Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004448

Physical Location & Seq

Genomic Coordinates Reverse (-)

60891635 .. 60895997

Gene Structure 4363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG428400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTTGTACATAGTAGGACTTGGATTGGGGAACGAGAAAGACATCACTTTGAGAGGTTTAGAAGCAGTTCAGAAATGTGACAAGGTTTTCATTGAAGCCTACACTTCCCTCCTCTCTTTTGGTCTCTCTTCCGATGGTCTTTCCACACTGGAAAAGTTGTATGGGAAACCGGTTATACTTGCAGATAGAGAAACCGTGGAGGAAAAGGCCGATGAAATTTTAAGTGCAGCTGCTGATTCTGACGTGGCTTTTCTTGTAGTTGGGGATCCTTTTGGAGCTACAACTCACACTGATCTTGTAGTTCGTGCTAAGAAGTTGGGGATTGATGTCAAAGTGGTGCATAATGCATCGGTTATGAATGCTGTTGGAGTCTGTGGCTTACAGCTCTACCACTATGGAGAGACAGTTTCAATACCATTCTTTACCGATACATGGAGACCTGATAGCTTTTATGAGAAGATTCAGAAAAATCGTGGGCTTGGACTACATACTCTCTGCTTGTTAGATATACGCGTGAAAGAACCCACCCTGGAATCCTTATGCAGAGGAAAGAAGCAGTATGAACCACCTAGATATATGTCAGTAAACACTGCAATTGAACAGCTTTTGGAGGTTGAGCAAAACCGAGGAGAATCTGCCTACAGCGAAGACACCATGTGTGTTGGGTTTGCTCGGCTTGGAAGTGAGGATCAGAAGATAGTTGCTGGCACAATGAGGCAACTGGAGTCTGTTGATTTTGGAGCACCTCTTCATTGCCTTGTCATAGTAGGCAAGACCCACCCAGTGGAAGAAGAAATGCTGGACTTCTACAGAACTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004164 GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0016740 GO:0016741 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

273

Amino Acids

30.2

Weight (kDa)

5.02

Isoelectric Point (pI)

