Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000969

Physical Location & Seq

Genomic Coordinates Reverse (-)

31288457 .. 31288950

Gene Structure 494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g32340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCTAGTAAAGGTATCTATAATAACAAAGCTATTAGACACTTTCTACCAAATCCGAACATCACGGGTTTGTTCTTCCGGCCTTTGGATTTTTGCAGCATGTTGCACGTTACTTCCTAAATTTAAGGGTGGAACTGCATCAATTAAACGGTACCTAAGTGAATTGCATTTTCTCTCAGTTTCAGAAGAAGAAAGTAATGATTCTTCACAAAAGGTTCAGCAAGTAAACTTCATGACCATGTCTTTTAAAAGACCTACTATTCTTGCTGATGGAACTTATGCCACACATCATGCTGCATCTAGAATTGCTTTCTCTCCTCCTACCCTTTTTCAAGGATCCGTGGCATGTGGGAACTTGAGATCCCTGCTTCTCACTGGTGACTTTTTCCTTGGGATAGTTGTTGCATACCTTATGACCAAACTTGCCCTGAGATTAGAAGGGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005911 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030054 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_N Coatamer_beta_C Coatomer_b_Cpla

Protein Analysis

149

Amino Acids

16.33

Weight (kDa)

9.35

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31480 AT4G31480 AT4G31480 AT4G31480 AT4G31480 AT4G31480 AT4G31480 AT4G31480 AT4G31480 AT4G31490 AT4G31490 AT4G31490
fragaria_vesca	FvH4_4g12700 FvH4_4g12700 FvH4_4g12700 FvH4_6g37230 FvH4_6g37230 FvH4_6g37230
malus_domestica	MD04G1023700.v1.1 MD09G1159400.v1.1 MD13G1280100.v1.1 MD17G1145600.v1.1
prunus_persica	Prupe.3G018300_v2.0.a1 Prupe.3G018400_v2.0.a1
pyrus_communis	pycom04g02030 pycom09g07780 pycom09g18330 pycom13g29300 pycom15g32330 pycom15g32340 pycom17g13850
rosa_chinensis	RchiOBHm_Chr2g0149941 RchiOBHm_Chr2g0149961 RchiOBHm_Chr2g0149991 RchiOBHm_Chr4g0411591
rosa_laevigata	RLG00000008343 RLG00000020457 RLG00000020458
rosa_multiflora	Rmu_sc0001899.1_g000002 Rmu_sc0006550.1_g000008
rosa_roxburghii	Rroxscaffold_2G00097530 Rroxscaffold_2G00097540 Rroxscaffold_5G00356170
rosa_rugosa	Rorug02G0417300 Rorug04G0107800
rosa_samantha	Rh2AG476800 Rh2AG476900 Rh2AG477100 Rh2BG488500 Rh2BG488600 Rh2CG462500 Rh2CG462600 Rh2CG462800 Rh2DG497600 Rh2DG497700 Rh4AG169200 Rh4BG166100 Rh4CG180900 Rh4DG163500
rosa_wichuraiana	Rw2G038870 Rw2G038880 Rw2G038900 Rw4G014060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	150
AclWI	GGATC	3 cut(s)	330, 343, 354
AcsI	RAATTY	1 cut(s)	119
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgsI	TTSAA	1 cut(s)	332
AloI	GAACNNNNNNTCC	2 cut(s)	344, 376
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
AlwI	GGATC	3 cut(s)	330, 343, 354
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	2 cut(s)	95, 293
ApoI	RAATTY	1 cut(s)	119
Asp718I	GGTACC	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	389
BaeI	ACNNNNGTAYC	2 cut(s)	142, 175
BamHI	GGATCC	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	150
BarI	GAAGNNNNNNTAC	2 cut(s)	187, 219
BbvI	GCAGC	2 cut(s)	107, 280
BccI	CCATC	1 cut(s)	263
BfaI	CTAG	2 cut(s)	5, 300
BisI	GCNGC	2 cut(s)	96, 294
BlsI	GCNGC	2 cut(s)	97, 295
BmiI	GGNNCC	2 cut(s)	152, 337
BmsI	GCATC	2 cut(s)	146, 305
BpuEI	CTTGAG	1 cut(s)	376
BsaJI	CCNNGG	2 cut(s)	339, 388
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	379
BseDI	CCNNGG	2 cut(s)	339, 388
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	189, 419
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	1 cut(s)	306
BseXI	GCAGC	2 cut(s)	107, 280
BshFI	GGCC	1 cut(s)	81
BshNI	GGYRCC	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	84
BsnI	GGCC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	335, 359
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	2 cut(s)	188, 420
