTCACAAAGATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006996 GO:0007029 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0071782 GO:0071786 GO:0071840 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zinc_ribbon_10

Protein Analysis

231

Amino Acids

25.99

Weight (kDa)

9.94

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31080 AT4G31080
fragaria_vesca	FvH4_2g30651 FvH4_2g30651 FvH4_2g30651
malus_domestica	MD08G1133800.v1.1 MD15G1110400.v1.1
prunus_persica	Prupe.1G462700_v2.0.a1 Prupe.1G462700_v2.0.a1 Prupe.1G462700_v2.0.a1
pyrus_communis	pycom08g11260 pycom15g10060 pycom15g10070
rosa_chinensis	RchiOBHm_Chr6g0312251
rosa_roxburghii	Rroxscaffold_7G00156910
rosa_rugosa	Rorug06G0394400
rosa_samantha	Rh6AG511500 Rh6BG522600 Rh6CG528300 Rh6DG513700
rosa_wichuraiana	Rw6G044490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	495
AccI	GTMKAC	1 cut(s)	38
AccII	CGCG	2 cut(s)	35, 326
AclWI	GGATC	1 cut(s)	404
AcoI	YGGCCR	1 cut(s)	507
AcuI	CTGAAG	1 cut(s)	419
AcyI	GRCGYC	1 cut(s)	321
AfiI	CCNNNNNNNGG	2 cut(s)	269, 495
AgsI	TTSAA	2 cut(s)	213, 244
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	2 cut(s)	125, 675
AluI	AGCT	2 cut(s)	125, 675
Alw21I	GWGCWC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	404
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	2 cut(s)	28, 507
ApeKI	GCWGC	2 cut(s)	335, 338
AspLEI	GCGC	3 cut(s)	343, 366, 504
AspS9I	GGNCC	3 cut(s)	7, 29, 486
AsuHPI	GGTGA	1 cut(s)	284
AsuII	TTCGAA	1 cut(s)	446
AvaII	GGWCC	2 cut(s)	7, 486
BalI	TGGCCA	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	526
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	322, 350
BccI	CCATC	4 cut(s)	89, 180, 212, 239
BceAI	ACGGC	2 cut(s)	278, 427
BciT130I	CCWGG	1 cut(s)	368
BfaI	CTAG	1 cut(s)	471
BfmI	CTRYAG	2 cut(s)	336, 564
BfoI	RGCGCY	2 cut(s)	344, 367
BglI	GCCNNNNNGGC	1 cut(s)	329
BisI	GCNGC	7 cut(s)	324, 327, 330, 333, 336, 339, 431
BlsI	GCNGC	7 cut(s)	325, 328, 331, 334, 337, 340, 432
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	2 cut(s)	7, 486
BmgT120I	GGNCC	3 cut(s)	7, 29, 486
BmiI	GGNNCC	3 cut(s)	8, 9, 31
BmrFI	CCNGG	1 cut(s)	368
BmsI	GCATC	1 cut(s)	675
BpiI	GAAGAC	1 cut(s)	526
Bpu14I	TTCGAA	1 cut(s)	446
Bsa29I	ATCGAT	2 cut(s)	116, 207
BsaBI	GATNNNNATC	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	324, 367
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 495
Bse8I	GATNNNNATC	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	368
BseCI	ATCGAT	2 cut(s)	116, 207
BseDI	CCNNGG	2 cut(s)	324, 367
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	269, 495
BseXI	GCAGC	2 cut(s)	322, 350
Bsh1236I	CGCG	2 cut(s)	35, 326
BshFI	GGCC	2 cut(s)	30, 509
BshVI	ATCGAT	2 cut(s)	116, 207
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	269, 495
BsmI	GAATGC	1 cut(s)	480
BsnI	GGCC	2 cut(s)	30, 509
Bsp119I	TTCGAA	1 cut(s)	446
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	117, 396
BspANI	GGCC	2 cut(s)	30, 509
BspDI	ATCGAT	2 cut(s)	116, 207
