Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005455.1

Orthogroup ID

OG0004448

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 356

Gene Structure 356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005455.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 268 bp

gcagtatgaaccacctagatatatgtcagtaaacactgcaattgaacagcttttggaggttgagcaaaaccgaggagaatctgcctacagcgaagacaccatgtgtgttgggtttgctcggcttggaagtgaggatcagaagatatttgctggcacaatgaggcaactcgagtcggttgattttggagcgcctcttcattgccttgtcatagtaggcaagacccatccagtggaagaagaaatgctggacttctacagaactgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004164 GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0016740 GO:0016741 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

88

Amino Acids

10.0

Weight (kDa)

4.53

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31790 AT4G31790
fragaria_vesca	FvH4_2g38650 FvH4_2g38650 FvH4_2g38650 FvH4_2g38650
malus_domestica	MD08G1014100.v1.1 MD15G1013600.v1.1
prunus_persica	Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1
pyrus_communis	pycom08g01280 pycom15g01180
rosa_chinensis	RchiOBHm_Chr6g0302671 RchiOBHm_Chr7g0221331
rosa_laevigata	RLG00000002161 RLG00000011149
rosa_multiflora	Rmu_co8296669.1_g000001 Rmu_sc0005455.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238400 Rroxscaffold_7G00165450
rosa_rugosa	Rorug06G0316000 Rorug07G0202200
rosa_samantha	Rh6AG429300 Rh6BG473200 Rh6CG441600 Rh6DG428400 Rh7AG341400 Rh7BG332400 Rh7CG359300
rosa_wichuraiana	Rw6G037160 Rw7G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	230
AclWI	GGATC	1 cut(s)	142
AdeI	CACNNNGTG	1 cut(s)	103
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	45
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
AlwI	GGATC	1 cut(s)	142
Ama87I	CYCGRG	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	100
BccI	CCATC	1 cut(s)	232
BfaI	CTAG	1 cut(s)	16
BfmI	CTRYAG	2 cut(s)	86, 254
BfoI	RGCGCY	1 cut(s)	192
BmeT110I	CYCGRG	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	197
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMI	GCAATG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	228
BseRI	GAGGAG	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	230
BsoBI	CYCGRG	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	134
BspPI	GGATC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	134
BstSFI	CTRYAG	2 cut(s)	86, 254
BstV2I	GAAGAC	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	224
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	2 cut(s)	34, 235
Cac8I	GCNNGC	1 cut(s)	152
CfoI	GCGC	1 cut(s)	191
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	2 cut(s)	50, 122
CviKI_1	RGCY	2 cut(s)	50, 122
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
DraIII	CACNNNGTG	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	168
FaeI	CATG	1 cut(s)	104
FaiI	YATR	6 cut(s)	7, 22, 24, 102, 210, 266
FatI	CATG	1 cut(s)	100
FokI	GGATG	1 cut(s)	211
FspBI	CTAG	1 cut(s)	16
GlaI	GCGC	1 cut(s)	190
HaeII	RGCGCY	1 cut(s)	192
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	1 cut(s)	104
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	2 cut(s)	78, 171
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	104
HspAI	GCGC	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	186
LpnPI	CCDG	3 cut(s)	136, 231, 241
MaeI	CTAG	1 cut(s)	16
MalI	GATC	1 cut(s)	136
MboI	GATC	1 cut(s)	134
MboII	GAAGA	5 cut(s)	105, 152, 186, 246, 249
MfeI	CAATTG	1 cut(s)	40
MluCI	AATT	1 cut(s)	40
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	5 cut(s)	50, 66, 125, 154, 202
MunI	CAATTG	1 cut(s)	40
NdeII	GATC	1 cut(s)	134
NlaIII	CATG	1 cut(s)	104
NmeAIII	GCCGAG	1 cut(s)	98
PaeR7I	CTCGAG	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	78
PflMI	CCANNNNNTGG	1 cut(s)	230
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PspXI	VCTCGAGB	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	180
SetI	ASST	3 cut(s)	17, 52, 61
SfcI	CTRYAG	2 cut(s)	86, 254
Sfr274I	CTCGAG	1 cut(s)	168
SlaI	CTCGAG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
Sse9I	AATT	1 cut(s)	40
SspMI	CTAG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	263
TaqI	TCGA	1 cut(s)	169
TasI	AATT	1 cut(s)	40
TfiI	GAWTC	1 cut(s)	78
TscAI	CASTG	2 cut(s)	41, 235
TspDTI	ATGAA	2 cut(s)	22, 186
TspRI	CASTG	2 cut(s)	41, 235
Van91I	CCANNNNNTGG	1 cut(s)	230
XhoI	CTCGAG	1 cut(s)	168
XspI	CTAG	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.