Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004448

Physical Location & Seq

Genomic Coordinates Forward (+)

15377158 .. 15379025

Gene Structure 1868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G31790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTTGTACATTATAGGGTTAGGTTTAGGAGATGAAAAAGATATAACCTTGAGAGGACTCGAGGCTGTTAAGAAATCACAGAAAGTATACATGGAAGCTTACACTTCTCTTTTGTCCTTTGGTCTCTCTGCTGATGGACTTTCCAATCTTGAAAAGTTCTATGGGAAACCAATTATACTTGCTGATAGAGAAATGGTGGAAGAAAAGGCTGGTGATATGATTGATGAAGCCATTGATAATGATGTCGCTTTTCTCGTTGTTGGTGATCCTTTCGGAGCTACAACGCATAGTGATCTTGTTGTTCGAGCTAAGACACTCGGTGTAAAAGTAGAGGTAGTGCACAATGCATCGGTGATGAATGCTGTTGGGATTTGTGGATTGCAGCTTTACCATTATGGAGAGACTGTTTCGATCCCATTCTTTACCGAGACTTGGAGACCTGATAGTTTTTATGAGAAGATCAAGAAGAACCGCTCTCTTGGACTTCACACTCTCTGTTTGCTAGATATCCGAGTGAAGGAGCCTACTTTTGAATCTCTATGCAGAGGAGGGAAGAAACAGTATGAACCGCCGAGGTATATGAGTGTTAATACAGCAATCGAGCAGCTTCTGGAAGTTGAGCAAAAGCATGGAGATTCTGTTTATGGTGAAGACACACAGTGTGTGGGCTTTGCCCGGCTTGGCTCTGAGGACCAGACGATAGTTGCAGGGACGATGAAGCAACTCGAAAGCGTTGATTTTGGAGCACCGTTGCATTGTCTTGTGATAGTAGGCGAGACTCATCCCGTGGAAGAAGAGATGTTAGAGTTTTACAAATACAAAAGTGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004164 GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0016740 GO:0016741 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

277

Amino Acids

30.79

Weight (kDa)

