The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Adaptin_N | PF01602 | 19 - 479 | 2.5e-94 | Adaptin N terminal region |
| Cnd1 | PF12717 | 112 - 261 | 1.2e-06 | non-SMC mitotic condensation complex subunit 1 |
| Coatamer_beta_C | PF07718 | 669 - 807 | 5.7e-55 | Coatomer beta C-terminal region |
| Coatomer_b_Cpla | PF14806 | 813 - 940 | 2.4e-56 | Coatomer beta subunit appendage platform |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 176 |
| AarI | CACCTGC | 1 cut(s) | 2645 |
| Acc36I | ACCTGC | 1 cut(s) | 2645 |
| AccB1I | GGYRCC | 1 cut(s) | 2335 |
| AccBSI | CCGCTC | 1 cut(s) | 1846 |
| AciI | CCGC | 5 cut(s) | 713, 997, 1846, 1918, 2146 |
| AclWI | GGATC | 4 cut(s) | 545, 1324, 1373, 1624 |
| AcsI | RAATTY | 4 cut(s) | 1633, 2108, 2591, 2722 |
| AcuI | CTGAAG | 8 cut(s) | 216, 299, 647, 1215, 1761, 1994, 2208, 2246 |
| AdeI | CACNNNGTG | 1 cut(s) | 1094 |
| AfaI | GTAC | 6 cut(s) | 16, 230, 332, 1121, 2079, 2205 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 2251 |
| AflII | CTTAAG | 1 cut(s) | 917 |
| AflIII | ACRYGT | 1 cut(s) | 1317 |
| AjiI | CACGTC | 1 cut(s) | 1243 |
| AjnI | CCWGG | 4 cut(s) | 231, 1209, 1304, 2073 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2258, 2290 |
| Alw21I | GWGCWC | 4 cut(s) | 966, 973, 1360, 2507 |
| Alw26I | GTCTC | 7 cut(s) | 368, 1475, 2380, 2381, 2414, 2636, 2805 |
| Alw44I | GTGCAC | 1 cut(s) | 1356 |
| AlwI | GGATC | 4 cut(s) | 545, 1324, 1373, 1624 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1580 |
| ApaLI | GTGCAC | 1 cut(s) | 1356 |
| ApeKI | GCWGC | 5 cut(s) | 187, 833, 836, 1574, 2675 |
| ApoI | RAATTY | 4 cut(s) | 1633, 2108, 2591, 2722 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 485, 517 |
| AseI | ATTAAT | 1 cut(s) | 1047 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 150, 660, 1056, 1722, 2259 |
| AspLEI | GCGC | 2 cut(s) | 1574, 2442 |
| AspS9I | GGNCC | 1 cut(s) | 1189 |
| AsuHPI | GGTGA | 9 cut(s) | 155, 1294, 1385, 1670, 2104, 2306, 2669, 2717, 2812 |
| AsuII | TTCGAA | 2 cut(s) | 257, 688 |
| AvaII | GGWCC | 1 cut(s) | 1189 |
| BaeGI | GKGCMC | 2 cut(s) | 1360, 1645 |
| BanI | GGYRCC | 1 cut(s) | 2335 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2061, 2093 |
| BbsI | GAAGAC | 5 cut(s) | 204, 1010, 1091, 1722, 2076 |
| Bbv12I | GWGCWC | 4 cut(s) | 966, 973, 1360, 2507 |
| BbvCI | CCTCAGC | 1 cut(s) | 156 |
