Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004448

Physical Location & Seq

Genomic Coordinates Forward (+)

46761010 .. 46761348

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0316000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGAGGGGTGGTAAAGCTGACCATTCCACATGAAGTCCACATGGCATGTAGCCACGGGCCAATGGAATCGGCTCCCACTTTATCCTCCACCCACATGGCCATGCCAACCCCAATCAATGACATCCACGTGGGACCGTGCGGTCACATGGACTGTTGCCGTTCCCCTCCTCGAGATCCAACGATCCTGGATCCACTCTTAGCAACCGAAAGGCTCATCCCCGCCGTCCAATATCGGTCTTTCAGTAGCAGGGGATTTTTGCTGTCCCTGGTTTGTCCCCTTCCCGTTGGGCACCAGACTGCACGGTGTTCCTCGGGTCAGTGGCACCCGGATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004164 GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0016740 GO:0016741 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

112

Amino Acids

12.1

Weight (kDa)

6.68

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31790 AT4G31790
fragaria_vesca	FvH4_2g38650 FvH4_2g38650 FvH4_2g38650 FvH4_2g38650
malus_domestica	MD08G1014100.v1.1 MD15G1013600.v1.1
prunus_persica	Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1
pyrus_communis	pycom08g01280 pycom15g01180
rosa_chinensis	RchiOBHm_Chr6g0302671 RchiOBHm_Chr7g0221331
rosa_laevigata	RLG00000002161 RLG00000011149
rosa_multiflora	Rmu_co8296669.1_g000001 Rmu_sc0005455.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238400 Rroxscaffold_7G00165450
rosa_rugosa	Rorug06G0316000 Rorug07G0202200
rosa_samantha	Rh6AG429300 Rh6BG473200 Rh6CG441600 Rh6DG428400 Rh7AG341400 Rh7BG332400 Rh7CG359300
rosa_wichuraiana	Rw6G037160 Rw7G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	141
AccB1I	GGYRCC	2 cut(s)	291, 324
AciI	CCGC	2 cut(s)	141, 222
AclWI	GGATC	4 cut(s)	170, 178, 185, 198
AcoI	YGGCCR	1 cut(s)	99
AcvI	CACGTG	1 cut(s)	130
AjnI	CCWGG	2 cut(s)	186, 267
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
AlwI	GGATC	4 cut(s)	170, 178, 185, 198
Ama87I	CYCGRG	2 cut(s)	171, 313
AoxI	GGCC	2 cut(s)	59, 99
AspS9I	GGNCC	2 cut(s)	59, 134
AsuC2I	CCSGG	1 cut(s)	329
AvaI	CYCGRG	2 cut(s)	171, 313
AvaII	GGWCC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	294
BalI	TGGCCA	1 cut(s)	101
BamHI	GGATCC	1 cut(s)	190
BanI	GGYRCC	2 cut(s)	291, 324
BbrPI	CACGTG	1 cut(s)	130
BceAI	ACGGC	2 cut(s)	144, 209
BciT130I	CCWGG	2 cut(s)	188, 269
BcnI	CCSGG	1 cut(s)	329
Bme1390I	CCNGG	3 cut(s)	188, 269, 329
Bme18I	GGWCC	1 cut(s)	134
BmeT110I	CYCGRG	2 cut(s)	171, 313
BmgT120I	GGNCC	2 cut(s)	59, 134
BmiI	GGNNCC	5 cut(s)	75, 135, 192, 293, 326
BmrFI	CCNGG	3 cut(s)	188, 269, 329
BpuMI	CCSGG	1 cut(s)	329
BsaAI	YACGTR	1 cut(s)	130
BsaJI	CCNNGG	3 cut(s)	55, 267, 312
BsaXI	ACNNNNNCTCC	1 cut(s)	27
BseBI	CCWGG	2 cut(s)	188, 269
BseDI	CCNNGG	3 cut(s)	55, 267, 312
BseGI	GGATG	2 cut(s)	123, 216
BseRI	GAGGAG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	294
BsgI	GTGCAG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	61, 101
BshNI	GGYRCC	2 cut(s)	291, 324
BsiHKCI	CYCGRG	2 cut(s)	171, 313
BsiSI	CCGG	1 cut(s)	329
BslFI	GGGAC	3 cut(s)	147, 250, 261
BsmFI	GGGAC	3 cut(s)	147, 250, 261
BsnI	GGCC	2 cut(s)	61, 101
BsoBI	CYCGRG	2 cut(s)	171, 313
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	4 cut(s)	175, 183, 190, 331
BspACI	CCGC	2 cut(s)	141, 222
BspANI	GGCC	2 cut(s)	61, 101
BspLI	GGNNCC	5 cut(s)	75, 135, 192, 293, 326
BspPI	GGATC	4 cut(s)	170, 178, 185, 198
BspT107I	GGYRCC	2 cut(s)	291, 324
BssECI	CCNNGG	3 cut(s)	55, 267, 312
BssMI	GATC	4 cut(s)	175, 183, 190, 331
Bst2UI	CCWGG	2 cut(s)	188, 269
Bst4CI	ACNGT	3 cut(s)	138, 155, 306
BstBAI	YACGTR	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	199
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	123, 216