BspFNI	CGCG	2 cut(s)	35, 326
BspLI	GGNNCC	3 cut(s)	8, 9, 31
BspMAI	CTGCAG	1 cut(s)	340
BspPI	GGATC	1 cut(s)	404
BspT104I	TTCGAA	1 cut(s)	446
BssECI	CCNNGG	2 cut(s)	324, 367
BssMI	GATC	2 cut(s)	117, 396
BssNAI	GTATAC	1 cut(s)	39
BssNI	GRCGYC	1 cut(s)	321
Bst1107I	GTATAC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	2 cut(s)	19, 463
Bst6I	CTCTTC	3 cut(s)	115, 160, 530
BstACI	GRCGYC	1 cut(s)	321
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstBI	TTCGAA	1 cut(s)	446
BstC8I	GCNNGC	2 cut(s)	345, 639
BstDSI	CCRYGG	1 cut(s)	324
BstFNI	CGCG	2 cut(s)	35, 326
BstH2I	RGCGCY	2 cut(s)	344, 367
BstHHI	GCGC	3 cut(s)	343, 366, 504
BstKTI	GATC	2 cut(s)	120, 399
BstMBI	GATC	2 cut(s)	117, 396
BstMWI	GCNNNNNNNGC	6 cut(s)	329, 332, 335, 338, 344, 436
BstNI	CCWGG	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	2 cut(s)	336, 564
BstUI	CGCG	2 cut(s)	35, 326
BstV1I	GCAGC	2 cut(s)	322, 350
BstV2I	GAAGAC	1 cut(s)	526
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
BstZ17I	GTATAC	1 cut(s)	39
Bsu15I	ATCGAT	2 cut(s)	116, 207
BsuRI	GGCC	2 cut(s)	30, 509
BsuTUI	ATCGAT	2 cut(s)	116, 207
BtgI	CCRYGG	1 cut(s)	324
BtgZI	GCGATG	2 cut(s)	67, 217
BtsIMutI	CAGTG	3 cut(s)	15, 397, 459
Cac8I	GCNNGC	2 cut(s)	345, 639
CaiI	CAGNNNCTG	1 cut(s)	344
CfoI	GCGC	3 cut(s)	343, 366, 504
Cfr13I	GGNCC	3 cut(s)	7, 29, 486
Cfr42I	CCGCGG	1 cut(s)	327
ClaI	ATCGAT	2 cut(s)	116, 207
CseI	GACGC	2 cut(s)	124, 329
CviAII	CATG	2 cut(s)	505, 625
CviJI	RGCY	8 cut(s)	30, 125, 293, 335, 433, 458, 509, 675
CviKI_1	RGCY	8 cut(s)	30, 125, 293, 335, 433, 458, 509, 675
DpnI	GATC	2 cut(s)	119, 398
DpnII	GATC	2 cut(s)	117, 396
EaeI	YGGCCR	1 cut(s)	507
Eam1104I	CTCTTC	3 cut(s)	115, 160, 530
EarI	CTCTTC	3 cut(s)	115, 160, 530
EciI	GGCGGA	2 cut(s)	217, 296
Ecl136II	GAGCTC	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	127
Eco47I	GGWCC	2 cut(s)	7, 486
Eco53kI	GAGCTC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	366
EcoT22I	ATGCAT	1 cut(s)	690
EcoT38I	GRGCYC	1 cut(s)	127
FaeI	CATG	2 cut(s)	508, 628
FaiI	YATR	8 cut(s)	39, 90, 506, 561, 566, 626, 644, 671
FatI	CATG	2 cut(s)	504, 624
FauI	CCCGC	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	7 cut(s)	324, 327, 330, 333, 336, 339, 431
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	7 cut(s)	324, 327, 330, 333, 336, 339, 431
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	3 cut(s)	342, 365, 503
GluI	GCNGC	7 cut(s)	324, 327, 330, 333, 336, 339, 431
HaeII	RGCGCY	2 cut(s)	344, 367
HaeIII	GGCC	2 cut(s)	30, 509
HapII	CCGG	1 cut(s)	27
HgaI	GACGC	2 cut(s)	124, 329
HhaI	GCGC	3 cut(s)	343, 366, 504
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	2 cut(s)	508, 628
Hin6I	GCGC	3 cut(s)	341, 364, 502
HinP1I	GCGC	3 cut(s)	341, 364, 502
HinfI	GANTC	3 cut(s)	209, 259, 372
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	4 cut(s)	122, 264, 299, 404
Hpy188III	TCNNGA	3 cut(s)	244, 381, 424
Hpy8I	GTNNAC	1 cut(s)	39
Hpy99I	CGWCG	5 cut(s)	140, 299, 419, 577, 586
HpyAV	CCTTC	4 cut(s)	64, 226, 299, 310
