Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010402

Physical Location & Seq

Genomic Coordinates Forward (+)

68200447 .. 68203752

Gene Structure 3306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG511500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCGGATGACAAAGGCCTTGAAGGCGACAAGAGCGACGCCCCCGCCGCCGCCGCTACGCCTCCGGCGGTGCCGAAGAAGAATCGCAAGGGATTTTTTTCCAGAATGTTTACCGGCATGTTTCGGCACCGGGACGATTTCGAGAAACGGCTGCAGTATCTCTCTAAGGAGGAGATTACTGTGGTCAATAGAATCAACAGGAGGGCTCTGACTCGGAGAAGCTTCACCAGAAACGTCATTGCATTCTCTATTTTTTTCGAGGTCATCGCAATTGGTTATGCTATAGCAACTACGAGAACGACTGACTTGGACTGGAGGACGAGGACATTTCGAATTTTGCCAATGTTTCTGTTGCCTGCTTTGTCTTCTTTTACTTATTCAACATTTATGAACTTCACAAAGATGCGGCTTGCTAAGAAGGAGGATTTCGCATACATTACATATTATTGCCCACACTGTCATGCTTTAAATAGACCAAAGCATTTGGAAGGGGGTGTTACTGGTTCAGGCTCTCCTGATTCGGGATCTCTGACAGCAGGGGACAGGAGTGATGTAGCAAACCAGGCCAGTGATTCTTTGAATGACAGTGTCGTCACAGGTACCAGCTCAGTTGTAGCTGGTCCTGAGATTGAGCAAATAACTGAGAGGCTTGTGTCGGGTGATACAGATACAGTTAGTTTAGAAGAAAAACACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006996 GO:0007029 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0071782 GO:0071786 GO:0071840 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zinc_ribbon_10

Protein Analysis

232

Amino Acids

25.89

Weight (kDa)

