Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000969

Physical Location & Seq

Genomic Coordinates Reverse (-)

53667255 .. 53670000

Gene Structure 2746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0417300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGTTTATGATCAAAGTCATAAAACTAAAATTAGTGATTCCATGTTGGTCTTACTAGCTTTAGCTTGCTCATTGTTGGGGAGTGCATTAGTTGATGGAACAAGACTTGTGACTGCCAATAATTTTGAATCAGTTAAGCACAAGGGAACAGTCAAAACCATAGAGAGTGACAGCGGTGATGTTATAGATTGCGTTGAGATTTACAAACAACCTGCTTTTGACCATCCCCTTCTCAGGAATCACACTATAGAGATGGAACCCAGTTCAACTCCAAGTGGAGTAAAACCAACAAACAACCAAGCCAAGCTTATTCAAGATTGGTTCAAGAATGGAGAATGCCCTTACGGAACGATCCCCATCATTAGGCCACAAAGATATGATTATAATTGGAGAGCCCCAAGAAGGCTTGATAACAGCTTTGGTGATAATCCTTATGAAAATCATGAGTACGCCAAAGTTTTCTTGCCCGATGGAACCTACTATGGAGCACATGCAAGTATGAATGTGTGGACACCTGCAACTTACGATACTGACATTAGCCTAGCTCAGATTTGGGTTGTCTCTGGTGCAGGCGAACAACTGAACACTATCGAAGCAGGGTGGATCACTCATTCAGGTCGGAATCAAACAAGGATGTTCTTATACTGGACGAGGGACAATTACAATAGCACCGGTTGCTACAATCTTGACTGCCCTGGTTTCGTGCAAACCACCCGTAAATATGCAGTTGGTGCTGTTATACCACGTGTTTCCAGCTACAATGGGTCACAATGTTCGTTAGTTTTCACCATAGTCAAGGCGCTGCCGAGTGGCAATTGGTGGCTCCAAATTCAAGGTGAGTACATAGGTTATTGGCCTGGCTCCATTTTTACAACACTGTCTGATCACTCTACAAGAATAACCTGGGGTGGGGAGATTGGCACTTCTACACCACATGGTCGTCACACACAAACTGAAATGGGCAGTGGCCATTTCCCTCATGAAGGCTATGGAAAAGCGAGTTATTTTTACCATGTTCAGTATGCGGACCAACCTGGCTCTTTCAAAGATGCTACAAGTCTCATCCCTTACGCAACAAAGCCTTTATGTTATGATATAATTGTTTTTCCTCCTAGGGAAGGTACTTCTTATGGAACTAGTTTCTTTTATGGAGGTCCTGGATACTCCAGTTCTTGTCATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005911 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030054 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_N Coatamer_beta_C Coatomer_b_Cpla

Protein Analysis

394

Amino Acids

43.99

Weight (kDa)

6.26

Isoelectric Point (pI)

