Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004448

Physical Location & Seq

Genomic Coordinates Forward (+)

631288 .. 632755

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g01180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCTGTACATAGTAGGACTGGGATTGGGGGACGAGAAAGACATAACTCTGAGAGGATTAGAGGCTGTGAAGAAATGCGACAAAATTTTCATCGAAGCCTACACTTCCCTCCTCTCATTTGGCATCTCCTCCGACGGCCTCTCCACCCTCGAAAAGTTGTACGGAAAACCAGTGATACTTGCGGATAGAGAAACGGTGGAGGAGAGGGCCGACCAGATTCTAACTGCAGCTGCTGCTTCCGACGTCGCCTTCCTTGTCGTTGGCGATCCTTTTGGAGCTACGACACACACTGATCTTGTCGTTCGAGCCAAGAAGTTGGGGATTGATGTCAAGGTGGTGCACAATGCGTCGGTGATGAATGCAGTTGGAGCCTGTGGATTACAACTCTACCACTATGGAGAGACAGTTTCAATACCATTCTTCACCGAGACATGGAGGCCTGATAGCTTTTATGAGAAGATTCAGAAAAATCGTGCGCTTGGTCTGCATACCCTATGCTTGTTAGACATACGGGTGAAGGAACCGACTCTGGAATCGTTGTGCAGGCTTATTTTTGTTACTTGCCTCCCCTTCAGAGGAAAGAAGCAGTATGAACCGCCTAGATATATGTCGATAAACACTGCAATTGAGCAGCTTCTGGAGGTTGAGCACAATCGAGGAGAATCTGCATATAATGAAGACACGATGTGTGTTGGGCTTGCGCGGCTGGGAAGTGAGGATCAGAAGATCGTTTCTGGTACGATGAGGCAACTGCAGTCGGTTGATTTTGGAGCACCTCTCCATTGCCTTGTTATTGTAGGCAAAACTCATCCAGTGGAAGAAGAAATGCTGGATTTTTACAGACATTCGGAAGAGAATAATCATGGCACTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004164 GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0016740 GO:0016741 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032259 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

292

Amino Acids

32.34

Weight (kDa)

