Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010402

Physical Location & Seq

Genomic Coordinates Forward (+)

6569306 .. 6570284

Gene Structure 979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g10070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTACCATGGTTGTCTTTATCTGTTGTCTTCGTATATGCTTCAGTTATGTTCTTTTATGCAGAGATATGATCCTGACCCAGCAGCAAAGGCAGCTGCTGCAACTGTCCTGGCATCAAAGCTGGGTACTGATTCAGGCTTGAAGTTTTATGTGGGAGATGAAACTAAGGGTAATGTCTCAACAGGGAAAAGCCATGATGCTGAACTTGTCCATTCTGGTGAACTTCGAAACCGTAAACCAGTACACACCAGATCTAATAGTACAGGGAGTGTTCCACTGAATCCTCTTGAAGAAGAGACACCTCGTTCTGCAAGGTCCGACGGTGCTCAGACTTCTGAGTATAATCAGCTAGTTGTTAGTCATCATAATCCTCAAGGATCGATCGCGCGATCTCCACAGGATGGAGGATGGATTGCTCGGATTGCAGCATTACTTGTGGGTGAGGATCCAACAGAGTCTTATGCGCTCATATGTGGCAACTGTCATATGCACAATGGGCTTGCTAAGAAGGAAGATTTCCCTTACATCACTTATTTTTGCCCGCACTGTCACGCCTTAAATCAGCCAAAACATCTGGAAGGGAGTACTTCTGGTTCTAACACCCCTAGTTTGGGCAATTTGGGAACAGGGGTCATCAGTGAGCCGACAAAGCAAGCAAGTGATTCTCTGGATGACAGTGTAGTCACTAGTACCAGCCCGGTCAAAGCTGGTTCAGAGATTGAGGAAGTAACCGAAAGGCCTGCATTGGCCGATACAGTTCGTTTAGAAAAACATGAGCAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006996 GO:0007029 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0071782 GO:0071786 GO:0071840 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zinc_ribbon_10

Protein Analysis

262

Amino Acids

28.02

Weight (kDa)

