Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004448

Physical Location & Seq

Genomic Coordinates Forward (+)

27901754 .. 27903852

Gene Structure 2099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38650.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTTGTACATAGTTGGACTTGGATTGGGGAACGAGAAAGACATCACTTTGAGAGGTTTAGAAGCAGTTCAGAAATCTGACAAGATTTTCATCGAAGCCTACACTTCTCTTCTCTCTTTTGGTCTCTCCTCCGATGGTCTTTCCACTCTGGAAAAGTTGTACGGAAAACCGGTGATACTTGCTGATAGAGAAACCGTGGAGGAAAAGGCTGATGAAATTTTAAGTGCAGCTGCTGATTCTGACGTGGCTTTCCTTGTTGTTGGGGATCCTTTTGGAGCTACAACTCACACTGATCTAGTAGTTCGAGCTAAGAAGTTGGGGATTGATGTCAAAGTGGTGCACAATGCATCGGTTATGAATGCGGTGGGAGTCTGTGGCTTACAGCTCTACCACTATGGAGAGACAGTTTCGATACCGTTCTTTACGGATACATGGAGACCTGATAGTTTTTATGAGAAGATTCAGAAAAATCGTGGGCTTGGACTACATACTCTCTGCCTGTTAGATATACGAGTGAAAGAACCCACCCTGGAATCCTTATGCAGAGGAAAGAAGCAGTATGAACCACCTAGATATATGTCAGTAAACACTGCAATTGAACAGCTTTTGGAGGTCGAGCAAAACCAAGGAGAAAATGCATATGGTGAAGACACCATGTGTGTTGGGTTTGCTCGGCTAGGAAGTGAGGATCAGAAGATAGTTGCTGGTACAATGAAGCAACTGGAATCAGTTGATTTTGGTGCACCTCTCCATTGCCTTGTCATAGTAGGCAAGACCCACCCAGTGGAAGAAGAAATGCTGGACTTCTACAGAACTCGAAGTAACTTGTACTATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004164 GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0016740 GO:0016741 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

280

Amino Acids

30.94

Weight (kDa)

5.02

Isoelectric Point (pI)