HpyCH4III	ACNGT	2 cut(s)	19, 463
HpyCH4V	TGCA	4 cut(s)	338, 478, 551, 688
HpyF10VI	GCNNNNNNNGC	6 cut(s)	329, 332, 335, 338, 344, 436
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	2 cut(s)	508, 628
HspAI	GCGC	3 cut(s)	341, 364, 502
KflI	GGGWCCC	1 cut(s)	7
KspI	CCGCGG	1 cut(s)	327
Kzo9I	GATC	2 cut(s)	117, 396
LpnPI	CCDG	8 cut(s)	40, 204, 353, 357, 380, 394, 523, 651
Lsp1109I	GCAGC	2 cut(s)	322, 350
LweI	GCATC	1 cut(s)	675
MaeI	CTAG	1 cut(s)	471
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	2 cut(s)	119, 398
MboI	GATC	2 cut(s)	117, 396
MboII	GAAGA	9 cut(s)	102, 147, 367, 370, 391, 517, 526, 610, 639
MfeI	CAATTG	1 cut(s)	552
MflI	RGATCY	1 cut(s)	396
MhlI	GDGCHC	1 cut(s)	127
MlsI	TGGCCA	1 cut(s)	509
MluCI	AATT	2 cut(s)	267, 552
MluNI	TGGCCA	1 cut(s)	509
MmeI	TCCRAC	2 cut(s)	277, 427
MnlI	CCTC	9 cut(s)	75, 152, 277, 445, 474, 476, 492, 535, 597
Mox20I	TGGCCA	1 cut(s)	509
Mph1103I	ATGCAT	1 cut(s)	690
MscI	TGGCCA	1 cut(s)	509
MslI	CAYNNNNRTG	1 cut(s)	683
Msp20I	TGGCCA	1 cut(s)	509
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	368
MunI	CAATTG	1 cut(s)	552
Mva1269I	GAATGC	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	368
MvnI	CGCG	2 cut(s)	35, 326
MwoI	GCNNNNNNNGC	6 cut(s)	329, 332, 335, 338, 344, 436
NdeII	GATC	2 cut(s)	117, 396
NlaIII	CATG	2 cut(s)	508, 628
NlaIV	GGNNCC	3 cut(s)	8, 9, 31
NsiI	ATGCAT	1 cut(s)	690
NspV	TTCGAA	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	578
PctI	GAATGC	1 cut(s)	480
PfeI	GAWTC	3 cut(s)	209, 259, 372
PflMI	CCANNNNNTGG	1 cut(s)	495
PkrI	GCNGC	7 cut(s)	325, 328, 331, 334, 337, 340, 432
PpuMI	RGGWCCY	1 cut(s)	7
Psp124BI	GAGCTC	1 cut(s)	127
Psp5II	RGGWCCY	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	3 cut(s)	8, 9, 31
PspPI	GGNCC	3 cut(s)	7, 29, 486
PspPPI	RGGWCCY	1 cut(s)	7
PstI	CTGCAG	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	396
RseI	CAYNNNNRTG	1 cut(s)	683
SacI	GAGCTC	1 cut(s)	127
SacII	CCGCGG	1 cut(s)	327
SatI	GCNGC	7 cut(s)	324, 327, 330, 333, 336, 339, 431
Sau3AI	GATC	2 cut(s)	117, 396
Sau96I	GGNCC	3 cut(s)	7, 29, 486
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	4 cut(s)	127, 218, 546, 677
SfaNI	GCATC	1 cut(s)	675
SfcI	CTRYAG	2 cut(s)	336, 564
Sfr303I	CCGCGG	1 cut(s)	327
SfuI	TTCGAA	1 cut(s)	446
SgrBI	CCGCGG	1 cut(s)	327
SinI	GGWCC	2 cut(s)	7, 486
SmiMI	CAYNNNNRTG	1 cut(s)	683
Sse9I	AATT	2 cut(s)	267, 552
SspMI	CTAG	1 cut(s)	471
SstI	GAGCTC	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	19, 463
TaqI	TCGA	7 cut(s)	67, 116, 165, 207, 423, 446, 572
TasI	AATT	2 cut(s)	267, 552
TauI	GCSGC	5 cut(s)	326, 329, 332, 335, 433
TfiI	GAWTC	3 cut(s)	209, 259, 372
TscAI	CASTG	3 cut(s)	22, 397, 466
TseI	GCWGC	2 cut(s)	335, 338
TspDTI	ATGAA	1 cut(s)	102
TspGWI	ACGGA	3 cut(s)	161, 520, 599
TspRI	CASTG	3 cut(s)	22, 397, 466
Van91I	CCANNNNNTGG	1 cut(s)	495
VpaK11BI	GGWCC	2 cut(s)	7, 486
XmiI	GTMKAC	1 cut(s)	38
XspI	CTAG	1 cut(s)	471
Zsp2I	ATGCAT	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.