5.71

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_10	PF10058	137 - 187	1.5e-19	ER junction formation factor lunapark, zinc ribbon finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31080 AT4G31080
fragaria_vesca	FvH4_2g30651 FvH4_2g30651 FvH4_2g30651
malus_domestica	MD08G1133800.v1.1 MD15G1110400.v1.1
prunus_persica	Prupe.1G462700_v2.0.a1 Prupe.1G462700_v2.0.a1 Prupe.1G462700_v2.0.a1
pyrus_communis	pycom08g11260 pycom15g10060 pycom15g10070
rosa_chinensis	RchiOBHm_Chr6g0312251
rosa_roxburghii	Rroxscaffold_7G00156910
rosa_rugosa	Rorug06G0394400
rosa_samantha	Rh6AG511500 Rh6BG522600 Rh6CG528300 Rh6DG513700
rosa_wichuraiana	Rw6G044490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	680
AccB7I	CCANNNNNTGG	1 cut(s)	401
AccII	CGCG	2 cut(s)	386, 388
AciI	CCGC	1 cut(s)	542
AclWI	GGATC	4 cut(s)	65, 385, 440, 453
AcoI	YGGCCR	1 cut(s)	747
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	6 cut(s)	5, 127, 243, 262, 586, 691
AfiI	CCNNNNNNNGG	3 cut(s)	401, 610, 611
AgsI	TTSAA	2 cut(s)	142, 290
AhlI	ACTAGT	1 cut(s)	686
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	4 cut(s)	95, 121, 349, 707
AluI	AGCT	4 cut(s)	95, 121, 349, 707
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	2 cut(s)	181, 290
AlwI	GGATC	4 cut(s)	65, 385, 440, 453
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	2 cut(s)	737, 747
ApeKI	GCWGC	5 cut(s)	83, 92, 95, 98, 425
AspLEI	GCGC	2 cut(s)	388, 466
AspS9I	GGNCC	1 cut(s)	315
AsuC2I	CCSGG	1 cut(s)	698
AsuHPI	GGTGA	2 cut(s)	230, 452
AsuII	TTCGAA	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	315
BamHI	GGATCC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	5 cut(s)	82, 85, 95, 104, 437
BccI	CCATC	2 cut(s)	395, 402
BcgI	CGANNNNNNTGC	2 cut(s)	722, 756
BciT130I	CCWGG	1 cut(s)	110
BcnI	CCSGG	1 cut(s)	698
BcoDI	GTCTC	2 cut(s)	181, 290
BcuI	ACTAGT	1 cut(s)	686
BfaI	CTAG	3 cut(s)	350, 606, 687
BglII	AGATCT	1 cut(s)	251
BisI	GCNGC	5 cut(s)	84, 93, 96, 99, 426
BlsI	GCNGC	5 cut(s)	85, 94, 97, 100, 427
BmcAI	AGTACT	1 cut(s)	586
Bme1390I	CCNGG	2 cut(s)	110, 698
Bme18I	GGWCC	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	315
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	2 cut(s)	110, 698
BmsI	GCATC	2 cut(s)	122, 187
BpiI	GAAGAC	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	226
BpuEI	CTTGAG	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	698
Bsa29I	ATCGAT	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	3 cut(s)	401, 610, 611
Bse1I	ACTGG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	7
BseGI	GGATG	3 cut(s)	406, 413, 676
BseLI	CCNNNNNNNGG	3 cut(s)	401, 610, 611
BseMII	CTCAG	2 cut(s)	327, 341
BseNI	ACTGG	1 cut(s)	239
BseXI	GCAGC	5 cut(s)	82, 85, 95, 104, 437
BseYI	CCCAGC	2 cut(s)	79, 121
Bsh1236I	CGCG	2 cut(s)	386, 388
Bsh1285I	CGRYCG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	739, 749
BshVI	ATCGAT	1 cut(s)	380
BsiEI	CGRYCG	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	698
BslI	CCNNNNNNNGG	3 cut(s)	401, 610, 611
BsmAI	GTCTC	2 cut(s)	181, 290
BsnI	GGCC	2 cut(s)	739, 749
Bsp119I	TTCGAA	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	6 cut(s)	70, 251, 377, 381, 389, 445