29.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TP_methylase	PF00590	1 - 241	3.3e-26	Tetrapyrrole (Corrin/Porphyrin) Methylases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31790 AT4G31790
fragaria_vesca	FvH4_2g38650 FvH4_2g38650 FvH4_2g38650 FvH4_2g38650
malus_domestica	MD08G1014100.v1.1 MD15G1013600.v1.1
prunus_persica	Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1
pyrus_communis	pycom08g01280 pycom15g01180
rosa_chinensis	RchiOBHm_Chr6g0302671 RchiOBHm_Chr7g0221331
rosa_laevigata	RLG00000002161 RLG00000011149
rosa_multiflora	Rmu_co8296669.1_g000001 Rmu_sc0005455.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238400 Rroxscaffold_7G00165450
rosa_rugosa	Rorug06G0316000 Rorug07G0202200
rosa_samantha	Rh6AG429300 Rh6BG473200 Rh6CG441600 Rh6DG428400 Rh7AG341400 Rh7BG332400 Rh7CG359300
rosa_wichuraiana	Rw6G037160 Rw7G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	784
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	3 cut(s)	260, 273, 696
AcsI	RAATTY	1 cut(s)	216
AdeI	CACNNNGTG	2 cut(s)	657, 784
AfaI	GTAC	4 cut(s)	8, 161, 709, 830
AfiI	CCNNNNNNNGG	1 cut(s)	784
AgeI	ACCGGT	1 cut(s)	169
AgsI	TTSAA	1 cut(s)	599
AjiI	CACGTC	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	528
AluBI	AGCT	5 cut(s)	230, 278, 308, 385, 604
AluI	AGCT	5 cut(s)	230, 278, 308, 385, 604
Alw21I	GWGCWC	2 cut(s)	342, 745
Alw26I	GTCTC	3 cut(s)	128, 395, 430
Alw44I	GTGCAC	2 cut(s)	338, 741
AlwI	GGATC	3 cut(s)	260, 273, 696
AlwNI	CAGNNNCTG	1 cut(s)	233
ApaLI	GTGCAC	2 cut(s)	338, 741
ApeKI	GCWGC	2 cut(s)	227, 230
ApoI	RAATTY	1 cut(s)	216
AsiGI	ACCGGT	1 cut(s)	169
Asp700I	GAANNNNTTC	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	184, 656
BaeGI	GKGCMC	2 cut(s)	342, 745
BamHI	GGATCC	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	654
Bbv12I	GWGCWC	2 cut(s)	342, 745
BbvI	GCAGC	2 cut(s)	217, 239
BccI	CCATC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	530
BciVI	GTATCC	1 cut(s)	421
BcoDI	GTCTC	3 cut(s)	128, 395, 430
BfaI	CTAG	3 cut(s)	296, 570, 677
BfmI	CTRYAG	1 cut(s)	808
BfuI	GTATCC	1 cut(s)	421
BisI	GCNGC	2 cut(s)	228, 231
BlsI	GCNGC	2 cut(s)	229, 232
Bme1390I	CCNGG	1 cut(s)	530
BmgBI	CACGTC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	530
BmrI	ACTGGG	1 cut(s)	776
BmsI	GCATC	1 cut(s)	356
BmuI	ACTGGG	1 cut(s)	776
BpiI	GAAGAC	1 cut(s)	654
BsaBI	GATNNNNATC	1 cut(s)	89
BsaI	GGTCTC	2 cut(s)	128, 430
BsaJI	CCNNGG	3 cut(s)	195, 528, 625
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	1 cut(s)	784
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	2 cut(s)	726, 782
Bse3DI	GCAATG	1 cut(s)	751
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	530
BseDI	CCNNGG	3 cut(s)	195, 528, 625
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	784
BseMI	GCAATG	1 cut(s)	751
BseNI	ACTGG	2 cut(s)	726, 782
BseRI	GAGGAG	1 cut(s)	118
BseSI	GKGCMC	2 cut(s)	342, 745
BseXI	GCAGC	2 cut(s)	217, 239
BsgI	GTGCAG	1 cut(s)	246
BshTI	ACCGGT	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	342, 745
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	784
BsmAI	GTCTC	3 cut(s)	128, 395, 430
BsmI	GAATGC	1 cut(s)	364
Bso31I	GGTCTC	2 cut(s)	128, 430
Bsp1286I	GDGCHC	2 cut(s)	342, 745
Bsp1407I	TGTACA	1 cut(s)	6
Bsp143I	GATC	3 cut(s)	265, 292, 688
BspACI	CCGC	1 cut(s)	362
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	3 cut(s)	260, 273, 696
BspTNI	GGTCTC	2 cut(s)	128, 430
BsrDI	GCAATG	1 cut(s)	751
BsrFI	RCCGGY	1 cut(s)	169
BsrGI	TGTACA	1 cut(s)	6
BsrI	ACTGG	2 cut(s)	726, 782
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	3 cut(s)	195, 528, 625
BssMI	GATC	3 cut(s)	265, 292, 688
BssT1I	CCWWGG	1 cut(s)	625
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	3 cut(s)	196, 406, 417
Bst6I	CTCTTC	1 cut(s)	114
BstAUI	TGTACA	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	309
BstDSI	CCRYGG	1 cut(s)	195
BstKTI	GATC	3 cut(s)	268, 295, 691
BstMAI	GTCTC	3 cut(s)	128, 395, 430
BstMBI	GATC	3 cut(s)	265, 292, 688
BstNI	CCWGG	1 cut(s)	530
BstSCI	CCNGG	1 cut(s)	528
BstSFI	CTRYAG	1 cut(s)	808
BstSLI	GKGCMC	2 cut(s)	342, 745
