Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004448

Physical Location & Seq

Genomic Coordinates Reverse (-)

40011200 .. 40013491

Gene Structure 2292 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G029030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGTTTCATATAAATTCCTGAAACGAACAACGCCGTCTTCTTCCCTCTTCTCTTTTATACGAAAACTCACCGACTCAAGATCAAGAAAGATGTTGTACATGGAAAAGTTGGATGGGAAACCGGTTATACTTGCACATAGAGAAACCGTGGAGGAAAAGGCCGATGATATTTTAAGTGCAGCTGCTGATTCTGACGTCTCTTTTCTTGTTGTTGGGGATCCTTTTGCAGCTACAACTCACACTGATCTTGTAGTTCGAGCTAAGAAGTTAGGGATTAATGTCAAAGTGGTGCATAATGCATCGGTTATGAATGCGGTTGGAGTCTGTGGCTTGCAGCTCTACCATTATGGAGAGACAGTTTCGATACCATTCCTCACGGATACATGGAGACCTGATAGCTTTTATGAGAAGATTCAGAAAAATCGTGGGCTTGGACTACATACTCTCTGCTTGTTAGATATACGCGTGAAAGAACCTATCTTGGAATCTTTATGCAGAGGAAAGCAGTATGAACCACCTAGATATATGTCAGTAAACACTGCAATTGAACAGCTTTTGGAGGTTGAGCAAAACCGAGGAGAATCAGGATCAGAAGATAGTTGCTGGTACAATGAACTGGAGTCGGTTGATTTTGGAGCACCTCTTCATTGCCTTGTAATAGTAGGCAAGACCCACCCAGTGGAAGAAGAAATGCTGGACTTCTACAGAATTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004164 GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0016740 GO:0016741 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

238

Amino Acids

26.9

Weight (kDa)