| BbvI | GCAGC | 5 cut(s) | 174, 820, 823, 1586, 2687 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 450, 484, 587, 621, 2111, 2145 |
| BciT130I | CCWGG | 4 cut(s) | 233, 1211, 1306, 2075 |
| BcoDI | GTCTC | 7 cut(s) | 368, 1475, 2380, 2381, 2414, 2636, 2805 |
| BfaI | CTAG | 2 cut(s) | 12, 1527 |
| BfmI | CTRYAG | 3 cut(s) | 768, 1602, 2326 |
| BfrI | CTTAAG | 1 cut(s) | 917 |
| BfuAI | ACCTGC | 1 cut(s) | 2645 |
| BisI | GCNGC | 6 cut(s) | 188, 834, 837, 1575, 1918, 2676 |
| BlsI | GCNGC | 6 cut(s) | 189, 835, 838, 1576, 1919, 2677 |
| Bme1390I | CCNGG | 4 cut(s) | 233, 1211, 1306, 2075 |
| Bme18I | GGWCC | 1 cut(s) | 1189 |
| BmgBI | CACGTC | 1 cut(s) | 1243 |
| BmgT120I | GGNCC | 1 cut(s) | 1189 |
| BmiI | GGNNCC | 2 cut(s) | 390, 2337 |
| BmrFI | CCNGG | 4 cut(s) | 233, 1211, 1306, 2075 |
| BmrI | ACTGGG | 1 cut(s) | 2171 |
| BmsI | GCATC | 6 cut(s) | 97, 328, 433, 499, 2119, 2701 |
| BmuI | ACTGGG | 1 cut(s) | 2171 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2393 |
| BpiI | GAAGAC | 5 cut(s) | 204, 1010, 1091, 1722, 2076 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2580, 2612 |
| BpmI | CTGGAG | 5 cut(s) | 30, 254, 440, 698, 2124 |
| Bpu10I | CCTNAGC | 1 cut(s) | 156 |
| Bpu14I | TTCGAA | 2 cut(s) | 257, 688 |
| BpuEI | CTTGAG | 3 cut(s) | 961, 1124, 2081 |
| Bsa29I | ATCGAT | 1 cut(s) | 957 |
| BsaI | GGTCTC | 1 cut(s) | 2380 |
| BsaJI | CCNNGG | 8 cut(s) | 337, 1210, 1432, 1515, 1669, 2115, 2250, 2289 |
| BsaWI | WCCGGW | 1 cut(s) | 2005 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1665, 1695, 2474, 2504 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 2251 |
| Bse1I | ACTGG | 5 cut(s) | 653, 1535, 1660, 2107, 2177 |
| Bse3DI | GCAATG | 4 cut(s) | 634, 923, 1014, 2449 |
| BseBI | CCWGG | 4 cut(s) | 233, 1211, 1306, 2075 |
| BseCI | ATCGAT | 1 cut(s) | 957 |
| BseDI | CCNNGG | 8 cut(s) | 337, 1210, 1432, 1515, 1669, 2115, 2250, 2289 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 2251 |
| BseMI | GCAATG | 4 cut(s) | 634, 923, 1014, 2449 |
| BseNI | ACTGG | 5 cut(s) | 653, 1535, 1660, 2107, 2177 |
| BseRI | GAGGAG | 2 cut(s) | 1478, 1585 |
| BseSI | GKGCMC | 2 cut(s) | 1360, 1645 |
| BseXI | GCAGC | 5 cut(s) | 174, 820, 823, 1586, 2687 |
| BseYI | CCCAGC | 1 cut(s) | 788 |
| BsgI | GTGCAG | 3 cut(s) | 627, 1176, 1356 |
| Bsh1285I | CGRYCG | 1 cut(s) | 904 |