30.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	53 - 127	1.1e-25	Neprosin activation peptide
Neprosin	PF03080	177 - 386	1.1e-66	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31480 AT4G31480 AT4G31480 AT4G31480 AT4G31480 AT4G31480 AT4G31480 AT4G31480 AT4G31480 AT4G31490 AT4G31490 AT4G31490
fragaria_vesca	FvH4_4g12700 FvH4_4g12700 FvH4_4g12700 FvH4_6g37230 FvH4_6g37230 FvH4_6g37230
malus_domestica	MD04G1023700.v1.1 MD09G1159400.v1.1 MD13G1280100.v1.1 MD17G1145600.v1.1
prunus_persica	Prupe.3G018300_v2.0.a1 Prupe.3G018400_v2.0.a1
pyrus_communis	pycom04g02030 pycom09g07780 pycom09g18330 pycom13g29300 pycom15g32330 pycom15g32340 pycom17g13850
rosa_chinensis	RchiOBHm_Chr2g0149941 RchiOBHm_Chr2g0149961 RchiOBHm_Chr2g0149991 RchiOBHm_Chr4g0411591
rosa_laevigata	RLG00000008343 RLG00000020457 RLG00000020458
rosa_multiflora	Rmu_sc0001899.1_g000002 Rmu_sc0006550.1_g000008
rosa_roxburghii	Rroxscaffold_2G00097530 Rroxscaffold_2G00097540 Rroxscaffold_5G00356170
rosa_rugosa	Rorug02G0417300 Rorug04G0107800
rosa_samantha	Rh2AG476800 Rh2AG476900 Rh2AG477100 Rh2BG488500 Rh2BG488600 Rh2CG462500 Rh2CG462600 Rh2CG462800 Rh2DG497600 Rh2DG497700 Rh4AG169200 Rh4BG166100 Rh4CG180900 Rh4DG163500
rosa_wichuraiana	Rw2G038870 Rw2G038880 Rw2G038900 Rw4G014060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	384
AarI	CACCTGC	1 cut(s)	523
Acc36I	ACCTGC	2 cut(s)	220, 523
AciI	CCGC	2 cut(s)	174, 1025
AclWI	GGATC	2 cut(s)	346, 611
AcoI	YGGCCR	1 cut(s)	967
AcsI	RAATTY	1 cut(s)	828
AcvI	CACGTG	1 cut(s)	746
AfaI	GTAC	3 cut(s)	449, 842, 1123
AfiI	CCNNNNNNNGG	6 cut(s)	234, 363, 402, 909, 983, 1118
AflIII	ACRYGT	1 cut(s)	745
AgeI	ACCGGT	1 cut(s)	671
AgsI	TTSAA	6 cut(s)	128, 267, 314, 325, 833, 1045
AhlI	ACTAGT	1 cut(s)	1136
AjnI	CCWGG	5 cut(s)	694, 856, 902, 1033, 1156
AluBI	AGCT	6 cut(s)	59, 65, 307, 417, 545, 756
AluI	AGCT	6 cut(s)	59, 65, 307, 417, 545, 756
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	2 cut(s)	565, 1064
AlwI	GGATC	2 cut(s)	346, 611
AoxI	GGCC	3 cut(s)	365, 854, 967
ApeKI	GCWGC	1 cut(s)	802
ApoI	RAATTY	1 cut(s)	828
AsiGI	ACCGGT	1 cut(s)	671
AspA2I	CCTAGG	1 cut(s)	1112
AspLEI	GCGC	1 cut(s)	802
AspS9I	GGNCC	2 cut(s)	1027, 1154
AsuHPI	GGTGA	4 cut(s)	188, 434, 778, 848
AvaII	GGWCC	2 cut(s)	1027, 1154
AvrII	CCTAGG	1 cut(s)	1112
BaeI	ACNNNNGTAYC	1 cut(s)	1153
BalI	TGGCCA	1 cut(s)	969
BanII	GRGCYC	1 cut(s)	397
BbrPI	CACGTG	1 cut(s)	746
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	1 cut(s)	789
BccI	CCATC	5 cut(s)	89, 231, 247, 365, 464
BciT130I	CCWGG	5 cut(s)	696, 858, 904, 1035, 1158
BciVI	GTATCC	1 cut(s)	1154
BclI	TGATCA	2 cut(s)	10, 883
BcoDI	GTCTC	2 cut(s)	565, 1064
BcuI	ACTAGT	1 cut(s)	1136