5.83

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TP_methylase	PF00590	50 - 167	2.8e-11	Tetrapyrrole (Corrin/Porphyrin) Methylases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31790 AT4G31790
fragaria_vesca	FvH4_2g38650 FvH4_2g38650 FvH4_2g38650 FvH4_2g38650
malus_domestica	MD08G1014100.v1.1 MD15G1013600.v1.1
prunus_persica	Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1
pyrus_communis	pycom08g01280 pycom15g01180
rosa_chinensis	RchiOBHm_Chr6g0302671 RchiOBHm_Chr7g0221331
rosa_laevigata	RLG00000002161 RLG00000011149
rosa_multiflora	Rmu_co8296669.1_g000001 Rmu_sc0005455.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238400 Rroxscaffold_7G00165450
rosa_rugosa	Rorug06G0316000 Rorug07G0202200
rosa_samantha	Rh6AG429300 Rh6BG473200 Rh6CG441600 Rh6DG428400 Rh7AG341400 Rh7BG332400 Rh7CG359300
rosa_wichuraiana	Rw6G037160 Rw7G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	198
AccB7I	CCANNNNNTGG	1 cut(s)	679
AccII	CGCG	1 cut(s)	465
AciI	CCGC	1 cut(s)	314
AclWI	GGATC	3 cut(s)	212, 225, 595
AcsI	RAATTY	1 cut(s)	14
AcyI	GRCGYC	1 cut(s)	195
AdeI	CACNNNGTG	1 cut(s)	679
AfaI	GTAC	2 cut(s)	98, 608
AfiI	CCNNNNNNNGG	1 cut(s)	679
AflIII	ACRYGT	1 cut(s)	463
AgeI	ACCGGT	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	548
AluBI	AGCT	6 cut(s)	182, 230, 260, 337, 399, 553
AluI	AGCT	6 cut(s)	182, 230, 260, 337, 399, 553
Alw21I	GWGCWC	1 cut(s)	640
Alw26I	GTCTC	3 cut(s)	202, 347, 382
AlwI	GGATC	3 cut(s)	212, 225, 595
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	4 cut(s)	179, 182, 227, 334
ApoI	RAATTY	1 cut(s)	14
AseI	ATTAAT	1 cut(s)	276
AsiGI	ACCGGT	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	61
BamHI	GGATCC	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	640
BbvI	GCAGC	4 cut(s)	169, 191, 239, 346
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	19
BciVI	GTATCC	1 cut(s)	373
BcoDI	GTCTC	3 cut(s)	202, 347, 382
BfaI	CTAG	1 cut(s)	519
BfmI	CTRYAG	1 cut(s)	703
BfuI	GTATCC	1 cut(s)	373
BisI	GCNGC	4 cut(s)	180, 183, 228, 335
BlsI	GCNGC	4 cut(s)	181, 184, 229, 336
BmiI	GGNNCC	1 cut(s)	219
BmrI	ACTGGG	1 cut(s)	671
BmsI	GCATC	1 cut(s)	308
BmuI	ACTGGG	1 cut(s)	671
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	638
BpuEI	CTTGAG	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	382
BsaJI	CCNNGG	2 cut(s)	147, 574
BsaWI	WCCGGW	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	1 cut(s)	679
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	621, 677
Bse3DI	GCAATG	1 cut(s)	646
BseDI	CCNNGG	2 cut(s)	147, 574
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	679
BseMI	GCAATG	1 cut(s)	646
BseNI	ACTGG	2 cut(s)	621, 677
BseRI	GAGGAG	1 cut(s)	591
BseXI	GCAGC	4 cut(s)	169, 191, 239, 346
BsgI	GTGCAG	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	465
BshFI	GGCC	1 cut(s)	161
BshTI	ACCGGT	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	640
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	679
BsmAI	GTCTC	3 cut(s)	202, 347, 382
BsmBI	CGTCTC	1 cut(s)	202
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	161
Bso31I	GGTCTC	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	640
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	80, 217, 244, 587
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	161
BspFNI	CGCG	1 cut(s)	465
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	3 cut(s)	212, 225, 595
BspTNI	GGTCTC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	646
BsrFI	RCCGGY	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	2 cut(s)	621, 677
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	147, 574
BssMI	GATC	4 cut(s)	80, 217, 244, 587
BssNI	GRCGYC	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	148, 358
Bst6I	CTCTTC	2 cut(s)	53, 648
BstACI	GRCGYC	1 cut(s)	195
BstAUI	TGTACA	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	261
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	1 cut(s)	465
BstKTI	GATC	4 cut(s)	83, 220, 247, 590
BstMAI	GTCTC	3 cut(s)	202, 347, 382
