Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004448

Physical Location & Seq

Genomic Coordinates Forward (+)

943973 .. 945344

Gene Structure 1372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g01280.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGTTGTACATAGTAGGACTGGGATTAGGGGACGAGAAAGACATAACTCTGAGAGGATTAGAGGCTGTGAAGAAATGCGACAAGATTTTCATCGAAGCCTACACTTCCCTCCTCTCCTTCGGCATCTCTTCCGACGGCCTCTCCACTCTTGAAAAACTGTACGGAAAACCAGTGACACTTGCAGATAGAGAAACTGTGGAGGAAAGGGCCGATCAAATTCTAACTGCCGCCGCTGCTTGCGACGTCGCTTTCCTTGTCGTCGGCGATCCTTTTGGAGCTACGACACACACTGATCTTGTGGTTCGAGCCAAGAAGTTGGGGATTGATGTCAAGGTGGTGCACAATGCGTCGGTGATGAATGCAGTTGGAGCCTGTGGATTACAACTCTACCACTACGGTGAGACAGTTTCGATACCATTCTTCACCGAGACATGGAGGCCGGATAGCTTTTATGAGAAGATTCAGAAAAATCGTGCGCTTGGGCTGCATACGCTATGCTTGTTAGATATACGCGTGAAGGAACCAACTCTGGAATCTTTGTGCAGAGGAAAGAAGCAGTATGAACCGCCTAGATATATGTCGATAAACACTGCAATTGAGCAGCTTCTGGAGGTTGAGCACAATCGAGGAGAATCTGCATATAATGAAGACACGATGTGTGTTGGGCTTGCTCGGCTGGGAAGTGAGGATCGATCAGAAGATCGTTTCTGGTACGATGAGGCAACTGCAGTCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004164 GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0016740 GO:0016741 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

246

Amino Acids

27.18

Weight (kDa)