BfaI	CTAG	4 cut(s)	56, 542, 1113, 1137
BfmI	CTRYAG	1 cut(s)	246
BfoI	RGCGCY	1 cut(s)	803
BfuAI	ACCTGC	2 cut(s)	220, 523
BfuI	GTATCC	1 cut(s)	1154
BisI	GCNGC	1 cut(s)	803
BlnI	CCTAGG	1 cut(s)	1112
BlsI	GCNGC	1 cut(s)	804
Bme1390I	CCNGG	5 cut(s)	696, 858, 904, 1035, 1158
Bme18I	GGWCC	2 cut(s)	1027, 1154
BmgT120I	GGNCC	2 cut(s)	1027, 1154
BmiI	GGNNCC	4 cut(s)	258, 475, 824, 862
BmrFI	CCNGG	5 cut(s)	696, 858, 904, 1035, 1158
BmrI	ACTGGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	1039
BmuI	ACTGGG	1 cut(s)	255
BpmI	CTGGAG	1 cut(s)	1150
BsaAI	YACGTR	1 cut(s)	746
BsaBI	GATNNNNATC	1 cut(s)	356
BsaJI	CCNNGG	3 cut(s)	694, 903, 1112
BsaWI	WCCGGW	1 cut(s)	671
Bsc4I	CCNNNNNNNGG	6 cut(s)	234, 363, 402, 909, 983, 1118
Bse118I	RCCGGY	1 cut(s)	671
Bse1I	ACTGG	3 cut(s)	261, 650, 1167
Bse8I	GATNNNNATC	1 cut(s)	356
BseBI	CCWGG	5 cut(s)	696, 858, 904, 1035, 1158
BseDI	CCNNGG	3 cut(s)	694, 903, 1112
BseGI	GGATG	3 cut(s)	223, 639, 1062
BseJI	GATNNNNATC	1 cut(s)	356
BseLI	CCNNNNNNNGG	6 cut(s)	234, 363, 402, 909, 983, 1118
BseMII	CTCAG	2 cut(s)	247, 560
BseNI	ACTGG	3 cut(s)	261, 650, 1167
BseXI	GCAGC	1 cut(s)	789
BsgI	GTGCAG	1 cut(s)	588
BshFI	GGCC	3 cut(s)	367, 856, 969
BshTI	ACCGGT	1 cut(s)	671
BsiHKAI	GWGCWC	1 cut(s)	490
BsiSI	CCGG	1 cut(s)	672
BslFI	GGGAC	1 cut(s)	668
BslI	CCNNNNNNNGG	6 cut(s)	234, 363, 402, 909, 983, 1118
BsmAI	GTCTC	2 cut(s)	565, 1064
BsmFI	GGGAC	1 cut(s)	668
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	3 cut(s)	367, 856, 969
Bsp1286I	GDGCHC	2 cut(s)	397, 490
Bsp143I	GATC	4 cut(s)	10, 351, 603, 883
BspACI	CCGC	2 cut(s)	174, 1025
BspANI	GGCC	3 cut(s)	367, 856, 969
BspCNI	CTCAG	2 cut(s)	246, 559
BspHI	TCATGA	2 cut(s)	442, 979
BspLI	GGNNCC	4 cut(s)	258, 475, 824, 862
BspMI	ACCTGC	2 cut(s)	220, 523
BspPI	GGATC	2 cut(s)	346, 611
BsrFI	RCCGGY	1 cut(s)	671
BsrI	ACTGG	3 cut(s)	261, 650, 1167
BssAI	RCCGGY	1 cut(s)	671
BssECI	CCNNGG	3 cut(s)	694, 903, 1112
BssMI	GATC	4 cut(s)	10, 351, 603, 883
BssT1I	CCWWGG	1 cut(s)	1112
Bst2UI	CCWGG	5 cut(s)	696, 858, 904, 1035, 1158
Bst4CI	ACNGT	2 cut(s)	151, 879
BstAPI	GCANNNNNTGC	2 cut(s)	675, 731
BstBAI	YACGTR	1 cut(s)	746
BstC8I	GCNNGC	2 cut(s)	67, 571
BstDEI	CTNAG	2 cut(s)	233, 546
BstENI	CCTNNNNNAGG	2 cut(s)	981, 1116
BstF5I	GGATG	3 cut(s)	223, 639, 1062
BstH2I	RGCGCY	1 cut(s)	803
BstHHI	GCGC	1 cut(s)	802
BstKTI	GATC	4 cut(s)	13, 354, 606, 886
BstMAI	GTCTC	2 cut(s)	565, 1064
BstMBI	GATC	4 cut(s)	10, 351, 603, 883
BstMWI	GCNNNNNNNGC	2 cut(s)	675, 731
BstNI	CCWGG	5 cut(s)	696, 858, 904, 1035, 1158
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	5 cut(s)	694, 856, 902, 1033, 1156
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	789
