Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004448

Physical Location & Seq

Genomic Coordinates Forward (+)

1067846 .. 1069356

Gene Structure 1511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1014100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTTGTACATTGTAGGACTGGGATTGGGGGACGAGAAGGACATAACTCTGAGAGGATTAGAGGCTGTGAAGAAATGCGACAAGATTTTCATCGAAGCCTACACTTCCCTCCTCTCCTTCGGCATCTCCTCCGACGGCCTCTCCACTCTCGAAAAACTGTACGGAAATCCAGTGACACTTGCAGATAGAGAAACTGTGGAGGAAAGGGCCGATCAAATTCTAACTGCCGCCGCTGCTTCCGATGTCGCTTTCCTTGTCGTCGGCGATCCTTTTGGAGCTACGACACACACTGATATTGTGGTTCGAGCCAAGAAGTTGGGGATTGATGTCAAGGTGGTGCACAATGCGTCGGTGATGAATGCAGTTGGAGCCTGTGGATTACAACTCTACCACTACGGAGAGACGGTTTCGATACCATTCTTCAGCAATACATGGAGGCCGGATAGCTTTTATGAGAAGATTCAGAAAAATCGTGCGCTTGGGCTGCATTCGCTATGCTTGTTGGATATACGCGTGAAGGAACCAACTCTGGAATCGTTGTGCAGAGGAAAGAAGCAGTATGAACCGCCTAGATATATGTCGATAAACACTGCAATTGAGCAGCTTCTGGAGGTTGAGCACAATCGAGAAGAATCTGCATATAATGAAGACACGATGTGTGTTGGGCTTGCTCGGCTGGGAAGTGAGGATCAGAAGATCGTTTCTGGTACGATGAGGCAACTGCGGTCGGTTGATTTTGGGGCACCTCTCCATTGCCTTGTTATAGCAGGCAAAACTCATCCAGTGGAAGAAGAAATGCTGGATTTTTACAGACATTCAGAAGAGAATAATCATGGCACTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004164 GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0016740 GO:0016741 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

282

Amino Acids

31.15

Weight (kDa)

