Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004448

Physical Location & Seq

Genomic Coordinates Reverse (-)

44575979 .. 44579370

Gene Structure 3392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG359300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTTGTACATAGTAGGTCTTGGATTGGGGAACGAGAAAGACATCACTTTGAGAGGTTTAGAAGCAGTTCAACAATGTGACAAGATCTTCGTTGAAGCCTACACTTCTCTCCTCTCTTTTGGTCTCTCTTCCCACGGTCTTATCACCCTTGAAAAGTTGTATGGGAAACCGGTTATACTTGCAGATAGAGAAACCGTGGAGGAAAAGGCCGATGATATTTTAAGTGCAGCCGCTGATTCTGACGTCGCTTTTCTTGTTGTTGGGGATCCTTTTGGACCTGATAGCTTTTATGAGAAGATTCAGAAAAATCGTGGGCTTGGACTACATACTCTCTGCTTGTTAGATATACGCGTGAAAGAACCTACCTTGGAATCTTTATGCAGAGGAAAGAAGCAGTATGAACCACCTAGATATATGTCAGTAAACACTGCAATTGAACAGTTTTTGGAGGTTGAGCAAAACCGAGGAGAATCAGCATACAACGAAGACACCATGTGTGTTGGGTTTGCTCGGCTTGGAAGTGAGGATCAGAAGATAGTTGCTGGTACAATGAGGCAACTGGAGTCGGTTGATTTTGGAGCACCTCTTCATTGCCTTGTAATAGTAGGCAAGACCCACCCAGTGGAAGAAGAAATGCTGGACTTCTACAGAACTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004164 GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0016740 GO:0016741 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

219

Amino Acids

24.36

Weight (kDa)

4.76

Isoelectric Point (pI)