5.06

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31790 AT4G31790
fragaria_vesca	FvH4_2g38650 FvH4_2g38650 FvH4_2g38650 FvH4_2g38650
malus_domestica	MD08G1014100.v1.1 MD15G1013600.v1.1
prunus_persica	Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1
pyrus_communis	pycom08g01280 pycom15g01180
rosa_chinensis	RchiOBHm_Chr6g0302671 RchiOBHm_Chr7g0221331
rosa_laevigata	RLG00000002161 RLG00000011149
rosa_multiflora	Rmu_co8296669.1_g000001 Rmu_sc0005455.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238400 Rroxscaffold_7G00165450
rosa_rugosa	Rorug06G0316000 Rorug07G0202200
rosa_samantha	Rh6AG429300 Rh6BG473200 Rh6CG441600 Rh6DG428400 Rh7AG341400 Rh7BG332400 Rh7CG359300
rosa_wichuraiana	Rw6G037160 Rw7G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	246
AccII	CGCG	1 cut(s)	513
AciI	CCGC	3 cut(s)	228, 231, 566
AclWI	GGATC	2 cut(s)	260, 696
AcsI	RAATTY	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	243
AdeI	CACNNNGTG	1 cut(s)	657
AfaI	GTAC	3 cut(s)	8, 161, 713
AfiI	CCNNNNNNNGG	1 cut(s)	432
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	1 cut(s)	152
AleI	CACNNNNGTG	1 cut(s)	396
AluBI	AGCT	3 cut(s)	278, 447, 604
AluI	AGCT	3 cut(s)	278, 447, 604
Alw21I	GWGCWC	2 cut(s)	342, 621
Alw26I	GTCTC	2 cut(s)	395, 422
Alw44I	GTGCAC	1 cut(s)	338
AlwI	GGATC	2 cut(s)	260, 696
AlwNI	CAGNNNCTG	1 cut(s)	607
AoxI	GGCC	3 cut(s)	136, 207, 437
ApaLI	GTGCAC	1 cut(s)	338
ApeKI	GCWGC	3 cut(s)	233, 484, 601
ApoI	RAATTY	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	3 cut(s)	364, 410, 415
BaeGI	GKGCMC	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	654
Bbv12I	GWGCWC	2 cut(s)	342, 621
BbvI	GCAGC	3 cut(s)	220, 471, 613
BceAI	ACGGC	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	395, 422
BfaI	CTAG	1 cut(s)	570
BfmI	CTRYAG	1 cut(s)	726
BisI	GCNGC	5 cut(s)	228, 231, 234, 485, 602
BlsI	GCNGC	5 cut(s)	229, 232, 235, 486, 603
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	2 cut(s)	370, 522
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	29
BpiI	GAAGAC	1 cut(s)	654
BpmI	CTGGAG	1 cut(s)	629
Bsa29I	ATCGAT	1 cut(s)	691
BsaBI	GATNNNNATC	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	432
Bse1I	ACTGG	2 cut(s)	24, 170
Bse8I	GATNNNNATC	1 cut(s)	89
BseCI	ATCGAT	1 cut(s)	691
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	2 cut(s)	24, 170
BseRI	GAGGAG	2 cut(s)	101, 642
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	3 cut(s)	220, 471, 613
BseYI	CCCAGC	1 cut(s)	676
BsgI	GTGCAG	1 cut(s)	562
Bsh1236I	CGCG	1 cut(s)	513
BshFI	GGCC	3 cut(s)	138, 209, 439
BshVI	ATCGAT	1 cut(s)	691
BsiHKAI	GWGCWC	2 cut(s)	342, 621
BsiSI	CCGG	1 cut(s)	440
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	432
BsmAI	GTCTC	2 cut(s)	395, 422
BsmFI	GGGAC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	3 cut(s)	138, 209, 439
Bsp1286I	GDGCHC	2 cut(s)	342, 621
Bsp1407I	TGTACA	1 cut(s)	6
Bsp143I	GATC	6 cut(s)	211, 265, 292, 688, 692, 700
BspACI	CCGC	3 cut(s)	228, 231, 566
BspANI	GGCC	3 cut(s)	138, 209, 439
BspCNI	CTCAG	1 cut(s)	42
BspDI	ATCGAT	1 cut(s)	691
BspFNI	CGCG	1 cut(s)	513
BspLI	GGNNCC	2 cut(s)	370, 522
BspMAI	CTGCAG	1 cut(s)	730
BspPI	GGATC	2 cut(s)	260, 696
BsrGI	TGTACA	1 cut(s)	6
BsrI	ACTGG	2 cut(s)	24, 170
BssMI	GATC	6 cut(s)	211, 265, 292, 688, 692, 700
BssNI	GRCGYC	1 cut(s)	243
Bst4CI	ACNGT	4 cut(s)	159, 196, 398, 406
Bst6I	CTCTTC	1 cut(s)	133
BstACI	GRCGYC	1 cut(s)	243
BstAUI	TGTACA	1 cut(s)	6
BstC8I	GCNNGC	2 cut(s)	238, 669
BstDEI	CTNAG	1 cut(s)	50
BstFNI	CGCG	1 cut(s)	513
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	6 cut(s)	214, 268, 295, 691, 695, 703
BstMAI	GTCTC	2 cut(s)	395, 422
BstMBI	GATC	6 cut(s)	211, 265, 292, 688, 692, 700
BstMWI	GCNNNNNNNGC	5 cut(s)	233, 368, 484, 490, 673
BstSFI	CTRYAG	1 cut(s)	726
BstSLI	GKGCMC	1 cut(s)	342
BstUI	CGCG	1 cut(s)	513
BstV1I	GCAGC	3 cut(s)	220, 471, 613
BstV2I	GAAGAC	1 cut(s)	654
BstXI	CCANNNNNNTGG	1 cut(s)	316
Bsu15I	ATCGAT	1 cut(s)	691
BsuRI	GGCC	3 cut(s)	138, 209, 439
BsuTUI	ATCGAT	1 cut(s)	691
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	3 cut(s)	177, 288, 588
Cac8I	GCNNGC	2 cut(s)	238, 669