| BshNI | GGYRCC | 1 cut(s) | 2335 |
| BshVI | ATCGAT | 1 cut(s) | 957 |
| BsiEI | CGRYCG | 1 cut(s) | 904 |
| BsiHKAI | GWGCWC | 4 cut(s) | 966, 973, 1360, 2507 |
| BsiSI | CCGG | 1 cut(s) | 2006 |
| BslFI | GGGAC | 2 cut(s) | 55, 805 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 2251 |
| BsmAI | GTCTC | 7 cut(s) | 368, 1475, 2380, 2381, 2414, 2636, 2805 |
| BsmFI | GGGAC | 2 cut(s) | 55, 805 |
| BsmI | GAATGC | 2 cut(s) | 454, 2148 |
| Bso31I | GGTCTC | 1 cut(s) | 2380 |
| Bsp119I | TTCGAA | 2 cut(s) | 257, 688 |
| Bsp1286I | GDGCHC | 5 cut(s) | 966, 973, 1360, 1645, 2507 |
| Bsp143I | GATC | 8 cut(s) | 522, 550, 901, 1329, 1365, 1616, 2011, 2296 |
| Bsp19I | CCATGG | 2 cut(s) | 1515, 2289 |
| BspACI | CCGC | 5 cut(s) | 713, 997, 1846, 1918, 2146 |
| BspDI | ATCGAT | 1 cut(s) | 957 |
| BspLI | GGNNCC | 2 cut(s) | 390, 2337 |
| BspMAI | CTGCAG | 1 cut(s) | 772 |
| BspMI | ACCTGC | 1 cut(s) | 2645 |
| BspPI | GGATC | 4 cut(s) | 545, 1324, 1373, 1624 |
| BspT104I | TTCGAA | 2 cut(s) | 257, 688 |
| BspT107I | GGYRCC | 1 cut(s) | 2335 |
| BspTI | CTTAAG | 1 cut(s) | 917 |
| BspTNI | GGTCTC | 1 cut(s) | 2380 |
| BsrBI | CCGCTC | 1 cut(s) | 1846 |
| BsrDI | GCAATG | 4 cut(s) | 634, 923, 1014, 2449 |
| BsrI | ACTGG | 5 cut(s) | 653, 1535, 1660, 2107, 2177 |
| BssECI | CCNNGG | 8 cut(s) | 337, 1210, 1432, 1515, 1669, 2115, 2250, 2289 |
| BssMI | GATC | 8 cut(s) | 522, 550, 901, 1329, 1365, 1616, 2011, 2296 |
| BssT1I | CCWWGG | 5 cut(s) | 1432, 1515, 2115, 2250, 2289 |
| Bst2UI | CCWGG | 4 cut(s) | 233, 1211, 1306, 2075 |
| Bst4CI | ACNGT | 5 cut(s) | 1186, 1606, 1756, 2203, 2236 |
| Bst6I | CTCTTC | 3 cut(s) | 506, 1513, 1713 |
| BstAFI | CTTAAG | 1 cut(s) | 917 |
| BstBI | TTCGAA | 2 cut(s) | 257, 688 |
| BstC8I | GCNNGC | 4 cut(s) | 1180, 1687, 2097, 2351 |
| BstDSI | CCRYGG | 3 cut(s) | 337, 1515, 2289 |
| BstHHI | GCGC | 2 cut(s) | 1574, 2442 |
| BstKTI | GATC | 8 cut(s) | 525, 553, 904, 1332, 1368, 1619, 2014, 2299 |
| BstMAI | GTCTC | 7 cut(s) | 368, 1475, 2380, 2381, 2414, 2636, 2805 |
| BstMBI | GATC | 8 cut(s) | 522, 550, 901, 1329, 1365, 1616, 2011, 2296 |
| BstMCI | CGRYCG | 1 cut(s) | 904 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 223, 458, 821, 830, 895, 1148, 1682, 1798, 2645 |
| BstNI | CCWGG | 4 cut(s) | 233, 1211, 1306, 2075 |