Bsp19I	CCATGG	1 cut(s)	7
BspACI	CCGC	1 cut(s)	542
BspANI	GGCC	2 cut(s)	739, 749
BspCNI	CTCAG	2 cut(s)	328, 340
BspDI	ATCGAT	1 cut(s)	380
BspFNI	CGCG	2 cut(s)	386, 388
BspLI	GGNNCC	1 cut(s)	447
BspPI	GGATC	4 cut(s)	65, 385, 440, 453
BspT104I	TTCGAA	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	6 cut(s)	70, 251, 377, 381, 389, 445
BssT1I	CCWWGG	1 cut(s)	7
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	7 cut(s)	106, 233, 323, 482, 548, 677, 757
Bst6I	CTCTTC	1 cut(s)	288
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstBI	TTCGAA	1 cut(s)	226
BstC8I	GCNNGC	4 cut(s)	501, 542, 654, 741
BstDEI	CTNAG	4 cut(s)	165, 327, 336, 504
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	3 cut(s)	406, 413, 676
BstFNI	CGCG	2 cut(s)	386, 388
BstHHI	GCGC	2 cut(s)	388, 466
BstKTI	GATC	6 cut(s)	73, 254, 380, 384, 392, 448
BstMAI	GTCTC	2 cut(s)	181, 290
BstMBI	GATC	6 cut(s)	70, 251, 377, 381, 389, 445
BstMCI	CGRYCG	1 cut(s)	384
BstMWI	GCNNNNNNNGC	6 cut(s)	89, 92, 98, 422, 496, 649
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	2 cut(s)	108, 696
BstUI	CGCG	2 cut(s)	386, 388
BstV1I	GCAGC	5 cut(s)	82, 85, 95, 104, 437
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	2 cut(s)	251, 445
BstYI	RGATCY	2 cut(s)	251, 445
Bsu15I	ATCGAT	1 cut(s)	380
BsuRI	GGCC	2 cut(s)	739, 749
BsuTUI	ATCGAT	1 cut(s)	380
BtgI	CCRYGG	1 cut(s)	7
BtsCI	GGATG	3 cut(s)	406, 413, 676
BtsIMutI	CAGTG	4 cut(s)	275, 544, 643, 682
Cac8I	GCNNGC	4 cut(s)	501, 542, 654, 741
CaiI	CAGNNNCTG	1 cut(s)	98
CfoI	GCGC	2 cut(s)	388, 466
Cfr13I	GGNCC	1 cut(s)	315
ClaI	ATCGAT	1 cut(s)	380
Csp6I	GTAC	6 cut(s)	4, 126, 242, 261, 585, 690
CviAII	CATG	3 cut(s)	8, 194, 773
CviQI	GTAC	6 cut(s)	4, 126, 242, 261, 585, 690
DdeI	CTNAG	4 cut(s)	165, 327, 336, 504
DpnI	GATC	6 cut(s)	72, 253, 379, 383, 391, 447
DpnII	GATC	6 cut(s)	70, 251, 377, 381, 389, 445
DrdI	GACNNNNNNGTC	1 cut(s)	680
DseDI	GACNNNNNNGTC	1 cut(s)	680
EaeI	YGGCCR	1 cut(s)	747
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	7
Eco147I	AGGCCT	1 cut(s)	739
Eco47I	GGWCC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	7
ErhI	CCWWGG	1 cut(s)	7
FaeI	CATG	3 cut(s)	11, 197, 776
FatI	CATG	3 cut(s)	7, 193, 772
FauI	CCCGC	1 cut(s)	549
FauNDI	CATATG	2 cut(s)	470, 486
Fnu4HI	GCNGC	5 cut(s)	84, 93, 96, 99, 426
FokI	GGATG	3 cut(s)	413, 420, 683
Fsp4HI	GCNGC	5 cut(s)	84, 93, 96, 99, 426
FspBI	CTAG	3 cut(s)	350, 606, 687
GlaI	GCGC	2 cut(s)	387, 465
GluI	GCNGC	5 cut(s)	84, 93, 96, 99, 426
GsaI	CCCAGC	2 cut(s)	83, 125
HaeIII	GGCC	2 cut(s)	739, 749
HapII	CCGG	1 cut(s)	698
HhaI	GCGC	2 cut(s)	388, 466
Hin1II	CATG	3 cut(s)	11, 197, 776
Hin6I	GCGC	2 cut(s)	386, 464
HinP1I	GCGC	2 cut(s)	386, 464
HinfI	GANTC	4 cut(s)	131, 280, 455, 662
HpaII	CCGG	1 cut(s)	698
HphI	GGTGA	2 cut(s)	230, 452
Hpy166II	GTNNAC	3 cut(s)	221, 236, 244
Hpy188I	TCNGA	5 cut(s)	319, 330, 337, 420, 715
Hpy188III	TCNNGA	4 cut(s)	74, 287, 575, 668
Hpy8I	GTNNAC	3 cut(s)	221, 236, 244
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	2 cut(s)	502, 572
HpyCH4III	ACNGT	7 cut(s)	106, 233, 323, 482, 548, 677, 757
HpyCH4V	TGCA	6 cut(s)	61, 101, 311, 425, 490, 743
