Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8296669.1

Orthogroup ID

OG0004448

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 884

Gene Structure 883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8296669.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 431 bp

atagagaaaccgtggaggaaaaggccgatgaaattttaagtgcagctgctgattctgacgtggcttttcttgtagttggggatccttttggagctacaactcacactgatcttgtagttcgtgctaagaagttggggattgatgtcaaagtggtgcataatgcatcggttatgaatgctgttggagtctgtggcttacagctctaccactatggagagacagtttcgataccattctttaccgatacatggagacctgatagcttttatgagaagattcagaaaaatcgtgggcttggactacatactctctgcttgttagatatacgcgtgaaagaacccaccctggaatccttatgcagaggaaagaagcagtatgaaccacctagatatatgtcagtaaacactgcaattgaacagcttttggaggtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004164 GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0016740 GO:0016741 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

143

Amino Acids

15.94

Weight (kDa)

5.55

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31790 AT4G31790
fragaria_vesca	FvH4_2g38650 FvH4_2g38650 FvH4_2g38650 FvH4_2g38650
malus_domestica	MD08G1014100.v1.1 MD15G1013600.v1.1
prunus_persica	Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1
pyrus_communis	pycom08g01280 pycom15g01180
rosa_chinensis	RchiOBHm_Chr6g0302671 RchiOBHm_Chr7g0221331
rosa_laevigata	RLG00000002161 RLG00000011149
rosa_multiflora	Rmu_co8296669.1_g000001 Rmu_sc0005455.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238400 Rroxscaffold_7G00165450
rosa_rugosa	Rorug06G0316000 Rorug07G0202200
rosa_samantha	Rh6AG429300 Rh6BG473200 Rh6CG441600 Rh6DG428400 Rh7AG341400 Rh7BG332400 Rh7CG359300
rosa_wichuraiana	Rw6G037160 Rw7G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	329
AclWI	GGATC	2 cut(s)	76, 89
AcsI	RAATTY	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	1 cut(s)	415
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	344
AluBI	AGCT	5 cut(s)	46, 94, 201, 263, 420
AluI	AGCT	5 cut(s)	46, 94, 201, 263, 420
Alw26I	GTCTC	2 cut(s)	211, 246
AlwI	GGATC	2 cut(s)	76, 89
AlwNI	CAGNNNCTG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	2 cut(s)	43, 46
ApoI	RAATTY	1 cut(s)	32
BamHI	GGATCC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	33, 55
BciT130I	CCWGG	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	211, 246
BfaI	CTAG	1 cut(s)	386
BisI	GCNGC	2 cut(s)	44, 47
BlsI	GCNGC	2 cut(s)	45, 48
Bme1390I	CCNGG	1 cut(s)	346
BmgBI	CACGTC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	11, 344
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	346
BseDI	CCNNGG	2 cut(s)	11, 344
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	33, 55
BsgI	GTGCAG	1 cut(s)	62
Bsh1236I	CGCG	1 cut(s)	329
BshFI	GGCC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	211, 246
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	25
Bso31I	GGTCTC	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	81, 108
BspANI	GGCC	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	329
BspLI	GGNNCC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	76, 89
BspTNI	GGTCTC	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	11, 344
BssMI	GATC	2 cut(s)	81, 108
Bst2UI	CCWGG	1 cut(s)	346
Bst4CI	ACNGT	2 cut(s)	12, 222
BstDEI	CTNAG	1 cut(s)	125
BstDSI	CCRYGG	1 cut(s)	11
BstFNI	CGCG	1 cut(s)	329
BstKTI	GATC	2 cut(s)	84, 111
BstMAI	GTCTC	2 cut(s)	211, 246
BstMBI	GATC	2 cut(s)	81, 108
BstNI	CCWGG	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	344
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	2 cut(s)	33, 55
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	25
BtgI	CCRYGG	1 cut(s)	11
BtrI	CACGTC	1 cut(s)	60
BtsI	GCAGTG	1 cut(s)	404
BtsIMutI	CAGTG	2 cut(s)	104, 404
CaiI	CAGNNNCTG	1 cut(s)	49
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	9 cut(s)	25, 46, 64, 94, 194, 201, 263, 294, 420
CviKI_1	RGCY	9 cut(s)	25, 46, 64, 94, 194, 201, 263, 294, 420
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	2 cut(s)	83, 110
DpnII	GATC	2 cut(s)	81, 108
Eco31I	GGTCTC	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	344
EcoT22I	ATGCAT	1 cut(s)	165
FaeI	CATG	1 cut(s)	251
FatI	CATG	1 cut(s)	247
Fnu4HI	GCNGC	2 cut(s)	44, 47
Fsp4HI	GCNGC	2 cut(s)	44, 47
FspBI	CTAG	1 cut(s)	386
GluI	GCNGC	2 cut(s)	44, 47
HaeIII	GGCC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	251
HinfI	GANTC	4 cut(s)	52, 185, 276, 349
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	2 cut(s)	57, 281
Hpy8I	GTNNAC	1 cut(s)	402
HpyCH4III	ACNGT	2 cut(s)	12, 222
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	5 cut(s)	43, 156, 163, 359, 409
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	251
Kzo9I	GATC	2 cut(s)	81, 108
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	3 cut(s)	269, 331, 358
Lsp1109I	GCAGC	2 cut(s)	33, 55
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	1 cut(s)	59
MalI	GATC	2 cut(s)	83, 110
MboI	GATC	2 cut(s)	81, 108
MboII	GAAGA	1 cut(s)	285
MfeI	CAATTG	1 cut(s)	410
MflI	RGATCY	1 cut(s)	81
MluCI	AATT	2 cut(s)	32, 410
MluI	ACGCGT	1 cut(s)	327
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	3 cut(s)	9, 355, 420
Mph1103I	ATGCAT	1 cut(s)	165
MseI	TTAA	1 cut(s)	37
MspA1I	CMGCKG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	346
MunI	CAATTG	1 cut(s)	410
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	346
MvnI	CGCG	1 cut(s)	329
NdeII	GATC	2 cut(s)	81, 108
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	1 cut(s)	83
NsiI	ATGCAT	1 cut(s)	165
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	3 cut(s)	52, 276, 349
PkrI	GCNGC	2 cut(s)	45, 48
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	83
PstNI	CAGNNNCTG	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	81
PvuII	CAGCTG	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	37
SatI	GCNGC	2 cut(s)	44, 47
Sau3AI	GATC	2 cut(s)	81, 108
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	346
SetI	ASST	9 cut(s)	48, 62, 96, 203, 258, 265, 387, 422, 431
SfaNI	GCATC	1 cut(s)	172
Sse9I	AATT	2 cut(s)	32, 410
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	1 cut(s)	344
TaaI	ACNGT	2 cut(s)	12, 222
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	1 cut(s)	226
TasI	AATT	2 cut(s)	32, 410
TfiI	GAWTC	3 cut(s)	52, 276, 349
Tru1I	TTAA	1 cut(s)	37
Tru9I	TTAA	1 cut(s)	37
TscAI	CASTG	2 cut(s)	111, 411
TseI	GCWGC	2 cut(s)	43, 46
TspDTI	ATGAA	3 cut(s)	44, 187, 392
TspRI	CASTG	2 cut(s)	111, 411
XapI	RAATTY	1 cut(s)	32
XspI	CTAG	1 cut(s)	386
Zsp2I	ATGCAT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.