| BstNSI | RCATGY | 1 cut(s) | 2353 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2393 |
| BstSCI | CCNGG | 4 cut(s) | 231, 1209, 1304, 2073 |
| BstSFI | CTRYAG | 3 cut(s) | 768, 1602, 2326 |
| BstSLI | GKGCMC | 2 cut(s) | 1360, 1645 |
| BstV1I | GCAGC | 5 cut(s) | 174, 820, 823, 1586, 2687 |
| BstV2I | GAAGAC | 5 cut(s) | 204, 1010, 1091, 1722, 2076 |
| BstX2I | RGATCY | 2 cut(s) | 550, 1329 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1312 |
| BstYI | RGATCY | 2 cut(s) | 550, 1329 |
| Bsu15I | ATCGAT | 1 cut(s) | 957 |
| BsuTUI | ATCGAT | 1 cut(s) | 957 |
| BtgI | CCRYGG | 3 cut(s) | 337, 1515, 2289 |
| BtgZI | GCGATG | 1 cut(s) | 410 |
| BtrI | CACGTC | 1 cut(s) | 1243 |
| BtsI | GCAGTG | 2 cut(s) | 615, 2634 |
| BtsIMutI | CAGTG | 7 cut(s) | 347, 411, 615, 1191, 1619, 2176, 2634 |
| BveI | ACCTGC | 1 cut(s) | 2645 |
| Cac8I | GCNNGC | 4 cut(s) | 1180, 1687, 2097, 2351 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1580 |
| CfoI | GCGC | 2 cut(s) | 1574, 2442 |
| Cfr13I | GGNCC | 1 cut(s) | 1189 |
| ClaI | ATCGAT | 1 cut(s) | 957 |
| CseI | GACGC | 2 cut(s) | 2303, 2794 |
| CsiI | ACCWGGT | 2 cut(s) | 1304, 2073 |
| Csp6I | GTAC | 6 cut(s) | 15, 229, 331, 1120, 2078, 2204 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1167, 1202 |
| CviQI | GTAC | 6 cut(s) | 15, 229, 331, 1120, 2078, 2204 |
| DpnI | GATC | 8 cut(s) | 524, 552, 903, 1331, 1367, 1618, 2013, 2298 |
| DpnII | GATC | 8 cut(s) | 522, 550, 901, 1329, 1365, 1616, 2011, 2296 |
| DraIII | CACNNNGTG | 1 cut(s) | 1094 |
| Eam1104I | CTCTTC | 3 cut(s) | 506, 1513, 1713 |
| EarI | CTCTTC | 3 cut(s) | 506, 1513, 1713 |
| Eco130I | CCWWGG | 5 cut(s) | 1432, 1515, 2115, 2250, 2289 |
| Eco31I | GGTCTC | 1 cut(s) | 2380 |
| Eco32I | GATATC | 3 cut(s) | 937, 994, 2476 |
| Eco47I | GGWCC | 1 cut(s) | 1189 |
| Eco57I | CTGAAG | 8 cut(s) | 216, 299, 647, 1215, 1761, 1994, 2208, 2246 |
| EcoRI | GAATTC | 2 cut(s) | 2108, 2591 |
| EcoRII | CCWGG | 4 cut(s) | 231, 1209, 1304, 2073 |
| EcoRV | GATATC | 3 cut(s) | 937, 994, 2476 |
| EcoT14I | CCWWGG | 5 cut(s) | 1432, 1515, 2115, 2250, 2289 |
| EcoT22I | ATGCAT | 1 cut(s) | 574 |
| ErhI | CCWWGG | 5 cut(s) | 1432, 1515, 2115, 2250, 2289 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 745, 777, 878, 910 |
| FaqI | GGGAC | 2 cut(s) | 55, 805 |
| FauNDI | CATATG | 1 cut(s) | 2194 |
| Fnu4HI | GCNGC | 6 cut(s) | 188, 834, 837, 1575, 1918, 2676 |