4.98

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TP_methylase	PF00590	1 - 242	4.9e-25	Tetrapyrrole (Corrin/Porphyrin) Methylases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31790 AT4G31790
fragaria_vesca	FvH4_2g38650 FvH4_2g38650 FvH4_2g38650 FvH4_2g38650
malus_domestica	MD08G1014100.v1.1 MD15G1013600.v1.1
prunus_persica	Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1
pyrus_communis	pycom08g01280 pycom15g01180
rosa_chinensis	RchiOBHm_Chr6g0302671 RchiOBHm_Chr7g0221331
rosa_laevigata	RLG00000002161 RLG00000011149
rosa_multiflora	Rmu_co8296669.1_g000001 Rmu_sc0005455.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238400 Rroxscaffold_7G00165450
rosa_rugosa	Rorug06G0316000 Rorug07G0202200
rosa_samantha	Rh6AG429300 Rh6BG473200 Rh6CG441600 Rh6DG428400 Rh7AG341400 Rh7BG332400 Rh7CG359300
rosa_wichuraiana	Rw6G037160 Rw7G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	474
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	2 cut(s)	472, 569
AclWI	GGATC	2 cut(s)	260, 406
AdeI	CACNNNGTG	3 cut(s)	320, 660, 662
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	432, 517
AgsI	TTSAA	2 cut(s)	152, 533
AluBI	AGCT	5 cut(s)	98, 278, 308, 385, 607
AluI	AGCT	5 cut(s)	98, 278, 308, 385, 607
Alw21I	GWGCWC	2 cut(s)	342, 748
Alw26I	GTCTC	5 cut(s)	128, 395, 422, 430, 770
Alw44I	GTGCAC	1 cut(s)	338
AlwI	GGATC	2 cut(s)	260, 406
AlwNI	CAGNNNCTG	1 cut(s)	610
Ama87I	CYCGRG	1 cut(s)	59
ApaLI	GTGCAC	1 cut(s)	338
ApeKI	GCWGC	2 cut(s)	382, 604
AspS9I	GGNCC	1 cut(s)	691
AsuC2I	CCSGG	1 cut(s)	676
AsuHPI	GGTGA	4 cut(s)	224, 275, 364, 659
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	691
BaeGI	GKGCMC	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	657
Bbv12I	GWGCWC	2 cut(s)	342, 748
BbvI	GCAGC	2 cut(s)	394, 616
BccI	CCATC	1 cut(s)	128
BcnI	CCSGG	1 cut(s)	676
BcoDI	GTCTC	5 cut(s)	128, 395, 422, 430, 770
BfaI	CTAG	1 cut(s)	503
BisI	GCNGC	2 cut(s)	383, 605
BlsI	GCNGC	2 cut(s)	384, 606
Bme1390I	CCNGG	1 cut(s)	676
Bme18I	GGWCC	1 cut(s)	691
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	691
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	1 cut(s)	676
BmsI	GCATC	1 cut(s)	356
BpiI	GAAGAC	1 cut(s)	657
BpuEI	CTTGAG	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	676
BsaI	GGTCTC	2 cut(s)	128, 430
BsaJI	CCNNGG	2 cut(s)	572, 786
BsaXI	ACNNNNNCTCC	4 cut(s)	390, 420, 624, 654
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 517
BseDI	CCNNGG	2 cut(s)	572, 786
BseGI	GGATG	1 cut(s)	781
BseLI	CCNNNNNNNGG	2 cut(s)	432, 517
BseMII	CTCAG	1 cut(s)	678
BseRI	GAGGAG	1 cut(s)	561
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	2 cut(s)	394, 616
BsiHKAI	GWGCWC	2 cut(s)	342, 748
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	676
BslFI	GGGAC	1 cut(s)	724
BslI	CCNNNNNNNGG	2 cut(s)	432, 517
BsmAI	GTCTC	5 cut(s)	128, 395, 422, 430, 770
BsmFI	GGGAC	1 cut(s)	724
BsmI	GAATGC	1 cut(s)	364
Bso31I	GGTCTC	2 cut(s)	128, 430
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	342, 748
Bsp1407I	TGTACA	1 cut(s)	6
Bsp143I	GATC	4 cut(s)	265, 292, 411, 459
BspACI	CCGC	2 cut(s)	472, 569
BspCNI	CTCAG	1 cut(s)	679
BspLI	GGNNCC	1 cut(s)	522
BspPI	GGATC	2 cut(s)	260, 406
BspTNI	GGTCTC	2 cut(s)	128, 430
BsrBI	CCGCTC	1 cut(s)	474
BsrGI	TGTACA	1 cut(s)	6
BssECI	CCNNGG	2 cut(s)	572, 786
BssMI	GATC	4 cut(s)	265, 292, 411, 459
BssNAI	GTATAC	1 cut(s)	88
Bst1107I	GTATAC	1 cut(s)	88
Bst4CI	ACNGT	4 cut(s)	406, 561, 660, 750
Bst6I	CTCTTC	1 cut(s)	789
BstAUI	TGTACA	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	309, 687
BstDSI	CCRYGG	1 cut(s)	786
BstF5I	GGATG	1 cut(s)	781
BstKTI	GATC	4 cut(s)	268, 295, 414, 462
BstMAI	GTCTC	5 cut(s)	128, 395, 422, 430, 770
BstMBI	GATC	4 cut(s)	265, 292, 411, 459
BstSCI	CCNGG	1 cut(s)	674