5.32

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TP_methylase	PF00590	1 - 241	6.6e-27	Tetrapyrrole (Corrin/Porphyrin) Methylases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31790 AT4G31790
fragaria_vesca	FvH4_2g38650 FvH4_2g38650 FvH4_2g38650 FvH4_2g38650
malus_domestica	MD08G1014100.v1.1 MD15G1013600.v1.1
prunus_persica	Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1
pyrus_communis	pycom08g01280 pycom15g01180
rosa_chinensis	RchiOBHm_Chr6g0302671 RchiOBHm_Chr7g0221331
rosa_laevigata	RLG00000002161 RLG00000011149
rosa_multiflora	Rmu_co8296669.1_g000001 Rmu_sc0005455.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238400 Rroxscaffold_7G00165450
rosa_rugosa	Rorug06G0316000 Rorug07G0202200
rosa_samantha	Rh6AG429300 Rh6BG473200 Rh6CG441600 Rh6DG428400 Rh7AG341400 Rh7BG332400 Rh7CG359300
rosa_wichuraiana	Rw6G037160 Rw7G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	742
AccII	CGCG	1 cut(s)	513
AciI	CCGC	4 cut(s)	228, 231, 566, 724
AclWI	GGATC	2 cut(s)	260, 696
AcsI	RAATTY	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	406
AdeI	CACNNNGTG	1 cut(s)	657
AfaI	GTAC	3 cut(s)	8, 161, 709
AflIII	ACRYGT	1 cut(s)	511
AluBI	AGCT	3 cut(s)	278, 447, 604
AluI	AGCT	3 cut(s)	278, 447, 604
Alw21I	GWGCWC	2 cut(s)	342, 621
Alw26I	GTCTC	1 cut(s)	395
Alw44I	GTGCAC	1 cut(s)	338
AlwI	GGATC	2 cut(s)	260, 696
AlwNI	CAGNNNCTG	1 cut(s)	607
AoxI	GGCC	3 cut(s)	136, 207, 437
ApaLI	GTGCAC	1 cut(s)	338
ApeKI	GCWGC	3 cut(s)	233, 484, 601
ApoI	RAATTY	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	364
BaeGI	GKGCMC	2 cut(s)	342, 745
BanI	GGYRCC	1 cut(s)	742
BbsI	GAAGAC	1 cut(s)	654
Bbv12I	GWGCWC	2 cut(s)	342, 621
BbvI	GCAGC	3 cut(s)	220, 471, 613
BceAI	ACGGC	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	570
BisI	GCNGC	5 cut(s)	228, 231, 234, 485, 602
BlsI	GCNGC	5 cut(s)	229, 232, 235, 486, 603
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	3 cut(s)	370, 522, 744
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	29
BpiI	GAAGAC	1 cut(s)	654
BpmI	CTGGAG	1 cut(s)	629
BsaBI	GATNNNNATC	1 cut(s)	89
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 390, 420
Bse1I	ACTGG	3 cut(s)	24, 170, 782
Bse3DI	GCAATG	1 cut(s)	751
Bse8I	GATNNNNATC	1 cut(s)	89
BseGI	GGATG	1 cut(s)	778
BseJI	GATNNNNATC	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	751
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	3 cut(s)	24, 170, 782
BseRI	GAGGAG	2 cut(s)	101, 118
BseSI	GKGCMC	2 cut(s)	342, 745
BseXI	GCAGC	3 cut(s)	220, 471, 613
BseYI	CCCAGC	1 cut(s)	676
BsgI	GTGCAG	1 cut(s)	562
Bsh1236I	CGCG	1 cut(s)	513
Bsh1285I	CGRYCG	1 cut(s)	728
BshFI	GGCC	3 cut(s)	138, 209, 439
BshNI	GGYRCC	1 cut(s)	742
BsiEI	CGRYCG	1 cut(s)	728
BsiHKAI	GWGCWC	2 cut(s)	342, 621
BsiSI	CCGG	1 cut(s)	440
BslFI	GGGAC	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	395
BsmBI	CGTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	44
BsmI	GAATGC	2 cut(s)	364, 487
BsnI	GGCC	3 cut(s)	138, 209, 439
Bsp1286I	GDGCHC	3 cut(s)	342, 621, 745
Bsp1407I	TGTACA	1 cut(s)	6
Bsp143I	GATC	4 cut(s)	211, 265, 688, 696
BspACI	CCGC	4 cut(s)	228, 231, 566, 724
BspANI	GGCC	3 cut(s)	138, 209, 439
BspCNI	CTCAG	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	513
BspLI	GGNNCC	3 cut(s)	370, 522, 744
BspPI	GGATC	2 cut(s)	260, 696
BspT107I	GGYRCC	1 cut(s)	742
BsrDI	GCAATG	1 cut(s)	751
BsrGI	TGTACA	1 cut(s)	6
BsrI	ACTGG	3 cut(s)	24, 170, 782
BssMI	GATC	4 cut(s)	211, 265, 688, 696
Bst4CI	ACNGT	4 cut(s)	159, 196, 406, 841
Bst6I	CTCTTC	1 cut(s)	816
BstAUI	TGTACA	1 cut(s)	6
BstC8I	GCNNGC	2 cut(s)	669, 769
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	778
BstFNI	CGCG	1 cut(s)	513
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	4 cut(s)	214, 268, 691, 699
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	4 cut(s)	211, 265, 688, 696
BstMCI	CGRYCG	1 cut(s)	728
BstMWI	GCNNNNNNNGC	5 cut(s)	233, 368, 484, 490, 673
BstSLI	GKGCMC	2 cut(s)	342, 745
BstUI	CGCG	1 cut(s)	513