28.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TP_methylase	PF00590	1 - 101	6.5e-13	Tetrapyrrole (Corrin/Porphyrin) Methylases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31790 AT4G31790
fragaria_vesca	FvH4_2g38650 FvH4_2g38650 FvH4_2g38650 FvH4_2g38650
malus_domestica	MD08G1014100.v1.1 MD15G1013600.v1.1
prunus_persica	Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1
pyrus_communis	pycom08g01280 pycom15g01180
rosa_chinensis	RchiOBHm_Chr6g0302671 RchiOBHm_Chr7g0221331
rosa_laevigata	RLG00000002161 RLG00000011149
rosa_multiflora	Rmu_co8296669.1_g000001 Rmu_sc0005455.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238400 Rroxscaffold_7G00165450
rosa_rugosa	Rorug06G0316000 Rorug07G0202200
rosa_samantha	Rh6AG429300 Rh6BG473200 Rh6CG441600 Rh6DG428400 Rh7AG341400 Rh7BG332400 Rh7CG359300
rosa_wichuraiana	Rw6G037160 Rw7G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	246
AccB7I	CCANNNNNTGG	1 cut(s)	622
AccII	CGCG	1 cut(s)	351
AciI	CCGC	1 cut(s)	231
AclWI	GGATC	3 cut(s)	260, 273, 534
AcyI	GRCGYC	1 cut(s)	243
AdeI	CACNNNGTG	2 cut(s)	495, 622
AfaI	GTAC	2 cut(s)	8, 547
AfiI	CCNNNNNNNGG	1 cut(s)	622
AflIII	ACRYGT	1 cut(s)	349
AgeI	ACCGGT	1 cut(s)	169
AgsI	TTSAA	4 cut(s)	71, 95, 152, 437
AluBI	AGCT	1 cut(s)	285
AluI	AGCT	1 cut(s)	285
Alw21I	GWGCWC	1 cut(s)	583
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	3 cut(s)	260, 273, 534
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	227
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AsiGI	ACCGGT	1 cut(s)	169
Asp700I	GAANNNNTTC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	275
BamHI	GGATCC	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	583
BbvI	GCAGC	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	646
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	2 cut(s)	228, 231
BlsI	GCNGC	2 cut(s)	229, 232
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	267
BmrI	ACTGGG	1 cut(s)	614
BmuI	ACTGGG	1 cut(s)	614
BpiI	GAAGAC	1 cut(s)	492
BpmI	CTGGAG	1 cut(s)	581
BsaHI	GRCGYC	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	4 cut(s)	133, 195, 366, 463
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	622
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	2 cut(s)	564, 620
Bse3DI	GCAATG	1 cut(s)	589
BseDI	CCNNGG	4 cut(s)	133, 195, 366, 463
BseLI	CCNNNNNNNGG	1 cut(s)	622
BseMI	GCAATG	1 cut(s)	589
BseNI	ACTGG	2 cut(s)	564, 620
BseRI	GAGGAG	2 cut(s)	101, 480
BseXI	GCAGC	1 cut(s)	239
BsgI	GTGCAG	1 cut(s)	246
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	209
BshTI	ACCGGT	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	583
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	622
BsmAI	GTCTC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	209
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp1407I	TGTACA	1 cut(s)	6
Bsp143I	GATC	3 cut(s)	84, 265, 526
BspACI	CCGC	1 cut(s)	231
BspANI	GGCC	1 cut(s)	209
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	3 cut(s)	260, 273, 534
BspTNI	GGTCTC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	589
BsrFI	RCCGGY	1 cut(s)	169
BsrGI	TGTACA	1 cut(s)	6
BsrI	ACTGG	2 cut(s)	564, 620
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	4 cut(s)	133, 195, 366, 463
BssMI	GATC	3 cut(s)	84, 265, 526
BssNI	GRCGYC	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	366
Bst4CI	ACNGT	4 cut(s)	137, 196, 441, 655
Bst6I	CTCTTC	2 cut(s)	133, 591
BstACI	GRCGYC	1 cut(s)	243
BstAUI	TGTACA	1 cut(s)	6
BstDSI	CCRYGG	2 cut(s)	133, 195
BstFNI	CGCG	1 cut(s)	351
BstKTI	GATC	3 cut(s)	87, 268, 529
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	3 cut(s)	84, 265, 526
BstSFI	CTRYAG	1 cut(s)	646
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	239
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	2 cut(s)	84, 265
BstYI	RGATCY	2 cut(s)	84, 265
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	2 cut(s)	133, 195
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	2 cut(s)	426, 627
CaiI	CAGNNNCTG	1 cut(s)	233
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	7, 546
CspAI	ACCGGT	1 cut(s)	169
CviAII	CATG	1 cut(s)	493
CviJI	RGCY	6 cut(s)	98, 209, 230, 285, 316, 514
CviKI_1	RGCY	6 cut(s)	98, 209, 230, 285, 316, 514
CviQI	GTAC	2 cut(s)	7, 546
DpnI	GATC	3 cut(s)	86, 267, 528
DpnII	GATC	3 cut(s)	84, 265, 526
DraIII	CACNNNGTG	2 cut(s)	495, 622
Eam1104I	CTCTTC	2 cut(s)	133, 591
EarI	CTCTTC	2 cut(s)	133, 591
Eco130I	CCWWGG	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	1 cut(s)	496
FatI	CATG	1 cut(s)	492
Fnu4HI	GCNGC	2 cut(s)	228, 231
Fsp4HI	GCNGC	2 cut(s)	228, 231
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	2 cut(s)	228, 231
GsuI	CTGGAG	1 cut(s)	581
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	1 cut(s)	496
HinfI	GANTC	5 cut(s)	236, 298, 371, 470, 563
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	3 cut(s)	241, 303, 531
Hpy8I	GTNNAC	1 cut(s)	424
Hpy99I	CGWCG	1 cut(s)	248
HpyCH4III	ACNGT	4 cut(s)	137, 196, 441, 655
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	4 cut(s)	182, 227, 381, 431
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	1 cut(s)	496
Kzo9I	GATC	3 cut(s)	84, 265, 526
LmnI	GCTCC	1 cut(s)	578
LpnPI	CCDG	6 cut(s)	183, 291, 528, 545, 623, 633
Lsp1109I	GCAGC	1 cut(s)	239
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	3 cut(s)	86, 267, 528
MboI	GATC	3 cut(s)	84, 265, 526
MboII	GAAGA	8 cut(s)	79, 120, 307, 497, 544, 578, 638, 641
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	2 cut(s)	84, 265
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	1 cut(s)	432
MluI	ACGCGT	1 cut(s)	349
MlyI	GAGTC	1 cut(s)	572
MnlI	CCTC	9 cut(s)	47, 122, 193, 377, 442, 458, 517, 546, 594
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	1 cut(s)	170
MunI	CAATTG	1 cut(s)	432
MvnI	CGCG	1 cut(s)	351
NdeII	GATC	3 cut(s)	84, 265, 526
NlaIII	CATG	1 cut(s)	496
NlaIV	GGNNCC	1 cut(s)	267
NmeAIII	GCCGAG	1 cut(s)	490
NmuCI	GTSAC	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	4 cut(s)	236, 298, 371, 470
PflMI	CCANNNNNTGG	1 cut(s)	622
PinAI	ACCGGT	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	229, 232
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	275
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	2 cut(s)	84, 265
RsaI	GTAC	2 cut(s)	8, 547
RsaNI	GTAC	2 cut(s)	7, 546
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	2 cut(s)	228, 231
Sau3AI	GATC	3 cut(s)	84, 265, 526
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	1 cut(s)	572
SduI	GDGCHC	1 cut(s)	583
SfcI	CTRYAG	1 cut(s)	646
SinI	GGWCC	1 cut(s)	275
Sse9I	AATT	1 cut(s)	432
SsiI	CCGC	1 cut(s)	231
SspMI	CTAG	1 cut(s)	408
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	4 cut(s)	137, 196, 441, 655
TaiI	ACGT	1 cut(s)	246
TasI	AATT	1 cut(s)	432
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	4 cut(s)	236, 298, 371, 470
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	2 cut(s)	433, 627
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	2 cut(s)	414, 578
TspRI	CASTG	2 cut(s)	433, 627
Van91I	CCANNNNNTGG	1 cut(s)	622
VpaK11BI	GGWCC	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	1 cut(s)	408
ZraI	GACGTC	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.