8.5

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010402)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31080 AT4G31080
fragaria_vesca	FvH4_2g30651 FvH4_2g30651 FvH4_2g30651
malus_domestica	MD08G1133800.v1.1 MD15G1110400.v1.1
prunus_persica	Prupe.1G462700_v2.0.a1 Prupe.1G462700_v2.0.a1 Prupe.1G462700_v2.0.a1
pyrus_communis	pycom08g11260 pycom15g10060 pycom15g10070
rosa_chinensis	RchiOBHm_Chr6g0312251
rosa_roxburghii	Rroxscaffold_7G00156910
rosa_rugosa	Rorug06G0394400
rosa_samantha	Rh6AG511500 Rh6BG522600 Rh6CG528300 Rh6DG513700
rosa_wichuraiana	Rw6G044490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	590
Acc65I	GGTACC	1 cut(s)	599
AccB1I	GGYRCC	3 cut(s)	70, 126, 599
AciI	CCGC	7 cut(s)	5, 45, 48, 51, 54, 68, 406
AclWI	GGATC	1 cut(s)	532
AcsI	RAATTY	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	601
AfiI	CCNNNNNNNGG	1 cut(s)	521
AgsI	TTSAA	3 cut(s)	23, 381, 580
AjnI	CCWGG	1 cut(s)	561
AluBI	AGCT	3 cut(s)	222, 606, 617
AluI	AGCT	3 cut(s)	222, 606, 617
AlwI	GGATC	1 cut(s)	532
AoxI	GGCC	2 cut(s)	16, 564
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	333
Asp718I	GGTACC	1 cut(s)	599
AspS9I	GGNCC	1 cut(s)	620
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	217, 671
AsuII	TTCGAA	1 cut(s)	331
AvaII	GGWCC	1 cut(s)	620
BanI	GGYRCC	3 cut(s)	70, 126, 599
BanII	GRGCYC	1 cut(s)	208
BauI	CACGAG	1 cut(s)	692
BbsI	GAAGAC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	138
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	563
BcnI	CCSGG	1 cut(s)	131
BfmI	CTRYAG	2 cut(s)	152, 282
BglI	GCCNNNNNGGC	1 cut(s)	24
BisI	GCNGC	5 cut(s)	48, 51, 54, 152, 407
BlsI	GCNGC	5 cut(s)	49, 52, 55, 153, 408
Bme1390I	CCNGG	2 cut(s)	131, 563
Bme18I	GGWCC	1 cut(s)	620
BmgT120I	GGNCC	1 cut(s)	620
BmiI	GGNNCC	3 cut(s)	72, 128, 601
BmrFI	CCNGG	2 cut(s)	131, 563
BmsI	GCATC	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	357
BpmI	CTGGAG	1 cut(s)	334
Bpu14I	TTCGAA	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	521
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	3 cut(s)	317, 505, 567
Bse3DI	GCAATG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	563
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	521
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	3 cut(s)	615, 621, 633
BseNI	ACTGG	3 cut(s)	317, 505, 567
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	138
BshFI	GGCC	2 cut(s)	18, 566
BshNI	GGYRCC	3 cut(s)	70, 126, 599
BsiSI	CCGG	3 cut(s)	65, 114, 130
BslFI	GGGAC	2 cut(s)	146, 554
BslI	CCNNNNNNNGG	1 cut(s)	521
BsmFI	GGGAC	2 cut(s)	146, 554
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	2 cut(s)	18, 566
Bsp119I	TTCGAA	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	524
BspACI	CCGC	7 cut(s)	5, 45, 48, 51, 54, 68, 406
BspANI	GGCC	2 cut(s)	18, 566
BspCNI	CTCAG	3 cut(s)	616, 620, 634
BspLI	GGNNCC	3 cut(s)	72, 128, 601
BspMAI	CTGCAG	1 cut(s)	156
BspPI	GGATC	1 cut(s)	532
BspT104I	TTCGAA	1 cut(s)	331
BspT107I	GGYRCC	3 cut(s)	70, 126, 599
BsrDI	GCAATG	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	3 cut(s)	317, 505, 567
BssAI	RCCGGY	1 cut(s)	113
BssMI	GATC	1 cut(s)	524
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	692
Bst2BI	CACGAG	1 cut(s)	692
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	4 cut(s)	181, 458, 587, 673
BstACI	GRCGYC	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	331
BstC8I	GCNNGC	2 cut(s)	357, 411
BstDEI	CTNAG	5 cut(s)	165, 414, 607, 624, 642
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	1 cut(s)	527
BstMBI	GATC	1 cut(s)	524
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 33, 47, 53, 563
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	2 cut(s)	129, 561
BstSFI	CTRYAG	2 cut(s)	152, 282
BstV1I	GCAGC	1 cut(s)	138
BstV2I	GAAGAC	1 cut(s)	357
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
BsuRI	GGCC	2 cut(s)	18, 566
BtgZI	GCGATG	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	13
BtsIMutI	CAGTG	3 cut(s)	454, 574, 592
Cac8I	GCNNGC	2 cut(s)	357, 411
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	620