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	152, 337
BspPI	GGATC	3 cut(s)	330, 343, 354
BspT107I	GGYRCC	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	2 cut(s)	339, 388
BssMI	GATC	2 cut(s)	335, 359
BssT1I	CCWWGG	1 cut(s)	388
Bst4CI	ACNGT	1 cut(s)	150
BstDEI	CTNAG	3 cut(s)	155, 175, 428
BstDSI	CCRYGG	1 cut(s)	339
BstKTI	GATC	2 cut(s)	338, 362
BstMBI	GATC	2 cut(s)	335, 359
BstNSI	RCATGY	2 cut(s)	102, 348
BstV1I	GCAGC	2 cut(s)	107, 280
BstX2I	RGATCY	2 cut(s)	335, 359
BstYI	RGATCY	2 cut(s)	335, 359
BsuRI	GGCC	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	372
CciI	TCATGA	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	5 cut(s)	99, 232, 238, 290, 345
CviJI	RGCY	2 cut(s)	31, 81
CviKI_1	RGCY	2 cut(s)	31, 81
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	3 cut(s)	155, 175, 428
DpnI	GATC	2 cut(s)	337, 361
DpnII	GATC	2 cut(s)	335, 359
DraI	TTTAAA	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	5 cut(s)	102, 235, 241, 293, 348
FaiI	YATR	9 cut(s)	20, 100, 233, 239, 279, 291, 346, 406, 413
FatI	CATG	5 cut(s)	98, 231, 237, 289, 344
Fnu4HI	GCNGC	2 cut(s)	96, 294
Fsp4HI	GCNGC	2 cut(s)	96, 294
FspBI	CTAG	2 cut(s)	5, 300
GluI	GCNGC	2 cut(s)	96, 294
HaeIII	GGCC	1 cut(s)	81
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	5 cut(s)	102, 235, 241, 293, 348
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	56, 184
Hpy188III	TCNNGA	2 cut(s)	232, 300
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	6 cut(s)	95, 105, 137, 166, 296, 404
HpyF3I	CTNAG	3 cut(s)	155, 175, 428
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	5 cut(s)	102, 235, 241, 293, 348
KpnI	GGTACC	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	335, 359
LpnPI	CCDG	4 cut(s)	91, 360, 377, 440
Lsp1109I	GCAGC	2 cut(s)	107, 280
LweI	GCATC	2 cut(s)	146, 305
MaeI	CTAG	2 cut(s)	5, 300
MaeII	ACGT	1 cut(s)	107
MaeIII	GTNAC	2 cut(s)	108, 377
MalI	GATC	2 cut(s)	337, 361
MboI	GATC	2 cut(s)	335, 359
MboII	GAAGA	4 cut(s)	66, 195, 197, 200
MflI	RGATCY	2 cut(s)	335, 359
MluCI	AATT	4 cut(s)	119, 141, 161, 303
MnlI	CCTC	1 cut(s)	327
MseI	TTAA	3 cut(s)	123, 144, 246
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	1 cut(s)	78
NdeII	GATC	2 cut(s)	335, 359
NlaIII	CATG	5 cut(s)	102, 235, 241, 293, 348
NlaIV	GGNNCC	2 cut(s)	152, 337
NmuCI	GTSAC	1 cut(s)	377
NspI	RCATGY	2 cut(s)	102, 348
PagI	TCATGA	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	200
PflFI	GACNNNGTC	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	97, 295
PspN4I	GGNNCC	2 cut(s)	152, 337
PsuI	RGATCY	2 cut(s)	335, 359
PsyI	GACNNNGTC	1 cut(s)	238
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	3 cut(s)	123, 144, 246
SatI	GCNGC	2 cut(s)	96, 294
Sau3AI	GATC	2 cut(s)	335, 359
SetI	ASST	7 cut(s)	15, 33, 110, 156, 216, 256, 411
SfaNI	GCATC	2 cut(s)	146, 305
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	4 cut(s)	119, 141, 161, 303
SspMI	CTAG	2 cut(s)	5, 300
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	150
TaiI	ACGT	1 cut(s)	110
TasI	AATT	4 cut(s)	119, 141, 161, 303
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	3 cut(s)	123, 144, 246
Tru9I	TTAA	3 cut(s)	123, 144, 246
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	2 cut(s)	95, 293
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	220
TspGWI	ACGGA	1 cut(s)	328
TspRI	CASTG	1 cut(s)	379
Tth111I	GACNNNGTC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	119
XbaI	TCTAGA	1 cut(s)	299
XceI	RCATGY	2 cut(s)	102, 348
XspI	CTAG	2 cut(s)	5, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.