HpyF10VI	GCNNNNNNNGC	6 cut(s)	89, 92, 98, 422, 496, 649
HpyF3I	CTNAG	4 cut(s)	165, 327, 336, 504
Hsp92II	CATG	3 cut(s)	11, 197, 776
HspAI	GCGC	2 cut(s)	386, 464
Kzo9I	GATC	6 cut(s)	70, 251, 377, 381, 389, 445
Lsp1109I	GCAGC	5 cut(s)	82, 85, 95, 104, 437
LweI	GCATC	2 cut(s)	122, 187
MaeI	CTAG	3 cut(s)	350, 606, 687
MaeIII	GTNAC	3 cut(s)	548, 682, 727
MalI	GATC	6 cut(s)	72, 253, 379, 383, 391, 447
MboI	GATC	6 cut(s)	70, 251, 377, 381, 389, 445
MboII	GAAGA	4 cut(s)	21, 302, 305, 524
MflI	RGATCY	2 cut(s)	251, 445
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	1 cut(s)	616
MlyI	GAGTC	1 cut(s)	464
MmeI	TCCRAC	2 cut(s)	342, 473
MnlI	CCTC	6 cut(s)	294, 312, 381, 398, 436, 715
MseI	TTAA	2 cut(s)	557, 784
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	1 cut(s)	698
MspR9I	CCNGG	2 cut(s)	110, 698
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	2 cut(s)	386, 388
MwoI	GCNNNNNNNGC	6 cut(s)	89, 92, 98, 422, 496, 649
NciI	CCSGG	1 cut(s)	698
NcoI	CCATGG	1 cut(s)	7
NdeI	CATATG	2 cut(s)	470, 486
NdeII	GATC	6 cut(s)	70, 251, 377, 381, 389, 445
NlaIII	CATG	3 cut(s)	11, 197, 776
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	2 cut(s)	548, 682
NspV	TTCGAA	1 cut(s)	226
PceI	AGGCCT	1 cut(s)	739
PfeI	GAWTC	3 cut(s)	131, 280, 662
PflMI	CCANNNNNTGG	1 cut(s)	401
PkrI	GCNGC	5 cut(s)	85, 94, 97, 100, 427
Ple19I	CGATCG	1 cut(s)	384
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	108
PspFI	CCCAGC	2 cut(s)	79, 121
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	1 cut(s)	315
PsrI	GAACNNNNNNTAC	2 cut(s)	577, 609
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	251, 445
PvuI	CGATCG	1 cut(s)	384
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	6 cut(s)	5, 127, 243, 262, 586, 691
RsaNI	GTAC	6 cut(s)	4, 126, 242, 261, 585, 690
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	557, 784
SatI	GCNGC	5 cut(s)	84, 93, 96, 99, 426
Sau3AI	GATC	6 cut(s)	70, 251, 377, 381, 389, 445
Sau96I	GGNCC	1 cut(s)	315
ScaI	AGTACT	1 cut(s)	586
SchI	GAGTC	1 cut(s)	464
ScrFI	CCNGG	2 cut(s)	110, 698
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	6 cut(s)	97, 123, 304, 317, 351, 709
SfaNI	GCATC	2 cut(s)	122, 187
SfuI	TTCGAA	1 cut(s)	226
SinI	GGWCC	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
SpeI	ACTAGT	1 cut(s)	686
Sse9I	AATT	1 cut(s)	616
SseBI	AGGCCT	1 cut(s)	739
SsiI	CCGC	1 cut(s)	542
SspMI	CTAG	3 cut(s)	350, 606, 687
StuI	AGGCCT	1 cut(s)	739
StyD4I	CCNGG	2 cut(s)	108, 696
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	7 cut(s)	106, 233, 323, 482, 548, 677, 757
TaqI	TCGA	2 cut(s)	226, 380
TasI	AATT	1 cut(s)	616
TatI	WGTACW	3 cut(s)	241, 260, 584
TfiI	GAWTC	3 cut(s)	131, 280, 662
Tru1I	TTAA	2 cut(s)	557, 784
Tru9I	TTAA	2 cut(s)	557, 784
TscAI	CASTG	4 cut(s)	282, 551, 643, 682
TseFI	GTSAC	2 cut(s)	548, 682
TseI	GCWGC	5 cut(s)	83, 92, 95, 98, 425
Tsp45I	GTSAC	2 cut(s)	548, 682
TspDTI	ATGAA	1 cut(s)	174
TspRI	CASTG	4 cut(s)	282, 551, 643, 682
Van91I	CCANNNNNTGG	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	315
XspI	CTAG	3 cut(s)	350, 606, 687
ZrmI	AGTACT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.