BstSLI	GKGCMC	1 cut(s)	342
BstV1I	GCAGC	2 cut(s)	394, 616
BstV2I	GAAGAC	1 cut(s)	657
BstZ17I	GTATAC	1 cut(s)	88
BtgI	CCRYGG	1 cut(s)	786
BtsCI	GGATG	1 cut(s)	781
BtsIMutI	CAGTG	1 cut(s)	665
CaiI	CAGNNNCTG	1 cut(s)	610
Cfr13I	GGNCC	1 cut(s)	691
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	2 cut(s)	91, 629
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	2 cut(s)	309, 687
DpnI	GATC	4 cut(s)	267, 294, 413, 461
DpnII	GATC	4 cut(s)	265, 292, 411, 459
DraIII	CACNNNGTG	3 cut(s)	320, 660, 662
Eam1104I	CTCTTC	1 cut(s)	789
EarI	CTCTTC	1 cut(s)	789
Eco31I	GGTCTC	2 cut(s)	128, 430
Eco32I	GATATC	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	691
Eco88I	CYCGRG	1 cut(s)	59
EcoRV	GATATC	1 cut(s)	508
EcoT22I	ATGCAT	1 cut(s)	349
FaeI	CATG	2 cut(s)	94, 632
FaqI	GGGAC	1 cut(s)	724
FatI	CATG	2 cut(s)	90, 628
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	2 cut(s)	383, 605
FokI	GGATG	1 cut(s)	768
Fsp4HI	GCNGC	2 cut(s)	383, 605
FspBI	CTAG	1 cut(s)	503
GluI	GCNGC	2 cut(s)	383, 605
HapII	CCGG	1 cut(s)	676
Hin1II	CATG	2 cut(s)	94, 632
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	4 cut(s)	57, 533, 635, 778
HpaII	CCGG	1 cut(s)	676
HphI	GGTGA	4 cut(s)	224, 275, 364, 659
Hpy166II	GTNNAC	2 cut(s)	88, 340
Hpy188I	TCNGA	3 cut(s)	275, 512, 688
Hpy188III	TCNNGA	3 cut(s)	149, 463, 611
Hpy8I	GTNNAC	2 cut(s)	88, 340
HpyAV	CCTTC	1 cut(s)	511
HpyCH4III	ACNGT	4 cut(s)	406, 561, 660, 750
HpyCH4V	TGCA	6 cut(s)	340, 347, 382, 543, 707, 754
HpyF3I	CTNAG	2 cut(s)	309, 687
Hsp92II	CATG	2 cut(s)	94, 632
Kzo9I	GATC	4 cut(s)	265, 292, 411, 459
LmnI	GCTCC	3 cut(s)	275, 520, 743
LpnPI	CCDG	6 cut(s)	195, 453, 596, 689, 693, 707
Lsp1109I	GCAGC	2 cut(s)	394, 616
LweI	GCATC	1 cut(s)	356
MaeI	CTAG	1 cut(s)	503
MalI	GATC	4 cut(s)	267, 294, 413, 461
MbiI	CCGCTC	1 cut(s)	474
MboI	GATC	4 cut(s)	265, 292, 411, 459
MboII	GAAGA	7 cut(s)	212, 469, 478, 565, 662, 803, 806
MhlI	GDGCHC	2 cut(s)	342, 748
MluCI	AATT	1 cut(s)	171
MlyI	GAGTC	2 cut(s)	51, 772
MnlI	CCTC	7 cut(s)	47, 55, 325, 539, 542, 567, 682
Mph1103I	ATGCAT	1 cut(s)	349
MseI	TTAA	2 cut(s)	69, 588
MspI	CCGG	1 cut(s)	676
MspR9I	CCNGG	1 cut(s)	676
Mva1269I	GAATGC	1 cut(s)	364
NciI	CCSGG	1 cut(s)	676
NdeII	GATC	4 cut(s)	265, 292, 411, 459
NlaIII	CATG	2 cut(s)	94, 632
NlaIV	GGNNCC	1 cut(s)	522
NmeAIII	GCCGAG	1 cut(s)	597
NsiI	ATGCAT	1 cut(s)	349
PaeR7I	CTCGAG	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	2 cut(s)	533, 635
PkrI	GCNGC	2 cut(s)	384, 606
PleI	GAGTC	2 cut(s)	51, 772
PpsI	GAGTC	2 cut(s)	51, 772
PspN4I	GGNNCC	1 cut(s)	522
PspPI	GGNCC	1 cut(s)	691
PspXI	VCTCGAGB	1 cut(s)	59
PstNI	CAGNNNCTG	1 cut(s)	610
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	2 cut(s)	69, 588
SatI	GCNGC	2 cut(s)	383, 605
Sau3AI	GATC	4 cut(s)	265, 292, 411, 459
Sau96I	GGNCC	1 cut(s)	691
SchI	GAGTC	2 cut(s)	51, 772
ScrFI	CCNGG	1 cut(s)	676
SduI	GDGCHC	2 cut(s)	342, 748
SfaNI	GCATC	1 cut(s)	356
Sfr274I	CTCGAG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	691
SlaI	CTCGAG	1 cut(s)	59
SmlI	CTYRAG	2 cut(s)	49, 59
SmoI	CTYRAG	2 cut(s)	49, 59
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	2 cut(s)	472, 569
SspMI	CTAG	1 cut(s)	503
StyD4I	CCNGG	1 cut(s)	674
TaaI	ACNGT	4 cut(s)	406, 561, 660, 750
TaqI	TCGA	5 cut(s)	60, 304, 410, 600, 726
TasI	AATT	1 cut(s)	171
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	2 cut(s)	533, 635
Tru1I	TTAA	2 cut(s)	69, 588
Tru9I	TTAA	2 cut(s)	69, 588
TscAI	CASTG	1 cut(s)	665
TseI	GCWGC	2 cut(s)	382, 604
TspDTI	ATGAA	5 cut(s)	48, 240, 371, 579, 731
TspRI	CASTG	1 cut(s)	665
VneI	GTGCAC	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	691
XhoI	CTCGAG	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	503
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.