| Fsp4HI | GCNGC | 6 cut(s) | 188, 834, 837, 1575, 1918, 2676 |
| FspBI | CTAG | 2 cut(s) | 12, 1527 |
| GlaI | GCGC | 2 cut(s) | 1573, 2441 |
| GluI | GCNGC | 6 cut(s) | 188, 834, 837, 1575, 1918, 2676 |
| GsaI | CCCAGC | 1 cut(s) | 792 |
| GsuI | CTGGAG | 5 cut(s) | 30, 254, 440, 698, 2124 |
| HapII | CCGG | 1 cut(s) | 2006 |
| HgaI | GACGC | 2 cut(s) | 2303, 2794 |
| HhaI | GCGC | 2 cut(s) | 1574, 2442 |
| Hin6I | GCGC | 2 cut(s) | 1572, 2440 |
| HinP1I | GCGC | 2 cut(s) | 1572, 2440 |
| HincII | GTYRAC | 3 cut(s) | 634, 1695, 2057 |
| HindII | GTYRAC | 3 cut(s) | 634, 1695, 2057 |
| HindIII | AAGCTT | 2 cut(s) | 215, 887 |
| HpaII | CCGG | 1 cut(s) | 2006 |
| HphI | GGTGA | 9 cut(s) | 155, 1294, 1385, 1670, 2104, 2306, 2669, 2717, 2812 |
| Hpy166II | GTNNAC | 9 cut(s) | 28, 634, 1358, 1695, 1747, 2057, 2206, 2382, 2566 |
| Hpy188III | TCNNGA | 9 cut(s) | 77, 419, 526, 1238, 1527, 1629, 1933, 2225, 2404 |
| Hpy8I | GTNNAC | 9 cut(s) | 28, 634, 1358, 1695, 1747, 2057, 2206, 2382, 2566 |
| HpyCH4III | ACNGT | 5 cut(s) | 1186, 1606, 1756, 2203, 2236 |
| HpyCH4IV | ACGT | 5 cut(s) | 604, 1224, 1242, 1319, 1691 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 223, 458, 821, 830, 895, 1148, 1682, 1798, 2645 |
| HpySE526I | ACGT | 5 cut(s) | 604, 1224, 1242, 1319, 1691 |
| HspAI | GCGC | 2 cut(s) | 1572, 2440 |
| Kzo9I | GATC | 8 cut(s) | 522, 550, 901, 1329, 1365, 1616, 2011, 2296 |
| LmnI | GCTCC | 7 cut(s) | 235, 421, 679, 1673, 2437, 2644, 2778 |
| Lsp1109I | GCAGC | 5 cut(s) | 174, 820, 823, 1586, 2687 |
| LweI | GCATC | 6 cut(s) | 97, 328, 433, 499, 2119, 2701 |
| MabI | ACCWGGT | 2 cut(s) | 1304, 2073 |
| MaeI | CTAG | 2 cut(s) | 12, 1527 |
| MaeII | ACGT | 5 cut(s) | 604, 1224, 1242, 1319, 1691 |
| MaeIII | GTNAC | 7 cut(s) | 343, 408, 872, 2171, 2197, 2230, 2762 |
| MalI | GATC | 8 cut(s) | 524, 552, 903, 1331, 1367, 1618, 2013, 2298 |
| MbiI | CCGCTC | 1 cut(s) | 1846 |
| MboI | GATC | 8 cut(s) | 522, 550, 901, 1329, 1365, 1616, 2011, 2296 |
| MflI | RGATCY | 2 cut(s) | 550, 1329 |
| MhlI | GDGCHC | 5 cut(s) | 966, 973, 1360, 1645, 2507 |
| MlyI | GAGTC | 6 cut(s) | 37, 391, 1475, 2047, 2062, 2403 |
| MmeI | TCCRAC | 6 cut(s) | 344, 1293, 1695, 1887, 2021, 2046 |
| Mph1103I | ATGCAT | 1 cut(s) | 574 |
| MroXI | GAANNNNTTC | 5 cut(s) | 150, 660, 1056, 1722, 2259 |
