The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Adaptin_N | PF01602 | 18 - 466 | 1.5e-95 | Adaptin N terminal region |
| Cnd1 | PF12717 | 112 - 261 | 8.3e-06 | non-SMC mitotic condensation complex subunit 1 |
| Coatamer_beta_C | PF07718 | 669 - 807 | 1.5e-56 | Coatomer beta C-terminal region |
| Coatomer_b_Cpla | PF14806 | 813 - 940 | 3.3e-56 | Coatomer beta subunit appendage platform |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 996 |
| AccBSI | CCGCTC | 1 cut(s) | 2314 |
| AccII | CGCG | 2 cut(s) | 50, 572 |
| AccIII | TCCGGA | 1 cut(s) | 2769 |
| AciI | CCGC | 3 cut(s) | 48, 565, 2314 |
| AclI | AACGTT | 1 cut(s) | 149 |
| AclWI | GGATC | 6 cut(s) | 207, 545, 558, 1611, 1624, 1635 |
| AcoI | YGGCCR | 1 cut(s) | 2315 |
| AcsI | RAATTY | 7 cut(s) | 7, 415, 498, 2148, 2266, 2537, 2591 |
| AcuI | CTGAAG | 2 cut(s) | 1215, 1416 |
| AcvI | CACGTG | 1 cut(s) | 1343 |
| AcyI | GRCGYC | 1 cut(s) | 993 |
| AdeI | CACNNNGTG | 2 cut(s) | 491, 1571 |
| AfaI | GTAC | 1 cut(s) | 728 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 2806 |
| AflIII | ACRYGT | 2 cut(s) | 570, 1342 |
| AgsI | TTSAA | 9 cut(s) | 80, 139, 370, 1069, 1403, 1488, 2081, 2579, 2735 |
| AhlI | ACTAGT | 1 cut(s) | 1880 |
| AjnI | CCWGG | 2 cut(s) | 597, 2787 |
| AleI | CACNNNNGTG | 2 cut(s) | 1187, 1241 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1625, 1657 |
| Alw21I | GWGCWC | 3 cut(s) | 426, 1184, 1360 |
| Alw26I | GTCTC | 6 cut(s) | 646, 1209, 1786, 2249, 2381, 2414 |
| AlwI | GGATC | 6 cut(s) | 207, 545, 558, 1611, 1624, 1635 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 217, 1238, 1580 |
| Aor13HI | TCCGGA | 1 cut(s) | 2769 |
| AoxI | GGCC | 4 cut(s) | 375, 1140, 1798, 2315 |
| ApeKI | GCWGC | 8 cut(s) | 481, 661, 833, 836, 1574, 1906, 2129, 2675 |
| ApoI | RAATTY | 7 cut(s) | 7, 415, 498, 2148, 2266, 2537, 2591 |
| AspLEI | GCGC | 1 cut(s) | 514 |
| AspS9I | GGNCC | 1 cut(s) | 1723 |
| AsuHPI | GGTGA | 9 cut(s) | 160, 503, 665, 1127, 1670, 2224, 2306, 2731, 2822 |
| AvaII | GGWCC | 1 cut(s) | 1723 |
| BaeGI | GKGCMC | 2 cut(s) | 598, 973 |
| BamHI | GGATCC | 2 cut(s) | 550, 1616 |
| BanII | GRGCYC | 1 cut(s) | 1987 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 710, 742, 1468, 1500 |
| BbrPI | CACGTG | 1 cut(s) | 1343 |
| BbsI | GAAGAC | 4 cut(s) | 915, 1010, 1091, 1515 |
| Bbv12I | GWGCWC | 3 cut(s) | 426, 1184, 1360 |
| BbvCI | CCTCAGC | 1 cut(s) | 156 |
| BbvI | GCAGC | 8 cut(s) | 468, 648, 820, 823, 1586, 1893, 2116, 2687 |
| BccI | CCATC | 8 cut(s) | 562, 1195, 1544, 1738, 2504, 2648, 2650, 2741 |