BsuI	GTATCC	1 cut(s)	1154
BsuRI	GGCC	3 cut(s)	367, 856, 969
BtsCI	GGATG	3 cut(s)	223, 639, 1062
BtsI	GCAGTG	1 cut(s)	970
BtsIMutI	CAGTG	2 cut(s)	875, 970
BveI	ACCTGC	2 cut(s)	220, 523
Cac8I	GCNNGC	2 cut(s)	67, 571
CciI	TCATGA	2 cut(s)	442, 979
CfoI	GCGC	1 cut(s)	802
Cfr10I	RCCGGY	1 cut(s)	671
Cfr13I	GGNCC	2 cut(s)	1027, 1154
Csp6I	GTAC	3 cut(s)	448, 841, 1122
CspAI	ACCGGT	1 cut(s)	671
CviAII	CATG	6 cut(s)	43, 443, 491, 935, 980, 1013
CviQI	GTAC	3 cut(s)	448, 841, 1122
DdeI	CTNAG	2 cut(s)	233, 546
DpnI	GATC	4 cut(s)	12, 353, 605, 885
DpnII	GATC	4 cut(s)	10, 351, 603, 883
EaeI	YGGCCR	1 cut(s)	967
Eco130I	CCWWGG	1 cut(s)	1112
Eco24I	GRGCYC	1 cut(s)	397
Eco47I	GGWCC	2 cut(s)	1027, 1154
Eco72I	CACGTG	1 cut(s)	746
EcoNI	CCTNNNNNAGG	2 cut(s)	981, 1116
EcoO109I	RGGNCCY	1 cut(s)	1154
EcoRII	CCWGG	5 cut(s)	694, 856, 902, 1033, 1156
EcoT14I	CCWWGG	1 cut(s)	1112
EcoT38I	GRGCYC	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	1112
FaeI	CATG	6 cut(s)	46, 446, 494, 938, 983, 1016
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FaqI	GGGAC	1 cut(s)	668
FatI	CATG	6 cut(s)	42, 442, 490, 934, 979, 1012
FbaI	TGATCA	2 cut(s)	10, 883
Fnu4HI	GCNGC	1 cut(s)	803
FokI	GGATG	3 cut(s)	210, 646, 1049
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	1 cut(s)	803
FspBI	CTAG	4 cut(s)	56, 542, 1113, 1137
GlaI	GCGC	1 cut(s)	801
GluI	GCNGC	1 cut(s)	803
GsuI	CTGGAG	1 cut(s)	1150
HaeII	RGCGCY	1 cut(s)	803
HaeIII	GGCC	3 cut(s)	367, 856, 969
HapII	CCGG	1 cut(s)	672
HhaI	GCGC	1 cut(s)	802
Hin1II	CATG	6 cut(s)	46, 446, 494, 938, 983, 1016
Hin6I	GCGC	1 cut(s)	800
HinP1I	GCGC	1 cut(s)	800
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	4 cut(s)	38, 128, 238, 622
HpaII	CCGG	1 cut(s)	672
HphI	GGTGA	4 cut(s)	188, 434, 778, 848
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188I	TCNGA	3 cut(s)	549, 621, 883
Hpy188III	TCNNGA	6 cut(s)	235, 314, 325, 443, 686, 980
Hpy8I	GTNNAC	1 cut(s)	510
HpyAV	CCTTC	4 cut(s)	239, 396, 977, 1112
HpyCH4III	ACNGT	2 cut(s)	151, 879
HpyCH4IV	ACGT	1 cut(s)	745
HpyCH4V	TGCA	6 cut(s)	86, 494, 518, 569, 706, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	675, 731
HpyF3I	CTNAG	2 cut(s)	233, 546
HpySE526I	ACGT	1 cut(s)	745
Hsp92II	CATG	6 cut(s)	46, 446, 494, 938, 983, 1016
HspAI	GCGC	1 cut(s)	800
Ksp22I	TGATCA	2 cut(s)	10, 883
Kzo9I	GATC	4 cut(s)	10, 351, 603, 883
LmnI	GCTCC	3 cut(s)	485, 828, 866
Lsp1109I	GCAGC	1 cut(s)	789
LweI	GCATC	1 cut(s)	1039
MaeI	CTAG	4 cut(s)	56, 542, 1113, 1137
MaeII	ACGT	1 cut(s)	745
MaeIII	GTNAC	4 cut(s)	109, 167, 765, 941
MalI	GATC	4 cut(s)	12, 353, 605, 885
MboI	GATC	4 cut(s)	10, 351, 603, 883
MfeI	CAATTG	1 cut(s)	814
MhlI	GDGCHC	2 cut(s)	397, 490
MlsI	TGGCCA	1 cut(s)	969