BstMBI	GATC	4 cut(s)	80, 217, 244, 587
BstSFI	CTRYAG	1 cut(s)	703
BstUI	CGCG	1 cut(s)	465
BstV1I	GCAGC	4 cut(s)	169, 191, 239, 346
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	3 cut(s)	240, 537, 684
Cac8I	GCNNGC	1 cut(s)	332
CaiI	CAGNNNCTG	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	121
Csp6I	GTAC	2 cut(s)	97, 607
CspAI	ACCGGT	1 cut(s)	121
CviAII	CATG	2 cut(s)	100, 384
CviJI	RGCY	9 cut(s)	161, 182, 230, 260, 330, 337, 399, 430, 553
CviKI_1	RGCY	9 cut(s)	161, 182, 230, 260, 330, 337, 399, 430, 553
CviQI	GTAC	2 cut(s)	97, 607
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	4 cut(s)	82, 219, 246, 589
DpnII	GATC	4 cut(s)	80, 217, 244, 587
DraIII	CACNNNGTG	1 cut(s)	679
Eam1104I	CTCTTC	2 cut(s)	53, 648
EarI	CTCTTC	2 cut(s)	53, 648
Eco31I	GGTCTC	1 cut(s)	382
EcoT22I	ATGCAT	1 cut(s)	301
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	2 cut(s)	103, 387
FatI	CATG	2 cut(s)	99, 383
Fnu4HI	GCNGC	4 cut(s)	180, 183, 228, 335
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	4 cut(s)	180, 183, 228, 335
FspBI	CTAG	1 cut(s)	519
GluI	GCNGC	4 cut(s)	180, 183, 228, 335
GsuI	CTGGAG	1 cut(s)	638
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	103, 387
HinfI	GANTC	7 cut(s)	74, 188, 321, 412, 485, 581, 620
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	3 cut(s)	193, 417, 592
Hpy188III	TCNNGA	4 cut(s)	19, 78, 84, 585
Hpy8I	GTNNAC	1 cut(s)	535
HpyCH4III	ACNGT	2 cut(s)	148, 358
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	8 cut(s)	134, 179, 227, 292, 299, 334, 495, 542
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	103, 387
Kzo9I	GATC	4 cut(s)	80, 217, 244, 587
LmnI	GCTCC	1 cut(s)	635
LpnPI	CCDG	8 cut(s)	32, 135, 405, 570, 589, 602, 680, 690
Lsp1109I	GCAGC	4 cut(s)	169, 191, 239, 346
LweI	GCATC	1 cut(s)	308
MaeI	CTAG	1 cut(s)	519
MaeII	ACGT	1 cut(s)	195
MalI	GATC	4 cut(s)	82, 219, 246, 589
MboI	GATC	4 cut(s)	80, 217, 244, 587
MboII	GAAGA	8 cut(s)	30, 33, 40, 421, 605, 635, 695, 698
MfeI	CAATTG	1 cut(s)	543
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	640
MluCI	AATT	3 cut(s)	14, 543, 708
MluI	ACGCGT	1 cut(s)	463
MlyI	GAGTC	3 cut(s)	68, 330, 629
MmeI	TCCRAC	2 cut(s)	90, 298
MnlI	CCTC	7 cut(s)	56, 145, 383, 491, 553, 569, 651
Mph1103I	ATGCAT	1 cut(s)	301
MseI	TTAA	2 cut(s)	173, 276
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	543
Mva1269I	GAATGC	1 cut(s)	316
MvnI	CGCG	1 cut(s)	465
NdeII	GATC	4 cut(s)	80, 217, 244, 587
NlaIII	CATG	2 cut(s)	103, 387
NlaIV	GGNNCC	1 cut(s)	219
NsiI	ATGCAT	1 cut(s)	301
PctI	GAATGC	1 cut(s)	316
PfeI	GAWTC	4 cut(s)	188, 412, 485, 581
PflMI	CCANNNNNTGG	1 cut(s)	679
PinAI	ACCGGT	1 cut(s)	121
PkrI	GCNGC	4 cut(s)	181, 184, 229, 336
PleI	GAGTC	3 cut(s)	68, 329, 628
PpsI	GAGTC	3 cut(s)	68, 329, 628
PshBI	ATTAAT	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	219
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	217
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	2 cut(s)	98, 608
RsaNI	GTAC	2 cut(s)	97, 607
SaqAI	TTAA	2 cut(s)	173, 276
SatI	GCNGC	4 cut(s)	180, 183, 228, 335
Sau3AI	GATC	4 cut(s)	80, 217, 244, 587
SchI	GAGTC	3 cut(s)	68, 330, 629
SduI	GDGCHC	1 cut(s)	640
SfaNI	GCATC	1 cut(s)	308
SfcI	CTRYAG	1 cut(s)	703
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	3 cut(s)	14, 543, 708
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	1 cut(s)	519
TaaI	ACNGT	2 cut(s)	148, 358
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	2 cut(s)	256, 362
TasI	AATT	3 cut(s)	14, 543, 708
TatI	WGTACW	1 cut(s)	96
TfiI	GAWTC	4 cut(s)	188, 412, 485, 581
Tru1I	TTAA	2 cut(s)	173, 276
Tru9I	TTAA	2 cut(s)	173, 276
TscAI	CASTG	3 cut(s)	247, 544, 684
TseI	GCWGC	4 cut(s)	179, 182, 227, 334
TspDTI	ATGAA	4 cut(s)	323, 525, 627, 635
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	3 cut(s)	247, 544, 684
Van91I	CCANNNNNTGG	1 cut(s)	679
VspI	ATTAAT	1 cut(s)	276
XapI	RAATTY	1 cut(s)	14
XspI	CTAG	1 cut(s)	519
ZraI	GACGTC	1 cut(s)	196
Zsp2I	ATGCAT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.