29.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TP_methylase	PF00590	1 - 241	1.4e-26	Tetrapyrrole (Corrin/Porphyrin) Methylases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31790 AT4G31790
fragaria_vesca	FvH4_2g38650 FvH4_2g38650 FvH4_2g38650 FvH4_2g38650
malus_domestica	MD08G1014100.v1.1 MD15G1013600.v1.1
prunus_persica	Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1
pyrus_communis	pycom08g01280 pycom15g01180
rosa_chinensis	RchiOBHm_Chr6g0302671 RchiOBHm_Chr7g0221331
rosa_laevigata	RLG00000002161 RLG00000011149
rosa_multiflora	Rmu_co8296669.1_g000001 Rmu_sc0005455.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238400 Rroxscaffold_7G00165450
rosa_rugosa	Rorug06G0316000 Rorug07G0202200
rosa_samantha	Rh6AG429300 Rh6BG473200 Rh6CG441600 Rh6DG428400 Rh7AG341400 Rh7BG332400 Rh7CG359300
rosa_wichuraiana	Rw6G037160 Rw7G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	784
AccII	CGCG	1 cut(s)	513
AclWI	GGATC	3 cut(s)	260, 273, 696
AcsI	RAATTY	1 cut(s)	216
AdeI	CACNNNGTG	2 cut(s)	657, 784
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	432, 784
AflIII	ACRYGT	1 cut(s)	511
AgeI	ACCGGT	1 cut(s)	169
AgsI	TTSAA	3 cut(s)	95, 411, 599
AjiI	CACGTC	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	528
AluBI	AGCT	5 cut(s)	230, 278, 385, 447, 604
AluI	AGCT	5 cut(s)	230, 278, 385, 447, 604
Alw21I	GWGCWC	1 cut(s)	745
Alw26I	GTCTC	3 cut(s)	128, 395, 430
AlwI	GGATC	3 cut(s)	260, 273, 696
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	227, 230
ApoI	RAATTY	1 cut(s)	216
AsiGI	ACCGGT	1 cut(s)	169
Asp700I	GAANNNNTTC	1 cut(s)	66
BamHI	GGATCC	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	654
Bbv12I	GWGCWC	1 cut(s)	745
BbvI	GCAGC	2 cut(s)	217, 239
BccI	CCATC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	530
BcoDI	GTCTC	3 cut(s)	128, 395, 430
BfaI	CTAG	1 cut(s)	570
BfmI	CTRYAG	2 cut(s)	640, 808
BisI	GCNGC	2 cut(s)	228, 231
BlsI	GCNGC	2 cut(s)	229, 232
Bme1390I	CCNGG	1 cut(s)	530
BmgBI	CACGTC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	530
BmrI	ACTGGG	1 cut(s)	776
BmsI	GCATC	1 cut(s)	356
BmuI	ACTGGG	1 cut(s)	776
BpiI	GAAGAC	1 cut(s)	654
BpmI	CTGGAG	1 cut(s)	743
BsaI	GGTCTC	2 cut(s)	128, 430
BsaJI	CCNNGG	3 cut(s)	195, 528, 625
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 784
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	3 cut(s)	153, 726, 782
Bse3DI	GCAATG	1 cut(s)	751
BseBI	CCWGG	1 cut(s)	530
BseDI	CCNNGG	3 cut(s)	195, 528, 625
BseLI	CCNNNNNNNGG	2 cut(s)	432, 784
BseMI	GCAATG	1 cut(s)	751
BseNI	ACTGG	3 cut(s)	153, 726, 782
BseRI	GAGGAG	2 cut(s)	101, 642
BseXI	GCAGC	2 cut(s)	217, 239
BsgI	GTGCAG	1 cut(s)	246
Bsh1236I	CGCG	1 cut(s)	513
BshFI	GGCC	1 cut(s)	209
BshTI	ACCGGT	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	745
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	432, 784
BsmAI	GTCTC	3 cut(s)	128, 395, 430
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	1 cut(s)	209
Bso31I	GGTCTC	2 cut(s)	128, 430
Bsp1286I	GDGCHC	1 cut(s)	745
Bsp1407I	TGTACA	1 cut(s)	6
Bsp143I	GATC	3 cut(s)	265, 292, 688
BspANI	GGCC	1 cut(s)	209
BspFNI	CGCG	1 cut(s)	513
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	3 cut(s)	260, 273, 696
BspTNI	GGTCTC	2 cut(s)	128, 430
BsrDI	GCAATG	1 cut(s)	751
BsrFI	RCCGGY	1 cut(s)	169
BsrGI	TGTACA	1 cut(s)	6
BsrI	ACTGG	3 cut(s)	153, 726, 782
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	3 cut(s)	195, 528, 625
BssMI	GATC	3 cut(s)	265, 292, 688
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	3 cut(s)	196, 406, 817
Bst6I	CTCTTC	2 cut(s)	133, 753
BstAUI	TGTACA	1 cut(s)	6
BstC8I	GCNNGC	1 cut(s)	706
BstDEI	CTNAG	1 cut(s)	309
BstDSI	CCRYGG	1 cut(s)	195
BstFNI	CGCG	1 cut(s)	513
BstKTI	GATC	3 cut(s)	268, 295, 691
BstMAI	GTCTC	3 cut(s)	128, 395, 430
