pycom15g32330

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
31287437 .. 31287730
294 bp
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UTR
Exon/CDS
Intron
pycom15g32330.1

Sequence Viewer

Length: 294 bp
ATGGAAGTTCTGTTACAAAACAATGTTAATCTTGTTGCTGAAAATAATTACAGTATTACACCTTTGCAGTCATCTGTTTTGGTTGGTTCACTACCATGCTTAGAATTATTGGTTCATATTGATCATCTAAATATGCATATCACCCCCTGGGAAGTTGCATTGATATTGGGACAATGGGTTTTTGATATTAAAAAAGACACAAAAATGCCAGTTTACTATGCTTTGATCAAATTGCTACAGGACAAGGACTTATCTGTAAGGTTGGCAGCTTGTAGGTCTCTTTGTTTGCAGTGA

Protein Analysis

98

Amino Acids

11.02

Weight (kDa)

5.8

Isoelectric Point (pI)

70.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
Alw26I GTCTC 1 cut(s) 282
ApeKI GCWGC 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 133
BarI GAAGNNNNNNTAC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 278
BciT130I CCWGG 1 cut(s) 148
BclI TGATCA 2 cut(s) 121, 225
BcoDI GTCTC 1 cut(s) 282
BfmI CTRYAG 1 cut(s) 236
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 148
BmrFI CCNGG 1 cut(s) 148
BsaI GGTCTC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 146, 147
Bse1I ACTGG 1 cut(s) 209
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 2 cut(s) 146, 147
BseNI ACTGG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 278
BslFI GGGAC 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 183
Bso31I GGTCTC 1 cut(s) 282
Bsp143I GATC 2 cut(s) 121, 225
BspTNI GGTCTC 1 cut(s) 282
BsrI ACTGG 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 146, 147
BssMI GATC 2 cut(s) 121, 225
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 100
BstKTI GATC 2 cut(s) 124, 228
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 2 cut(s) 121, 225
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 146
BstSFI CTRYAG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 278
CviAII CATG 1 cut(s) 96
CviJI RGCY 1 cut(s) 269
CviKI_1 RGCY 1 cut(s) 269
DdeI CTNAG 1 cut(s) 100
DpnI GATC 2 cut(s) 123, 227
DpnII GATC 2 cut(s) 121, 225
Eco31I GGTCTC 1 cut(s) 282
EcoRII CCWGG 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 138
FaeI CATG 1 cut(s) 99
FaiI YATR 5 cut(s) 97, 117, 134, 138, 219
FaqI GGGAC 1 cut(s) 183
FatI CATG 1 cut(s) 95
FbaI TGATCA 2 cut(s) 121, 225
Fnu4HI GCNGC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 267
Hin1II CATG 1 cut(s) 99
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 2 cut(s) 89, 214
Hpy8I GTNNAC 2 cut(s) 89, 214
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 4 cut(s) 67, 136, 158, 289
HpyF3I CTNAG 1 cut(s) 100
Hsp92II CATG 1 cut(s) 99
Ksp22I TGATCA 2 cut(s) 121, 225
Kzo9I GATC 2 cut(s) 121, 225
LpnPI CCDG 4 cut(s) 133, 160, 222, 224
Lsp1109I GCAGC 1 cut(s) 278
MaeIII GTNAC 1 cut(s) 12
MalI GATC 2 cut(s) 123, 227
MboI GATC 2 cut(s) 121, 225
MluCI AATT 3 cut(s) 46, 104, 230
Mph1103I ATGCAT 1 cut(s) 138
MseI TTAA 2 cut(s) 27, 189
MslI CAYNNNNRTG 2 cut(s) 94, 203
MspR9I CCNGG 1 cut(s) 148
MvaI CCWGG 1 cut(s) 148
NdeII GATC 2 cut(s) 121, 225
NlaIII CATG 1 cut(s) 99
NsiI ATGCAT 1 cut(s) 138
PasI CCCWGGG 1 cut(s) 147
PkrI GCNGC 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
RseI CAYNNNNRTG 2 cut(s) 94, 203
SaqAI TTAA 2 cut(s) 27, 189
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 2 cut(s) 121, 225
ScrFI CCNGG 1 cut(s) 148
SetI ASST 4 cut(s) 64, 263, 271, 278
SfcI CTRYAG 1 cut(s) 236
SgeI CNNG 8 cut(s) 44, 108, 159, 160, 221, 251, 256, 282
SmiMI CAYNNNNRTG 2 cut(s) 94, 203
Sse9I AATT 3 cut(s) 46, 104, 230
StyD4I CCNGG 1 cut(s) 146
TaaI ACNGT 1 cut(s) 53
TasI AATT 3 cut(s) 46, 104, 230
Tru1I TTAA 2 cut(s) 27, 189
Tru9I TTAA 2 cut(s) 27, 189
TseI GCWGC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 104
Zsp2I ATGCAT 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.