| BceAI | ACGGC | 3 cut(s) | 376, 745, 1902 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1854, 1888 |
| BciT130I | CCWGG | 2 cut(s) | 599, 2789 |
| BciVI | GTATCC | 1 cut(s) | 2756 |
| BcoDI | GTCTC | 6 cut(s) | 646, 1209, 1786, 2249, 2381, 2414 |
| BcuI | ACTAGT | 1 cut(s) | 1880 |
| BfaI | CTAG | 6 cut(s) | 23, 978, 1010, 1103, 1881, 2346 |
| BfmI | CTRYAG | 4 cut(s) | 314, 662, 768, 2100 |
| BfuI | GTATCC | 1 cut(s) | 2756 |
| BisI | GCNGC | 9 cut(s) | 482, 662, 834, 837, 1575, 1907, 2130, 2315, 2676 |
| BlpI | GCTNAGC | 1 cut(s) | 561 |
| BlsI | GCNGC | 9 cut(s) | 483, 663, 835, 838, 1576, 1908, 2131, 2316, 2677 |
| Bme1390I | CCNGG | 2 cut(s) | 599, 2789 |
| Bme18I | GGWCC | 1 cut(s) | 1723 |
| BmgT120I | GGNCC | 1 cut(s) | 1723 |
| BmiI | GGNNCC | 3 cut(s) | 552, 1618, 2337 |
| BmrFI | CCNGG | 2 cut(s) | 599, 2789 |
| BmrI | ACTGGG | 1 cut(s) | 2171 |
| BmuI | ACTGGG | 1 cut(s) | 2171 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2393 |
| BpiI | GAAGAC | 4 cut(s) | 915, 1010, 1091, 1515 |
| BpmI | CTGGAG | 2 cut(s) | 1791, 2138 |
| Bpu10I | CCTNAGC | 2 cut(s) | 156, 1621 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 561 |
| BpuEI | CTTGAG | 3 cut(s) | 1043, 1657, 2810 |
| BsaAI | YACGTR | 1 cut(s) | 1343 |
| BsaHI | GRCGYC | 1 cut(s) | 993 |
| BsaI | GGTCTC | 3 cut(s) | 646, 2249, 2414 |
| BsaJI | CCNNGG | 8 cut(s) | 337, 597, 709, 1612, 2250, 2715, 2787, 2788 |
| BsaWI | WCCGGW | 2 cut(s) | 1038, 2769 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2320, 2350 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 2806 |
| Bse118I | RCCGGY | 1 cut(s) | 363 |
| Bse1I | ACTGG | 6 cut(s) | 1660, 1808, 2064, 2167, 2177, 2364 |
| Bse3DI | GCAATG | 3 cut(s) | 91, 117, 1228 |
| BseAI | TCCGGA | 1 cut(s) | 2769 |
| BseBI | CCWGG | 2 cut(s) | 599, 2789 |
| BseDI | CCNNGG | 8 cut(s) | 337, 597, 709, 1612, 2250, 2715, 2787, 2788 |
| BseGI | GGATG | 8 cut(s) | 430, 1819, 2014, 2131, 2659, 2716, 2752, 2766 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 2806 |
| BseMI | GCAATG | 3 cut(s) | 91, 117, 1228 |
| BseMII | CTCAG | 8 cut(s) | 170, 186, 293, 881, 1473, 1700, 2000, 2815 |
| BseNI | ACTGG | 6 cut(s) | 1660, 1808, 2064, 2167, 2177, 2364 |
| BseSI | GKGCMC | 2 cut(s) | 598, 973 |
| BseXI | GCAGC | 8 cut(s) | 468, 648, 820, 823, 1586, 1893, 2116, 2687 |
| BseYI | CCCAGC | 1 cut(s) | 788 |
| BsgI | GTGCAG | 4 cut(s) | 627, 1176, 1593, 2622 |
| Bsh1236I | CGCG | 2 cut(s) | 50, 572 |
| BshFI | GGCC | 4 cut(s) | 377, 1142, 1800, 2317 |
| BsiHKAI | GWGCWC | 3 cut(s) | 426, 1184, 1360 |