BstV1I	GCAGC	3 cut(s)	220, 471, 613
BstV2I	GAAGAC	1 cut(s)	654
BstXI	CCANNNNNNTGG	1 cut(s)	316
BsuRI	GGCC	3 cut(s)	138, 209, 439
BtsCI	GGATG	1 cut(s)	778
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	5 cut(s)	177, 288, 588, 789, 837
Cac8I	GCNNGC	2 cut(s)	669, 769
CaiI	CAGNNNCTG	1 cut(s)	607
CfoI	GCGC	1 cut(s)	478
Cfr13I	GGNCC	1 cut(s)	207
CseI	GACGC	1 cut(s)	336
Csp6I	GTAC	3 cut(s)	7, 160, 708
CviAII	CATG	2 cut(s)	432, 833
CviQI	GTAC	3 cut(s)	7, 160, 708
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	4 cut(s)	213, 267, 690, 698
DpnII	GATC	4 cut(s)	211, 265, 688, 696
DraIII	CACNNNGTG	1 cut(s)	657
Eam1104I	CTCTTC	1 cut(s)	816
EarI	CTCTTC	1 cut(s)	816
Eco57I	CTGAAG	1 cut(s)	406
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	2 cut(s)	435, 836
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	2 cut(s)	431, 832
Fnu4HI	GCNGC	5 cut(s)	228, 231, 234, 485, 602
FokI	GGATG	1 cut(s)	765
Fsp4HI	GCNGC	5 cut(s)	228, 231, 234, 485, 602
FspBI	CTAG	1 cut(s)	570
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	5 cut(s)	228, 231, 234, 485, 602
GsaI	CCCAGC	1 cut(s)	680
GsuI	CTGGAG	1 cut(s)	629
HaeIII	GGCC	3 cut(s)	138, 209, 439
HapII	CCGG	1 cut(s)	440
HgaI	GACGC	1 cut(s)	336
HhaI	GCGC	1 cut(s)	478
Hin1II	CATG	2 cut(s)	435, 836
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HinfI	GANTC	3 cut(s)	460, 533, 632
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	6 cut(s)	51, 133, 241, 465, 693, 820
Hpy188III	TCNNGA	4 cut(s)	149, 530, 608, 626
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	3 cut(s)	137, 263, 352
HpyAV	CCTTC	3 cut(s)	31, 127, 511
HpyCH4III	ACNGT	4 cut(s)	159, 196, 406, 841
HpyCH4V	TGCA	7 cut(s)	182, 340, 362, 487, 543, 593, 638
HpyF10VI	GCNNNNNNNGC	5 cut(s)	233, 368, 484, 490, 673
HpyF3I	CTNAG	1 cut(s)	50
Hsp92II	CATG	2 cut(s)	435, 836
HspAI	GCGC	1 cut(s)	476
Kzo9I	GATC	4 cut(s)	211, 265, 688, 696
LmnI	GCTCC	2 cut(s)	275, 368
Lsp1109I	GCAGC	3 cut(s)	220, 471, 613
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	1 cut(s)	570
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	4 cut(s)	213, 267, 690, 698
MboI	GATC	4 cut(s)	211, 265, 688, 696
MboII	GAAGA	9 cut(s)	82, 412, 469, 641, 659, 706, 800, 803, 833
MfeI	CAATTG	1 cut(s)	594
MhlI	GDGCHC	3 cut(s)	342, 621, 745
MluCI	AATT	2 cut(s)	216, 594
MluI	ACGCGT	1 cut(s)	511
MmeI	TCCRAC	3 cut(s)	156, 346, 483
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	1 cut(s)	440
MunI	CAATTG	1 cut(s)	594
Mva1269I	GAATGC	2 cut(s)	364, 487
MvnI	CGCG	1 cut(s)	513
MwoI	GCNNNNNNNGC	5 cut(s)	233, 368, 484, 490, 673
NdeII	GATC	4 cut(s)	211, 265, 688, 696
NlaIII	CATG	2 cut(s)	435, 836
NlaIV	GGNNCC	3 cut(s)	370, 522, 744
NmeAIII	GCCGAG	1 cut(s)	652
NmuCI	GTSAC	1 cut(s)	172
PctI	GAATGC	2 cut(s)	364, 487
PfeI	GAWTC	3 cut(s)	460, 533, 632
PkrI	GCNGC	5 cut(s)	229, 232, 235, 486, 603
PspFI	CCCAGC	1 cut(s)	676
PspN4I	GGNNCC	3 cut(s)	370, 522, 744
PspPI	GGNCC	1 cut(s)	207
PstNI	CAGNNNCTG	1 cut(s)	607
RsaI	GTAC	3 cut(s)	8, 161, 709
RsaNI	GTAC	3 cut(s)	7, 160, 708
SatI	GCNGC	5 cut(s)	228, 231, 234, 485, 602
Sau3AI	GATC	4 cut(s)	211, 265, 688, 696
Sau96I	GGNCC	1 cut(s)	207
SduI	GDGCHC	3 cut(s)	342, 621, 745
SetI	ASST	6 cut(s)	280, 336, 449, 606, 615, 748
SfaNI	GCATC	1 cut(s)	132
Sse9I	AATT	2 cut(s)	216, 594
SsiI	CCGC	4 cut(s)	228, 231, 566, 724
SspMI	CTAG	1 cut(s)	570
TaaI	ACNGT	4 cut(s)	159, 196, 406, 841
TaqI	TCGA	6 cut(s)	93, 150, 304, 410, 581, 625
TasI	AATT	2 cut(s)	216, 594
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	2 cut(s)	230, 233
TfiI	GAWTC	3 cut(s)	460, 533, 632
TscAI	CASTG	5 cut(s)	177, 295, 595, 789, 844
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	3 cut(s)	233, 484, 601
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	4 cut(s)	79, 371, 576, 660
TspGWI	ACGGA	2 cut(s)	177, 411
TspRI	CASTG	5 cut(s)	177, 295, 595, 789, 844
VneI	GTGCAC	1 cut(s)	338
XapI	RAATTY	1 cut(s)	216
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.