CaiI	CAGNNNCTG	1 cut(s)	607
CfoI	GCGC	1 cut(s)	478
Cfr13I	GGNCC	1 cut(s)	207
ClaI	ATCGAT	1 cut(s)	691
CseI	GACGC	1 cut(s)	336
Csp6I	GTAC	3 cut(s)	7, 160, 712
CviAII	CATG	1 cut(s)	432
CviQI	GTAC	3 cut(s)	7, 160, 712
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	6 cut(s)	213, 267, 294, 690, 694, 702
DpnII	GATC	6 cut(s)	211, 265, 292, 688, 692, 700
DraIII	CACNNNGTG	1 cut(s)	657
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
FaeI	CATG	1 cut(s)	435
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	1 cut(s)	431
Fnu4HI	GCNGC	5 cut(s)	228, 231, 234, 485, 602
Fsp4HI	GCNGC	5 cut(s)	228, 231, 234, 485, 602
FspBI	CTAG	1 cut(s)	570
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	5 cut(s)	228, 231, 234, 485, 602
GsaI	CCCAGC	1 cut(s)	680
GsuI	CTGGAG	1 cut(s)	629
HaeIII	GGCC	3 cut(s)	138, 209, 439
HapII	CCGG	1 cut(s)	440
HgaI	GACGC	1 cut(s)	336
HhaI	GCGC	1 cut(s)	478
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	1 cut(s)	435
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HinfI	GANTC	3 cut(s)	460, 533, 632
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	3 cut(s)	364, 410, 415
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	4 cut(s)	51, 133, 465, 697
Hpy188III	TCNNGA	3 cut(s)	149, 530, 608
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	5 cut(s)	137, 245, 248, 263, 352
HpyAV	CCTTC	2 cut(s)	127, 511
HpyCH4III	ACNGT	4 cut(s)	159, 196, 398, 406
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	8 cut(s)	182, 340, 362, 487, 543, 593, 638, 728
HpyF10VI	GCNNNNNNNGC	5 cut(s)	233, 368, 484, 490, 673
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	1 cut(s)	435
HspAI	GCGC	1 cut(s)	476
Kzo9I	GATC	6 cut(s)	211, 265, 292, 688, 692, 700
LmnI	GCTCC	2 cut(s)	275, 368
LpnPI	CCDG	8 cut(s)	5, 183, 385, 453, 515, 593, 662, 694
Lsp1109I	GCAGC	3 cut(s)	220, 471, 613
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	1 cut(s)	570
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	6 cut(s)	213, 267, 294, 690, 694, 702
MboI	GATC	6 cut(s)	211, 265, 292, 688, 692, 700
MboII	GAAGA	6 cut(s)	82, 120, 412, 469, 659, 710
MfeI	CAATTG	1 cut(s)	594
MhlI	GDGCHC	2 cut(s)	342, 621
MluCI	AATT	2 cut(s)	216, 594
MluI	ACGCGT	1 cut(s)	511
MmeI	TCCRAC	2 cut(s)	156, 346
MslI	CAYNNNNRTG	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	1 cut(s)	440
MunI	CAATTG	1 cut(s)	594
Mva1269I	GAATGC	1 cut(s)	364
MvnI	CGCG	1 cut(s)	513
MwoI	GCNNNNNNNGC	5 cut(s)	233, 368, 484, 490, 673
NdeII	GATC	6 cut(s)	211, 265, 292, 688, 692, 700
NlaIII	CATG	1 cut(s)	435
NlaIV	GGNNCC	2 cut(s)	370, 522
NmeAIII	GCCGAG	1 cut(s)	652
NmuCI	GTSAC	1 cut(s)	172
OliI	CACNNNNGTG	1 cut(s)	396
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	3 cut(s)	460, 533, 632
PkrI	GCNGC	5 cut(s)	229, 232, 235, 486, 603
PspFI	CCCAGC	1 cut(s)	676
PspN4I	GGNNCC	2 cut(s)	370, 522
PspPI	GGNCC	1 cut(s)	207
PstI	CTGCAG	1 cut(s)	730
PstNI	CAGNNNCTG	1 cut(s)	607
RsaI	GTAC	3 cut(s)	8, 161, 713
RsaNI	GTAC	3 cut(s)	7, 160, 712
RseI	CAYNNNNRTG	1 cut(s)	396
SatI	GCNGC	5 cut(s)	228, 231, 234, 485, 602
Sau3AI	GATC	6 cut(s)	211, 265, 292, 688, 692, 700
Sau96I	GGNCC	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	342, 621
SetI	ASST	6 cut(s)	246, 280, 336, 449, 606, 615
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	1 cut(s)	726
SmiMI	CAYNNNNRTG	1 cut(s)	396
Sse9I	AATT	2 cut(s)	216, 594
SsiI	CCGC	3 cut(s)	228, 231, 566
SspMI	CTAG	1 cut(s)	570
TaaI	ACNGT	4 cut(s)	159, 196, 398, 406
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	6 cut(s)	93, 304, 410, 581, 625, 691
TasI	AATT	2 cut(s)	216, 594
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	2 cut(s)	230, 233
TfiI	GAWTC	3 cut(s)	460, 533, 632
TscAI	CASTG	3 cut(s)	177, 295, 595
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	3 cut(s)	233, 484, 601
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	4 cut(s)	79, 371, 576, 660
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	3 cut(s)	177, 295, 595
VneI	GTGCAC	1 cut(s)	338
XapI	RAATTY	1 cut(s)	216
XspI	CTAG	1 cut(s)	570
ZraI	GACGTC	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.