| BsiSI | CCGG | 5 cut(s) | 364, 700, 1039, 2006, 2770 |
| BslFI | GGGAC | 2 cut(s) | 805, 1567 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 2806 |
| BsmAI | GTCTC | 6 cut(s) | 646, 1209, 1786, 2249, 2381, 2414 |
| BsmBI | CGTCTC | 1 cut(s) | 2381 |
| BsmFI | GGGAC | 2 cut(s) | 805, 1567 |
| BsnI | GGCC | 4 cut(s) | 377, 1142, 1800, 2317 |
| Bso31I | GGTCTC | 3 cut(s) | 646, 2249, 2414 |
| Bsp1286I | GDGCHC | 6 cut(s) | 426, 598, 973, 1184, 1360, 1987 |
| Bsp13I | TCCGGA | 1 cut(s) | 2769 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 561 |
| BspACI | CCGC | 3 cut(s) | 48, 565, 2314 |
| BspANI | GGCC | 4 cut(s) | 377, 1142, 1800, 2317 |
| BspCNI | CTCAG | 8 cut(s) | 169, 187, 294, 880, 1472, 1701, 1999, 2814 |
| BspEI | TCCGGA | 1 cut(s) | 2769 |
| BspFNI | CGCG | 2 cut(s) | 50, 572 |
| BspLI | GGNNCC | 3 cut(s) | 552, 1618, 2337 |
| BspMAI | CTGCAG | 2 cut(s) | 666, 772 |
| BspPI | GGATC | 6 cut(s) | 207, 545, 558, 1611, 1624, 1635 |
| BspQI | GCTCTTC | 1 cut(s) | 590 |
| BspTNI | GGTCTC | 3 cut(s) | 646, 2249, 2414 |
| BsrBI | CCGCTC | 1 cut(s) | 2314 |
| BsrDI | GCAATG | 3 cut(s) | 91, 117, 1228 |
| BsrFI | RCCGGY | 1 cut(s) | 363 |
| BsrI | ACTGG | 6 cut(s) | 1660, 1808, 2064, 2167, 2177, 2364 |
| BssAI | RCCGGY | 1 cut(s) | 363 |
| BssECI | CCNNGG | 8 cut(s) | 337, 597, 709, 1612, 2250, 2715, 2787, 2788 |
| BssNI | GRCGYC | 1 cut(s) | 993 |
| BssT1I | CCWWGG | 3 cut(s) | 1612, 2250, 2715 |
| Bst2UI | CCWGG | 2 cut(s) | 599, 2789 |
| Bst6I | CTCTTC | 2 cut(s) | 590, 1713 |
| BstACI | GRCGYC | 1 cut(s) | 993 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1682 |
| BstBAI | YACGTR | 1 cut(s) | 1343 |
| BstC8I | GCNNGC | 3 cut(s) | 606, 1180, 1687 |
| BstDSI | CCRYGG | 2 cut(s) | 337, 709 |
| BstF5I | GGATG | 8 cut(s) | 430, 1819, 2014, 2131, 2659, 2716, 2752, 2766 |
| BstFNI | CGCG | 2 cut(s) | 50, 572 |
| BstHHI | GCGC | 1 cut(s) | 514 |
| BstMAI | GTCTC | 6 cut(s) | 646, 1209, 1786, 2249, 2381, 2414 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 458, 821, 830, 913, 1682, 2645 |
| BstNI | CCWGG | 2 cut(s) | 599, 2789 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2393 |
| BstSCI | CCNGG | 2 cut(s) | 597, 2787 |
| BstSFI | CTRYAG | 4 cut(s) | 314, 662, 768, 2100 |
| BstSLI | GKGCMC | 2 cut(s) | 598, 973 |
| BstUI | CGCG | 2 cut(s) | 50, 572 |
| BstV1I | GCAGC | 8 cut(s) | 468, 648, 820, 823, 1586, 1893, 2116, 2687 |
| BstV2I | GAAGAC | 4 cut(s) | 915, 1010, 1091, 1515 |
| BstX2I | RGATCY | 3 cut(s) | 550, 1616, 1640 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2162 |