BstV1I	GCAGC	2 cut(s)	217, 239
BstV2I	GAAGAC	1 cut(s)	654
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BsuI	GTATCC	1 cut(s)	421
BtgI	CCRYGG	1 cut(s)	195
BtrI	CACGTC	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	3 cut(s)	288, 588, 789
CaiI	CAGNNNCTG	1 cut(s)	233
Cfr10I	RCCGGY	1 cut(s)	169
Csp6I	GTAC	4 cut(s)	7, 160, 708, 829
CspAI	ACCGGT	1 cut(s)	169
CviAII	CATG	2 cut(s)	432, 655
CviQI	GTAC	4 cut(s)	7, 160, 708, 829
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	3 cut(s)	267, 294, 690
DpnII	GATC	3 cut(s)	265, 292, 688
DraIII	CACNNNGTG	2 cut(s)	657, 784
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	625
Eco31I	GGTCTC	2 cut(s)	128, 430
EcoRII	CCWGG	1 cut(s)	528
EcoT14I	CCWWGG	1 cut(s)	625
EcoT22I	ATGCAT	2 cut(s)	349, 640
ErhI	CCWWGG	1 cut(s)	625
FaeI	CATG	2 cut(s)	435, 658
FatI	CATG	2 cut(s)	431, 654
FauNDI	CATATG	1 cut(s)	640
Fnu4HI	GCNGC	2 cut(s)	228, 231
Fsp4HI	GCNGC	2 cut(s)	228, 231
FspBI	CTAG	3 cut(s)	296, 570, 677
GluI	GCNGC	2 cut(s)	228, 231
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	2 cut(s)	435, 658
HinfI	GANTC	5 cut(s)	236, 369, 460, 533, 725
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	2 cut(s)	184, 656
Hpy166II	GTNNAC	3 cut(s)	340, 586, 743
Hpy188I	TCNGA	6 cut(s)	72, 79, 133, 241, 465, 693
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	3 cut(s)	340, 586, 743
HpyCH4III	ACNGT	3 cut(s)	196, 406, 417
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	7 cut(s)	227, 340, 347, 543, 593, 638, 743
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	435, 658
Kzo9I	GATC	3 cut(s)	265, 292, 688
LmnI	GCTCC	1 cut(s)	275
Lsp1109I	GCAGC	2 cut(s)	217, 239
LweI	GCATC	1 cut(s)	356
MaeI	CTAG	3 cut(s)	296, 570, 677
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	821
MalI	GATC	3 cut(s)	267, 294, 690
MboI	GATC	3 cut(s)	265, 292, 688
MboII	GAAGA	6 cut(s)	101, 469, 659, 706, 800, 803
MfeI	CAATTG	1 cut(s)	594
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	2 cut(s)	342, 745
MluCI	AATT	2 cut(s)	216, 594
MlyI	GAGTC	1 cut(s)	378
MnlI	CCTC	7 cut(s)	47, 139, 193, 539, 604, 679, 756
Mph1103I	ATGCAT	2 cut(s)	349, 640
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	530
MunI	CAATTG	1 cut(s)	594
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	530
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	3 cut(s)	265, 292, 688
NlaIII	CATG	2 cut(s)	435, 658
NlaIV	GGNNCC	1 cut(s)	267
NmeAIII	GCCGAG	1 cut(s)	652
NsiI	ATGCAT	2 cut(s)	349, 640
PctI	GAATGC	1 cut(s)	364
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	4 cut(s)	236, 460, 533, 725
PflMI	CCANNNNNTGG	1 cut(s)	784
PinAI	ACCGGT	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	229, 232
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	528
PspGI	CCWGG	1 cut(s)	528
PspN4I	GGNNCC	1 cut(s)	267
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	265
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	4 cut(s)	8, 161, 709, 830
RsaNI	GTAC	4 cut(s)	7, 160, 708, 829
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	2 cut(s)	228, 231
Sau3AI	GATC	3 cut(s)	265, 292, 688
SchI	GAGTC	1 cut(s)	378
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	2 cut(s)	342, 745
SfaNI	GCATC	1 cut(s)	356
SfcI	CTRYAG	1 cut(s)	808
Sse9I	AATT	2 cut(s)	216, 594
SsiI	CCGC	1 cut(s)	362
SspMI	CTAG	3 cut(s)	296, 570, 677
StyD4I	CCNGG	1 cut(s)	528
StyI	CCWWGG	1 cut(s)	625
TaaI	ACNGT	3 cut(s)	196, 406, 417
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	5 cut(s)	93, 304, 410, 615, 817
TasI	AATT	2 cut(s)	216, 594
TatI	WGTACW	2 cut(s)	6, 828
TfiI	GAWTC	4 cut(s)	236, 460, 533, 725
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	3 cut(s)	295, 595, 789
TseI	GCWGC	2 cut(s)	227, 230
TspDTI	ATGAA	5 cut(s)	79, 228, 371, 576, 728
TspGWI	ACGGA	2 cut(s)	177, 440
TspRI	CASTG	3 cut(s)	295, 595, 789
Van91I	CCANNNNNTGG	1 cut(s)	784
VneI	GTGCAC	2 cut(s)	338, 741
XapI	RAATTY	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	3 cut(s)	296, 570, 677
Zsp2I	ATGCAT	2 cut(s)	349, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.