| MseI | TTAA | 9 cut(s) | 66, 732, 752, 918, 1047, 1161, 2142, 2358, 2457 |
| MslI | CAYNNNNRTG | 5 cut(s) | 324, 1152, 1881, 2211, 2621 |
| MspA1I | CMGCKG | 1 cut(s) | 713 |
| MspCI | CTTAAG | 1 cut(s) | 917 |
| MspI | CCGG | 1 cut(s) | 2006 |
| MspR9I | CCNGG | 4 cut(s) | 233, 1211, 1306, 2075 |
| Mva1269I | GAATGC | 2 cut(s) | 454, 2148 |
| MvaI | CCWGG | 4 cut(s) | 233, 1211, 1306, 2075 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 223, 458, 821, 830, 895, 1148, 1682, 1798, 2645 |
| NcoI | CCATGG | 2 cut(s) | 1515, 2289 |
| NdeI | CATATG | 1 cut(s) | 2194 |
| NdeII | GATC | 8 cut(s) | 522, 550, 901, 1329, 1365, 1616, 2011, 2296 |
| NlaIV | GGNNCC | 2 cut(s) | 390, 2337 |
| NmuCI | GTSAC | 3 cut(s) | 343, 872, 2171 |
| NsiI | ATGCAT | 1 cut(s) | 574 |
| NspI | RCATGY | 1 cut(s) | 2353 |
| NspV | TTCGAA | 2 cut(s) | 257, 688 |
| PaeI | GCATGC | 1 cut(s) | 2353 |
| PaqCI | CACCTGC | 1 cut(s) | 2645 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2409 |
| PctI | GAATGC | 2 cut(s) | 454, 2148 |
| PdmI | GAANNNNTTC | 5 cut(s) | 150, 660, 1056, 1722, 2259 |
| PfeI | GAWTC | 9 cut(s) | 254, 298, 656, 685, 1495, 1835, 1910, 2166, 2667 |
| PflFI | GACNNNGTC | 1 cut(s) | 2177 |
| PkrI | GCNGC | 6 cut(s) | 189, 835, 838, 1576, 1919, 2677 |
| Ple19I | CGATCG | 1 cut(s) | 904 |
| PleI | GAGTC | 6 cut(s) | 37, 391, 1474, 2046, 2061, 2402 |
| PpsI | GAGTC | 6 cut(s) | 37, 391, 1474, 2046, 2061, 2402 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2393 |
| PshBI | ATTAAT | 1 cut(s) | 1047 |
| PsiI | TTATAA | 1 cut(s) | 176 |
| Psp6I | CCWGG | 4 cut(s) | 231, 1209, 1304, 2073 |
| PspFI | CCCAGC | 1 cut(s) | 788 |
| PspGI | CCWGG | 4 cut(s) | 231, 1209, 1304, 2073 |
| PspN4I | GGNNCC | 2 cut(s) | 390, 2337 |
| PspPI | GGNCC | 1 cut(s) | 1189 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1546, 1578 |
| PstI | CTGCAG | 1 cut(s) | 772 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1580 |
| PsuI | RGATCY | 2 cut(s) | 550, 1329 |
| PsyI | GACNNNGTC | 1 cut(s) | 2177 |
| PvuI | CGATCG | 1 cut(s) | 904 |
| RsaI | GTAC | 6 cut(s) | 16, 230, 332, 1121, 2079, 2205 |
| RsaNI | GTAC | 6 cut(s) | 15, 229, 331, 1120, 2078, 2204 |
| RseI | CAYNNNNRTG | 5 cut(s) | 324, 1152, 1881, 2211, 2621 |
| SaqAI | TTAA | 9 cut(s) | 66, 732, 752, 918, 1047, 1161, 2142, 2358, 2457 |
| SatI | GCNGC | 6 cut(s) | 188, 834, 837, 1575, 1918, 2676 |