| BstYI | RGATCY | 3 cut(s) | 550, 1616, 1640 |
| BsuI | GTATCC | 1 cut(s) | 2756 |
| BsuRI | GGCC | 4 cut(s) | 377, 1142, 1800, 2317 |
| BtgI | CCRYGG | 2 cut(s) | 337, 709 |
| BtsCI | GGATG | 8 cut(s) | 430, 1819, 2014, 2131, 2659, 2716, 2752, 2766 |
| BtsI | GCAGTG | 1 cut(s) | 2634 |
| Cac8I | GCNNGC | 3 cut(s) | 606, 1180, 1687 |
| CaiI | CAGNNNCTG | 3 cut(s) | 217, 1238, 1580 |
| CfoI | GCGC | 1 cut(s) | 514 |
| Cfr10I | RCCGGY | 1 cut(s) | 363 |
| Cfr13I | GGNCC | 1 cut(s) | 1723 |
| Csp6I | GTAC | 1 cut(s) | 727 |
| CviAII | CATG | 6 cut(s) | 580, 955, 1513, 1997, 2435, 2527 |
| CviQI | GTAC | 1 cut(s) | 727 |
| DraI | TTTAAA | 2 cut(s) | 2034, 2091 |
| DraIII | CACNNNGTG | 2 cut(s) | 491, 1571 |
| EaeI | YGGCCR | 1 cut(s) | 2315 |
| Eam1104I | CTCTTC | 2 cut(s) | 590, 1713 |
| EarI | CTCTTC | 2 cut(s) | 590, 1713 |
| Eco130I | CCWWGG | 3 cut(s) | 1612, 2250, 2715 |
| Eco24I | GRGCYC | 1 cut(s) | 1987 |
| Eco31I | GGTCTC | 3 cut(s) | 646, 2249, 2414 |
| Eco47I | GGWCC | 1 cut(s) | 1723 |
| Eco57I | CTGAAG | 2 cut(s) | 1215, 1416 |
| Eco72I | CACGTG | 1 cut(s) | 1343 |
| EcoRI | GAATTC | 2 cut(s) | 7, 2148 |
| EcoRII | CCWGG | 2 cut(s) | 597, 2787 |
| EcoT14I | CCWWGG | 3 cut(s) | 1612, 2250, 2715 |
| EcoT38I | GRGCYC | 1 cut(s) | 1987 |
| ErhI | CCWWGG | 3 cut(s) | 1612, 2250, 2715 |
| Esp3I | CGTCTC | 1 cut(s) | 2381 |
| FaeI | CATG | 6 cut(s) | 583, 958, 1516, 2000, 2438, 2530 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2243, 2275 |
| FaqI | GGGAC | 2 cut(s) | 805, 1567 |
| FatI | CATG | 6 cut(s) | 579, 954, 1512, 1996, 2434, 2526 |
| FauI | CCCGC | 1 cut(s) | 55 |
| FauNDI | CATATG | 3 cut(s) | 811, 1840, 2194 |
| Fnu4HI | GCNGC | 9 cut(s) | 482, 662, 834, 837, 1575, 1907, 2130, 2315, 2676 |
| FokI | GGATG | 8 cut(s) | 417, 1806, 2021, 2138, 2666, 2723, 2753, 2759 |
| FriOI | GRGCYC | 1 cut(s) | 1987 |
| Fsp4HI | GCNGC | 9 cut(s) | 482, 662, 834, 837, 1575, 1907, 2130, 2315, 2676 |
| FspBI | CTAG | 6 cut(s) | 23, 978, 1010, 1103, 1881, 2346 |
| GlaI | GCGC | 1 cut(s) | 513 |
| GluI | GCNGC | 9 cut(s) | 482, 662, 834, 837, 1575, 1907, 2130, 2315, 2676 |
| GsaI | CCCAGC | 1 cut(s) | 792 |
| GsuI | CTGGAG | 2 cut(s) | 1791, 2138 |
| HaeIII | GGCC | 4 cut(s) | 377, 1142, 1800, 2317 |
| HapII | CCGG | 5 cut(s) | 364, 700, 1039, 2006, 2770 |
| HhaI | GCGC | 1 cut(s) | 514 |
| Hin1I | GRCGYC | 1 cut(s) | 993 |
| Hin1II | CATG | 6 cut(s) | 583, 958, 1516, 2000, 2438, 2530 |
| Hin6I | GCGC | 1 cut(s) | 512 |
| HinP1I | GCGC | 1 cut(s) | 512 |
| HincII | GTYRAC | 2 cut(s) | 765, 2616 |
| HindII | GTYRAC | 2 cut(s) | 765, 2616 |