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	600
CviAII	CATG	2 cut(s)	118, 461
CviQI	GTAC	1 cut(s)	600
DdeI	CTNAG	5 cut(s)	165, 414, 607, 624, 642
DpnI	GATC	1 cut(s)	526
DpnII	GATC	1 cut(s)	524
DraI	TTTAAA	1 cut(s)	468
DrdI	GACNNNNNNGTC	1 cut(s)	590
DseDI	GACNNNNNNGTC	1 cut(s)	590
EciI	GGCGGA	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	561
EcoT38I	GRGCYC	1 cut(s)	208
FaeI	CATG	2 cut(s)	121, 464
FaiI	YATR	7 cut(s)	119, 279, 284, 389, 433, 442, 462
FaqI	GGGAC	2 cut(s)	146, 554
FatI	CATG	2 cut(s)	117, 460
FauI	CCCGC	1 cut(s)	52
Fnu4HI	GCNGC	5 cut(s)	48, 51, 54, 152, 407
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	5 cut(s)	48, 51, 54, 152, 407
GluI	GCNGC	5 cut(s)	48, 51, 54, 152, 407
GsuI	CTGGAG	1 cut(s)	334
HaeIII	GGCC	2 cut(s)	18, 566
HapII	CCGG	3 cut(s)	65, 114, 130
HgaI	GACGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	121, 464
HindIII	AAGCTT	1 cut(s)	220
HinfI	GANTC	5 cut(s)	82, 192, 211, 518, 572
HpaII	CCGG	3 cut(s)	65, 114, 130
HphI	GGTGA	2 cut(s)	217, 671
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	3 cut(s)	210, 216, 531
Hpy188III	TCNNGA	5 cut(s)	102, 142, 515, 522, 623
Hpy8I	GTNNAC	1 cut(s)	111
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	17, 412, 482
HpyCH4III	ACNGT	4 cut(s)	181, 458, 587, 673
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	2 cut(s)	154, 242
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 33, 47, 53, 563
HpyF3I	CTNAG	5 cut(s)	165, 414, 607, 624, 642
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	121, 464
KpnI	GGTACC	1 cut(s)	603
Kzo9I	GATC	1 cut(s)	524
Lsp1109I	GCAGC	1 cut(s)	138
LweI	GCATC	1 cut(s)	393
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	2 cut(s)	496, 592
MalI	GATC	1 cut(s)	526
MboI	GATC	1 cut(s)	524
MboII	GAAGA	4 cut(s)	88, 91, 357, 695
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	2 cut(s)	270, 333
MlyI	GAGTC	1 cut(s)	205
MnlI	CCTC	8 cut(s)	72, 163, 195, 253, 309, 315, 415, 639
MseI	TTAA	1 cut(s)	467
MslI	CAYNNNNRTG	2 cut(s)	401, 459
MspI	CCGG	3 cut(s)	65, 114, 130
MspR9I	CCNGG	2 cut(s)	131, 563
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	563
MwoI	GCNNNNNNNGC	5 cut(s)	24, 33, 47, 53, 563
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	1 cut(s)	524
NlaIII	CATG	2 cut(s)	121, 464
NlaIV	GGNNCC	3 cut(s)	72, 128, 601
NmuCI	GTSAC	1 cut(s)	592
NspI	RCATGY	1 cut(s)	121
NspV	TTCGAA	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	18
PctI	GAATGC	1 cut(s)	242
PfeI	GAWTC	4 cut(s)	82, 192, 518, 572
PflFI	GACNNNGTC	1 cut(s)	587
PkrI	GCNGC	5 cut(s)	49, 52, 55, 153, 408
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	3 cut(s)	72, 128, 601
PspPI	GGNCC	1 cut(s)	620
PstI	CTGCAG	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	524
PsyI	GACNNNGTC	1 cut(s)	587
RsaI	GTAC	1 cut(s)	601
RsaNI	GTAC	1 cut(s)	600
RseI	CAYNNNNRTG	2 cut(s)	401, 459
SaqAI	TTAA	1 cut(s)	467
SatI	GCNGC	5 cut(s)	48, 51, 54, 152, 407
Sau3AI	GATC	1 cut(s)	524
Sau96I	GGNCC	1 cut(s)	620
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	2 cut(s)	131, 563
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	6 cut(s)	224, 237, 264, 601, 608, 619
SfaNI	GCATC	1 cut(s)	393
SfcI	CTRYAG	2 cut(s)	152, 282
SfuI	TTCGAA	1 cut(s)	331
SinI	GGWCC	1 cut(s)	620
SmiMI	CAYNNNNRTG	2 cut(s)	401, 459
Sse9I	AATT	2 cut(s)	270, 333
SseBI	AGGCCT	1 cut(s)	18
SsiI	CCGC	7 cut(s)	5, 45, 48, 51, 54, 68, 406
StuI	AGGCCT	1 cut(s)	18
StyD4I	CCNGG	2 cut(s)	129, 561
TaaI	ACNGT	4 cut(s)	181, 458, 587, 673
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	3 cut(s)	141, 258, 331
TasI	AATT	2 cut(s)	270, 333
TauI	GCSGC	4 cut(s)	50, 53, 56, 409
TfiI	GAWTC	4 cut(s)	82, 192, 518, 572
Tru1I	TTAA	1 cut(s)	467
Tru9I	TTAA	1 cut(s)	467
TscAI	CASTG	3 cut(s)	461, 574, 592
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	1 cut(s)	404
TspRI	CASTG	3 cut(s)	461, 574, 592
Tth111I	GACNNNGTC	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	620
XapI	RAATTY	1 cut(s)	333
XceI	RCATGY	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.