| Sau3AI | GATC | 8 cut(s) | 522, 550, 901, 1329, 1365, 1616, 2011, 2296 |
| Sau96I | GGNCC | 1 cut(s) | 1189 |
| SchI | GAGTC | 6 cut(s) | 37, 391, 1475, 2047, 2062, 2403 |
| ScrFI | CCNGG | 4 cut(s) | 233, 1211, 1306, 2075 |
| SduI | GDGCHC | 5 cut(s) | 966, 973, 1360, 1645, 2507 |
| SexAI | ACCWGGT | 2 cut(s) | 1304, 2073 |
| SfaNI | GCATC | 6 cut(s) | 97, 328, 433, 499, 2119, 2701 |
| SfcI | CTRYAG | 3 cut(s) | 768, 1602, 2326 |
| SfuI | TTCGAA | 2 cut(s) | 257, 688 |
| SinI | GGWCC | 1 cut(s) | 1189 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 324, 1152, 1881, 2211, 2621 |
| SmlI | CTYRAG | 4 cut(s) | 917, 976, 1103, 2060 |
| SmoI | CTYRAG | 4 cut(s) | 917, 976, 1103, 2060 |
| SphI | GCATGC | 1 cut(s) | 2353 |
| SsiI | CCGC | 5 cut(s) | 713, 997, 1846, 1918, 2146 |
| SspI | AATATT | 1 cut(s) | 1045 |
| SspMI | CTAG | 2 cut(s) | 12, 1527 |
| StyD4I | CCNGG | 4 cut(s) | 231, 1209, 1304, 2073 |
| StyI | CCWWGG | 5 cut(s) | 1432, 1515, 2115, 2250, 2289 |
| TaaI | ACNGT | 5 cut(s) | 1186, 1606, 1756, 2203, 2236 |
| TaiI | ACGT | 5 cut(s) | 607, 1227, 1245, 1322, 1694 |
| TaqI | TCGA | 9 cut(s) | 78, 257, 470, 525, 688, 829, 900, 957, 2598 |
| TatI | WGTACW | 2 cut(s) | 330, 1119 |
| TauI | GCSGC | 1 cut(s) | 1920 |
| TfiI | GAWTC | 9 cut(s) | 254, 298, 656, 685, 1495, 1835, 1910, 2166, 2667 |
| Tru1I | TTAA | 9 cut(s) | 66, 732, 752, 918, 1047, 1161, 2142, 2358, 2457 |
| Tru9I | TTAA | 9 cut(s) | 66, 732, 752, 918, 1047, 1161, 2142, 2358, 2457 |
| TscAI | CASTG | 7 cut(s) | 354, 411, 615, 1191, 1626, 2176, 2641 |
| TseFI | GTSAC | 3 cut(s) | 343, 872, 2171 |
| TseI | GCWGC | 5 cut(s) | 187, 833, 836, 1574, 2675 |
| Tsp45I | GTSAC | 3 cut(s) | 343, 872, 2171 |
| TspDTI | ATGAA | 8 cut(s) | 128, 154, 383, 669, 795, 1065, 1907, 2639 |
| TspGWI | ACGGA | 3 cut(s) | 326, 1322, 2759 |
| TspRI | CASTG | 7 cut(s) | 354, 411, 615, 1191, 1626, 2176, 2641 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2177 |
| Vha464I | CTTAAG | 1 cut(s) | 917 |
| VneI | GTGCAC | 1 cut(s) | 1356 |
| VpaK11BI | GGWCC | 1 cut(s) | 1189 |
| VspI | ATTAAT | 1 cut(s) | 1047 |
| XapI | RAATTY | 4 cut(s) | 1633, 2108, 2591, 2722 |
| XbaI | TCTAGA | 1 cut(s) | 1526 |
| XceI | RCATGY | 1 cut(s) | 2353 |
| XmnI | GAANNNNTTC | 5 cut(s) | 150, 660, 1056, 1722, 2259 |
| XspI | CTAG | 2 cut(s) | 12, 1527 |
| Zsp2I | ATGCAT | 1 cut(s) | 574 |