| HindIII | AAGCTT | 3 cut(s) | 887, 1700, 2753 |
| HinfI | GANTC | 9 cut(s) | 267, 1006, 1087, 1410, 1481, 1835, 2342, 2394, 2667 |
| HpaII | CCGG | 5 cut(s) | 364, 700, 1039, 2006, 2770 |
| HphI | GGTGA | 9 cut(s) | 160, 503, 665, 1127, 1670, 2224, 2306, 2731, 2822 |
| Hpy166II | GTNNAC | 4 cut(s) | 765, 1409, 1507, 2616 |
| Hpy8I | GTNNAC | 4 cut(s) | 765, 1409, 1507, 2616 |
| Hpy99I | CGWCG | 1 cut(s) | 544 |
| HpyCH4IV | ACGT | 4 cut(s) | 149, 993, 1342, 2095 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 458, 821, 830, 913, 1682, 2645 |
| HpySE526I | ACGT | 4 cut(s) | 149, 993, 1342, 2095 |
| Hsp92I | GRCGYC | 1 cut(s) | 993 |
| Hsp92II | CATG | 6 cut(s) | 583, 958, 1516, 2000, 2438, 2530 |
| HspAI | GCGC | 1 cut(s) | 512 |
| Kpn2I | TCCGGA | 1 cut(s) | 2769 |
| LguI | GCTCTTC | 1 cut(s) | 590 |
| LmnI | GCTCC | 6 cut(s) | 421, 544, 601, 2341, 2513, 2778 |
| Lsp1109I | GCAGC | 8 cut(s) | 468, 648, 820, 823, 1586, 1893, 2116, 2687 |
| MaeI | CTAG | 6 cut(s) | 23, 978, 1010, 1103, 1881, 2346 |
| MaeII | ACGT | 4 cut(s) | 149, 993, 1342, 2095 |
| MaeIII | GTNAC | 7 cut(s) | 343, 872, 1030, 1658, 2171, 2197, 2230 |
| MbiI | CCGCTC | 1 cut(s) | 2314 |
| MfeI | CAATTG | 1 cut(s) | 1824 |
| MflI | RGATCY | 3 cut(s) | 550, 1616, 1640 |
| MhlI | GDGCHC | 6 cut(s) | 426, 598, 973, 1184, 1360, 1987 |
| MluI | ACGCGT | 1 cut(s) | 570 |
| MlyI | GAGTC | 5 cut(s) | 276, 1000, 1081, 1404, 2403 |
| MmeI | TCCRAC | 1 cut(s) | 1351 |
| MroI | TCCGGA | 1 cut(s) | 2769 |
| MseI | TTAA | 9 cut(s) | 395, 612, 732, 1422, 2033, 2090, 2115, 2301, 2845 |
| MslI | CAYNNNNRTG | 6 cut(s) | 324, 1152, 1187, 1241, 1517, 2211 |
| MspI | CCGG | 5 cut(s) | 364, 700, 1039, 2006, 2770 |
| MspR9I | CCNGG | 2 cut(s) | 599, 2789 |
| MunI | CAATTG | 1 cut(s) | 1824 |
| MvaI | CCWGG | 2 cut(s) | 599, 2789 |
| MvnI | CGCG | 2 cut(s) | 50, 572 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 458, 821, 830, 913, 1682, 2645 |
| NdeI | CATATG | 3 cut(s) | 811, 1840, 2194 |
| NlaIII | CATG | 6 cut(s) | 583, 958, 1516, 2000, 2438, 2530 |
| NlaIV | GGNNCC | 3 cut(s) | 552, 1618, 2337 |
| NmeAIII | GCCGAG | 1 cut(s) | 403 |
| NmuCI | GTSAC | 4 cut(s) | 872, 1658, 2171, 2230 |
| OliI | CACNNNNGTG | 2 cut(s) | 1187, 1241 |
| PasI | CCCWGGG | 1 cut(s) | 2788 |
| PciSI | GCTCTTC | 1 cut(s) | 590 |
| PfeI | GAWTC | 4 cut(s) | 1481, 1835, 2342, 2667 |
| PflFI | GACNNNGTC | 1 cut(s) | 1519 |
| PkrI | GCNGC | 9 cut(s) | 483, 663, 835, 838, 1576, 1908, 2131, 2316, 2677 |
| PleI | GAGTC | 5 cut(s) | 275, 1000, 1081, 1404, 2402 |
| PmaCI | CACGTG | 1 cut(s) | 1343 |