MluCI	AATT	7 cut(s)	30, 121, 385, 658, 814, 828, 1098
MluNI	TGGCCA	1 cut(s)	969
MmeI	TCCRAC	1 cut(s)	599
MnlI	CCTC	4 cut(s)	645, 987, 1119, 1145
Mox20I	TGGCCA	1 cut(s)	969
MscI	TGGCCA	1 cut(s)	969
MseI	TTAA	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	969
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	1 cut(s)	672
MspR9I	CCNGG	5 cut(s)	696, 858, 904, 1035, 1158
MunI	CAATTG	1 cut(s)	814
Mva1269I	GAATGC	1 cut(s)	341
MvaI	CCWGG	5 cut(s)	696, 858, 904, 1035, 1158
MwoI	GCNNNNNNNGC	2 cut(s)	675, 731
NdeII	GATC	4 cut(s)	10, 351, 603, 883
NlaIII	CATG	6 cut(s)	46, 446, 494, 938, 983, 1016
NlaIV	GGNNCC	4 cut(s)	258, 475, 824, 862
NmeAIII	GCCGAG	1 cut(s)	831
NmuCI	GTSAC	4 cut(s)	109, 167, 765, 941
NspI	RCATGY	1 cut(s)	494
PagI	TCATGA	2 cut(s)	442, 979
PaqCI	CACCTGC	1 cut(s)	523
PctI	GAATGC	1 cut(s)	341
PfeI	GAWTC	4 cut(s)	38, 128, 238, 622
PfoI	TCCNGGA	1 cut(s)	1156
PinAI	ACCGGT	1 cut(s)	671
PkrI	GCNGC	1 cut(s)	804
PmaCI	CACGTG	1 cut(s)	746
PmlI	CACGTG	1 cut(s)	746
Ppu21I	YACGTR	1 cut(s)	746
PpuMI	RGGWCCY	1 cut(s)	1154
PsiI	TTATAA	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	1154
Psp6I	CCWGG	5 cut(s)	694, 856, 902, 1033, 1156
PspCI	CACGTG	1 cut(s)	746
PspGI	CCWGG	5 cut(s)	694, 856, 902, 1033, 1156
PspN4I	GGNNCC	4 cut(s)	258, 475, 824, 862
PspPI	GGNCC	2 cut(s)	1027, 1154
PspPPI	RGGWCCY	1 cut(s)	1154
RsaI	GTAC	3 cut(s)	449, 842, 1123
RsaNI	GTAC	3 cut(s)	448, 841, 1122
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	1 cut(s)	803
Sau3AI	GATC	4 cut(s)	10, 351, 603, 883
Sau96I	GGNCC	2 cut(s)	1027, 1154
ScrFI	CCNGG	5 cut(s)	696, 858, 904, 1035, 1158
SduI	GDGCHC	2 cut(s)	397, 490
SfaNI	GCATC	1 cut(s)	1039
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	2 cut(s)	1027, 1154
SpeI	ACTAGT	1 cut(s)	1136
Sse9I	AATT	7 cut(s)	30, 121, 385, 658, 814, 828, 1098
SsiI	CCGC	2 cut(s)	174, 1025
SspMI	CTAG	4 cut(s)	56, 542, 1113, 1137
StyD4I	CCNGG	5 cut(s)	694, 856, 902, 1033, 1156
StyI	CCWWGG	1 cut(s)	1112
TaaI	ACNGT	2 cut(s)	151, 879
TaiI	ACGT	1 cut(s)	748
TaqI	TCGA	1 cut(s)	591
TasI	AATT	7 cut(s)	30, 121, 385, 658, 814, 828, 1098
TatI	WGTACW	1 cut(s)	840
TfiI	GAWTC	4 cut(s)	38, 128, 238, 622
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	2 cut(s)	882, 970
TseFI	GTSAC	4 cut(s)	109, 167, 765, 941
TseI	GCWGC	1 cut(s)	802
Tsp45I	GTSAC	4 cut(s)	109, 167, 765, 941
TspDTI	ATGAA	3 cut(s)	450, 515, 996
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	882, 970
VpaK11BI	GGWCC	2 cut(s)	1027, 1154
XagI	CCTNNNNNAGG	2 cut(s)	981, 1116
XapI	RAATTY	1 cut(s)	828
XceI	RCATGY	1 cut(s)	494
XmaJI	CCTAGG	1 cut(s)	1112
XspI	CTAG	4 cut(s)	56, 542, 1113, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.