BstKTI	GATC	4 cut(s)	178, 186, 193, 334
BstMBI	GATC	4 cut(s)	175, 183, 190, 331
BstNI	CCWGG	2 cut(s)	188, 269
BstNSI	RCATGY	1 cut(s)	51
BstSCI	CCNGG	3 cut(s)	186, 267, 327
BstSLI	GKGCMC	1 cut(s)	294
BstX2I	RGATCY	3 cut(s)	175, 190, 331
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	3 cut(s)	175, 190, 331
BsuRI	GGCC	2 cut(s)	61, 101
BtgI	CCRYGG	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	123, 216
BtsIMutI	CAGTG	1 cut(s)	326
Cfr13I	GGNCC	2 cut(s)	59, 134
CviAII	CATG	6 cut(s)	32, 43, 48, 97, 103, 148
CviJI	RGCY	6 cut(s)	19, 54, 61, 74, 101, 214
CviKI_1	RGCY	6 cut(s)	19, 54, 61, 74, 101, 214
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	4 cut(s)	177, 185, 192, 333
DpnII	GATC	4 cut(s)	175, 183, 190, 331
DrdI	GACNNNNNNGTC	1 cut(s)	141
DseDI	GACNNNNNNGTC	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	134
Eco72I	CACGTG	1 cut(s)	130
Eco88I	CYCGRG	2 cut(s)	171, 313
EcoRII	CCWGG	2 cut(s)	186, 267
FaeI	CATG	6 cut(s)	35, 46, 51, 100, 106, 151
FaiI	YATR	6 cut(s)	33, 44, 49, 98, 104, 149
FaqI	GGGAC	3 cut(s)	147, 250, 261
FatI	CATG	6 cut(s)	31, 42, 47, 96, 102, 147
FauI	CCCGC	1 cut(s)	229
FokI	GGATG	2 cut(s)	110, 203
HaeIII	GGCC	2 cut(s)	61, 101
HapII	CCGG	1 cut(s)	329
Hin1II	CATG	6 cut(s)	35, 46, 51, 100, 106, 151
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	329
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	3 cut(s)	138, 155, 306
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	302
HpyF3I	CTNAG	1 cut(s)	199
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	6 cut(s)	35, 46, 51, 100, 106, 151
Kzo9I	GATC	4 cut(s)	175, 183, 190, 331
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	6 cut(s)	173, 200, 235, 254, 281, 308
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	4 cut(s)	177, 185, 192, 333
MboI	GATC	4 cut(s)	175, 183, 190, 331
MflI	RGATCY	3 cut(s)	175, 190, 331
MhlI	GDGCHC	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	101
MluNI	TGGCCA	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	4 cut(s)	97, 177, 180, 322
Mox20I	TGGCCA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	101
MslI	CAYNNNNRTG	3 cut(s)	95, 101, 128
Msp20I	TGGCCA	1 cut(s)	101
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	3 cut(s)	188, 269, 329
MvaI	CCWGG	2 cut(s)	188, 269
NciI	CCSGG	1 cut(s)	329
NdeII	GATC	4 cut(s)	175, 183, 190, 331
NlaIII	CATG	6 cut(s)	35, 46, 51, 100, 106, 151
NlaIV	GGNNCC	5 cut(s)	75, 135, 192, 293, 326
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	51
PaeR7I	CTCGAG	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	68
PfoI	TCCNGGA	1 cut(s)	186
PmaCI	CACGTG	1 cut(s)	130
PmlI	CACGTG	1 cut(s)	130
Ppu21I	YACGTR	1 cut(s)	130
Psp6I	CCWGG	2 cut(s)	186, 267
PspCI	CACGTG	1 cut(s)	130
PspGI	CCWGG	2 cut(s)	186, 267
PspN4I	GGNNCC	5 cut(s)	75, 135, 192, 293, 326
PspPI	GGNCC	2 cut(s)	59, 134
PsuI	RGATCY	3 cut(s)	175, 190, 331
RseI	CAYNNNNRTG	3 cut(s)	95, 101, 128
Sau3AI	GATC	4 cut(s)	175, 183, 190, 331
Sau96I	GGNCC	2 cut(s)	59, 134
ScrFI	CCNGG	3 cut(s)	188, 269, 329
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	2 cut(s)	21, 132
Sfr274I	CTCGAG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	171
SmiMI	CAYNNNNRTG	3 cut(s)	95, 101, 128
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
SsiI	CCGC	2 cut(s)	141, 222
StyD4I	CCNGG	3 cut(s)	186, 267, 327
TaaI	ACNGT	3 cut(s)	138, 155, 306
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	1 cut(s)	172
TaqII	GACCGA	1 cut(s)	225
TfiI	GAWTC	1 cut(s)	68
TscAI	CASTG	1 cut(s)	326
TseFI	GTSAC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	134
XceI	RCATGY	1 cut(s)	51
XhoI	CTCGAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.