| PmlI | CACGTG | 1 cut(s) | 1343 |
| PpsI | GAGTC | 5 cut(s) | 275, 1000, 1081, 1404, 2402 |
| Ppu21I | YACGTR | 1 cut(s) | 1343 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2393 |
| Psp1406I | AACGTT | 1 cut(s) | 149 |
| Psp6I | CCWGG | 2 cut(s) | 597, 2787 |
| PspCI | CACGTG | 1 cut(s) | 1343 |
| PspFI | CCCAGC | 1 cut(s) | 788 |
| PspGI | CCWGG | 2 cut(s) | 597, 2787 |
| PspN4I | GGNNCC | 3 cut(s) | 552, 1618, 2337 |
| PspPI | GGNCC | 1 cut(s) | 1723 |
| PstI | CTGCAG | 2 cut(s) | 666, 772 |
| PstNI | CAGNNNCTG | 3 cut(s) | 217, 1238, 1580 |
| PsuI | RGATCY | 3 cut(s) | 550, 1616, 1640 |
| PsyI | GACNNNGTC | 1 cut(s) | 1519 |
| RsaI | GTAC | 1 cut(s) | 728 |
| RsaNI | GTAC | 1 cut(s) | 727 |
| RseI | CAYNNNNRTG | 6 cut(s) | 324, 1152, 1187, 1241, 1517, 2211 |
| SapI | GCTCTTC | 1 cut(s) | 590 |
| SaqAI | TTAA | 9 cut(s) | 395, 612, 732, 1422, 2033, 2090, 2115, 2301, 2845 |
| SatI | GCNGC | 9 cut(s) | 482, 662, 834, 837, 1575, 1907, 2130, 2315, 2676 |
| Sau96I | GGNCC | 1 cut(s) | 1723 |
| SchI | GAGTC | 5 cut(s) | 276, 1000, 1081, 1404, 2403 |
| ScrFI | CCNGG | 2 cut(s) | 599, 2789 |
| SduI | GDGCHC | 6 cut(s) | 426, 598, 973, 1184, 1360, 1987 |
| SfcI | CTRYAG | 4 cut(s) | 314, 662, 768, 2100 |
| SinI | GGWCC | 1 cut(s) | 1723 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 324, 1152, 1187, 1241, 1517, 2211 |
| SmlI | CTYRAG | 3 cut(s) | 1022, 1636, 2825 |
| SmoI | CTYRAG | 3 cut(s) | 1022, 1636, 2825 |
| SpeI | ACTAGT | 1 cut(s) | 1880 |
| SsiI | CCGC | 3 cut(s) | 48, 565, 2314 |
| SspMI | CTAG | 6 cut(s) | 23, 978, 1010, 1103, 1881, 2346 |
| StyD4I | CCNGG | 2 cut(s) | 597, 2787 |
| StyI | CCWWGG | 3 cut(s) | 1612, 2250, 2715 |
| TaiI | ACGT | 4 cut(s) | 152, 996, 1345, 2098 |
| TaqI | TCGA | 5 cut(s) | 525, 539, 1269, 2067, 2245 |
| TauI | GCSGC | 1 cut(s) | 2317 |
| TfiI | GAWTC | 4 cut(s) | 1481, 1835, 2342, 2667 |
| Tru1I | TTAA | 9 cut(s) | 395, 612, 732, 1422, 2033, 2090, 2115, 2301, 2845 |
| Tru9I | TTAA | 9 cut(s) | 395, 612, 732, 1422, 2033, 2090, 2115, 2301, 2845 |
| TseFI | GTSAC | 4 cut(s) | 872, 1658, 2171, 2230 |
| TseI | GCWGC | 8 cut(s) | 481, 661, 833, 836, 1574, 1906, 2129, 2675 |
| Tsp45I | GTSAC | 4 cut(s) | 872, 1658, 2171, 2230 |
| TspGWI | ACGGA | 4 cut(s) | 326, 557, 703, 986 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1519 |
| VpaK11BI | GGWCC | 1 cut(s) | 1723 |
| XapI | RAATTY | 7 cut(s) | 7, 415, 498, 2148, 2266, 2537, 2591 |
| XbaI | TCTAGA | 1 cut(s) | 1009 |
| XspI | CTAG | 6 cut(s) | 23, 978, 1010, 1103, 1881, 2346 |
| ZraI | GACGTC | 1 cut(s) | 994 |