BstMBI	GATC	3 cut(s)	265, 292, 688
BstNI	CCWGG	1 cut(s)	530
BstSCI	CCNGG	1 cut(s)	528
BstSFI	CTRYAG	2 cut(s)	640, 808
BstUI	CGCG	1 cut(s)	513
BstV1I	GCAGC	2 cut(s)	217, 239
BstV2I	GAAGAC	1 cut(s)	654
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	195
BtrI	CACGTC	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	4 cut(s)	146, 288, 588, 789
Cac8I	GCNNGC	1 cut(s)	706
CaiI	CAGNNNCTG	1 cut(s)	233
Cfr10I	RCCGGY	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	7
CspAI	ACCGGT	1 cut(s)	169
CviAII	CATG	2 cut(s)	432, 655
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	3 cut(s)	267, 294, 690
DpnII	GATC	3 cut(s)	265, 292, 688
DraIII	CACNNNGTG	2 cut(s)	657, 784
Eam1104I	CTCTTC	2 cut(s)	133, 753
EarI	CTCTTC	2 cut(s)	133, 753
Eco31I	GGTCTC	2 cut(s)	128, 430
EcoRII	CCWGG	1 cut(s)	528
EcoT22I	ATGCAT	1 cut(s)	349
FaeI	CATG	2 cut(s)	435, 658
FatI	CATG	2 cut(s)	431, 654
Fnu4HI	GCNGC	2 cut(s)	228, 231
Fsp4HI	GCNGC	2 cut(s)	228, 231
FspBI	CTAG	1 cut(s)	570
GluI	GCNGC	2 cut(s)	228, 231
GsuI	CTGGAG	1 cut(s)	743
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	2 cut(s)	435, 658
HinfI	GANTC	6 cut(s)	236, 369, 460, 533, 632, 725
HpaII	CCGG	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	5 cut(s)	72, 133, 241, 465, 693
Hpy8I	GTNNAC	1 cut(s)	586
HpyCH4III	ACNGT	3 cut(s)	196, 406, 817
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	6 cut(s)	182, 227, 340, 347, 543, 593
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	435, 658
Kzo9I	GATC	3 cut(s)	265, 292, 688
LmnI	GCTCC	2 cut(s)	275, 740
LpnPI	CCDG	9 cut(s)	134, 183, 453, 515, 542, 690, 707, 785, 795
Lsp1109I	GCAGC	2 cut(s)	217, 239
LweI	GCATC	1 cut(s)	356
MaeI	CTAG	1 cut(s)	570
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	3 cut(s)	267, 294, 690
MboI	GATC	3 cut(s)	265, 292, 688
MboII	GAAGA	7 cut(s)	120, 469, 659, 706, 740, 800, 803
MfeI	CAATTG	1 cut(s)	594
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	745
MluCI	AATT	2 cut(s)	216, 594
MluI	ACGCGT	1 cut(s)	511
MlyI	GAGTC	2 cut(s)	378, 734
MmeI	TCCRAC	1 cut(s)	346
Mph1103I	ATGCAT	1 cut(s)	349
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	530
MunI	CAATTG	1 cut(s)	594
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	530
MvnI	CGCG	1 cut(s)	513
NdeII	GATC	3 cut(s)	265, 292, 688
NlaIII	CATG	2 cut(s)	435, 658
NlaIV	GGNNCC	1 cut(s)	267
NmeAIII	GCCGAG	1 cut(s)	652
NmuCI	GTSAC	1 cut(s)	77
NsiI	ATGCAT	1 cut(s)	349
PctI	GAATGC	1 cut(s)	364
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	4 cut(s)	236, 460, 533, 632
PflMI	CCANNNNNTGG	1 cut(s)	784
PinAI	ACCGGT	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	229, 232
PleI	GAGTC	2 cut(s)	377, 733
PpsI	GAGTC	2 cut(s)	377, 733
Psp6I	CCWGG	1 cut(s)	528
PspGI	CCWGG	1 cut(s)	528
PspN4I	GGNNCC	1 cut(s)	267
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	265
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	2 cut(s)	228, 231
Sau3AI	GATC	3 cut(s)	265, 292, 688
SchI	GAGTC	2 cut(s)	378, 734
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	1 cut(s)	745
SfaNI	GCATC	1 cut(s)	356
SfcI	CTRYAG	2 cut(s)	640, 808
Sse9I	AATT	2 cut(s)	216, 594
SspMI	CTAG	1 cut(s)	570
StyD4I	CCNGG	1 cut(s)	528
TaaI	ACNGT	3 cut(s)	196, 406, 817
TaiI	ACGT	1 cut(s)	246
TasI	AATT	2 cut(s)	216, 594
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	4 cut(s)	236, 460, 533, 632
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	4 cut(s)	153, 295, 595, 789
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	2 cut(s)	227, 230
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	5 cut(s)	79, 228, 371, 576, 740
TspRI	CASTG	4 cut(s)	153, 295, 595, 789
Van91I	CCANNNNNTGG	1 cut(s)	784
XapI	RAATTY	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	1 cut(s)	570
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.