5.42

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31790 AT4G31790
fragaria_vesca	FvH4_2g38650 FvH4_2g38650 FvH4_2g38650 FvH4_2g38650
malus_domestica	MD08G1014100.v1.1 MD15G1013600.v1.1
prunus_persica	Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1 Prupe.1G367100_v2.0.a1
pyrus_communis	pycom08g01280 pycom15g01180
rosa_chinensis	RchiOBHm_Chr6g0302671 RchiOBHm_Chr7g0221331
rosa_laevigata	RLG00000002161 RLG00000011149
rosa_multiflora	Rmu_co8296669.1_g000001 Rmu_sc0005455.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238400 Rroxscaffold_7G00165450
rosa_rugosa	Rorug06G0316000 Rorug07G0202200
rosa_samantha	Rh6AG429300 Rh6BG473200 Rh6CG441600 Rh6DG428400 Rh7AG341400 Rh7BG332400 Rh7CG359300
rosa_wichuraiana	Rw6G037160 Rw7G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	246
AccII	CGCG	1 cut(s)	703
AciI	CCGC	3 cut(s)	182, 596, 703
AclWI	GGATC	2 cut(s)	260, 726
AcsI	RAATTY	1 cut(s)	84
AcuI	CTGAAG	1 cut(s)	556
AcyI	GRCGYC	1 cut(s)	243
AdeI	CACNNNGTG	1 cut(s)	687
AfaI	GTAC	3 cut(s)	8, 161, 739
AfiI	CCNNNNNNNGG	2 cut(s)	432, 575
AgsI	TTSAA	1 cut(s)	411
AluBI	AGCT	4 cut(s)	230, 278, 447, 634
AluI	AGCT	4 cut(s)	230, 278, 447, 634
Alw21I	GWGCWC	3 cut(s)	342, 651, 775
Alw26I	GTCTC	2 cut(s)	395, 422
Alw44I	GTGCAC	1 cut(s)	338
AlwI	GGATC	2 cut(s)	260, 726
AlwNI	CAGNNNCTG	2 cut(s)	233, 637
AoxI	GGCC	3 cut(s)	136, 207, 437
ApaLI	GTGCAC	1 cut(s)	338
ApeKI	GCWGC	4 cut(s)	227, 230, 233, 631
ApoI	RAATTY	1 cut(s)	84
AspLEI	GCGC	2 cut(s)	478, 703
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	3 cut(s)	364, 415, 526
BaeGI	GKGCMC	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	684
Bbv12I	GWGCWC	3 cut(s)	342, 651, 775
BbvI	GCAGC	4 cut(s)	217, 220, 239, 643
BceAI	ACGGC	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	395, 422
BfaI	CTAG	1 cut(s)	600
BfmI	CTRYAG	2 cut(s)	225, 752
BisI	GCNGC	5 cut(s)	228, 231, 234, 632, 704
BlsI	GCNGC	5 cut(s)	229, 232, 235, 633, 705
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	2 cut(s)	370, 522
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	29
BpiI	GAAGAC	1 cut(s)	684
BplI	GAGNNNNNCTC	2 cut(s)	762, 794
BpmI	CTGGAG	1 cut(s)	659
BsaHI	GRCGYC	1 cut(s)	243
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 390, 420
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 575
Bse1I	ACTGG	3 cut(s)	24, 170, 812
Bse3DI	GCAATG	1 cut(s)	781
BseGI	GGATG	1 cut(s)	808
BseLI	CCNNNNNNNGG	2 cut(s)	432, 575
BseMI	GCAATG	1 cut(s)	781
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	3 cut(s)	24, 170, 812
BseRI	GAGGAG	4 cut(s)	101, 118, 215, 672
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	4 cut(s)	217, 220, 239, 643
BseYI	CCCAGC	1 cut(s)	706
BsgI	GTGCAG	1 cut(s)	562
Bsh1236I	CGCG	1 cut(s)	703
BshFI	GGCC	3 cut(s)	138, 209, 439
BsiHKAI	GWGCWC	3 cut(s)	342, 651, 775
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	432, 575
BsmAI	GTCTC	2 cut(s)	395, 422
BsmFI	GGGAC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	3 cut(s)	138, 209, 439
Bsp1286I	GDGCHC	3 cut(s)	342, 651, 775
Bsp1407I	TGTACA	1 cut(s)	6
Bsp143I	GATC	4 cut(s)	265, 292, 718, 726
BspACI	CCGC	3 cut(s)	182, 596, 703
BspANI	GGCC	3 cut(s)	138, 209, 439
BspCNI	CTCAG	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	703
BspLI	GGNNCC	2 cut(s)	370, 522
BspMAI	CTGCAG	2 cut(s)	229, 756
BspPI	GGATC	2 cut(s)	260, 726
BsrDI	GCAATG	1 cut(s)	781
BsrGI	TGTACA	1 cut(s)	6
BsrI	ACTGG	3 cut(s)	24, 170, 812
BssMI	GATC	4 cut(s)	265, 292, 718, 726
BssNI	GRCGYC	1 cut(s)	243
Bst4CI	ACNGT	3 cut(s)	196, 406, 871
Bst6I	CTCTTC	1 cut(s)	846
BstACI	GRCGYC	1 cut(s)	243
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstAUI	TGTACA	1 cut(s)	6
BstC8I	GCNNGC	2 cut(s)	545, 699
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	808
BstFNI	CGCG	1 cut(s)	703
BstHHI	GCGC	2 cut(s)	478, 703
BstKTI	GATC	4 cut(s)	268, 295, 721, 729
BstMAI	GTCTC	2 cut(s)	395, 422
BstMBI	GATC	4 cut(s)	265, 292, 718, 726
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 368, 484, 703
BstSFI	CTRYAG	2 cut(s)	225, 752
BstSLI	GKGCMC	1 cut(s)	342
BstUI	CGCG	1 cut(s)	703
BstV1I	GCAGC	4 cut(s)	217, 220, 239, 643
BstV2I	GAAGAC	1 cut(s)	684
BstXI	CCANNNNNNTGG	1 cut(s)	316
BsuRI	GGCC	3 cut(s)	138, 209, 439
BtsCI	GGATG	1 cut(s)	808
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	5 cut(s)	177, 288, 618, 819, 867
Cac8I	GCNNGC	2 cut(s)	545, 699
CaiI	CAGNNNCTG	2 cut(s)	233, 637
CfoI	GCGC	2 cut(s)	478, 703
Cfr13I	GGNCC	1 cut(s)	207
CseI	GACGC	1 cut(s)	336
Csp6I	GTAC	3 cut(s)	7, 160, 738
CviAII	CATG	2 cut(s)	432, 863
CviQI	GTAC	3 cut(s)	7, 160, 738
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	4 cut(s)	267, 294, 720, 728
DpnII	GATC	4 cut(s)	265, 292, 718, 726
DraIII	CACNNNGTG	1 cut(s)	687
Eam1104I	CTCTTC	1 cut(s)	846
EarI	CTCTTC	1 cut(s)	846
Eco147I	AGGCCT	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	556
FaeI	CATG	2 cut(s)	435, 866
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	2 cut(s)	431, 862
Fnu4HI	GCNGC	5 cut(s)	228, 231, 234, 632, 704
FokI	GGATG	1 cut(s)	795
Fsp4HI	GCNGC	5 cut(s)	228, 231, 234, 632, 704
FspBI	CTAG	1 cut(s)	600
GlaI	GCGC	2 cut(s)	477, 702
GluI	GCNGC	5 cut(s)	228, 231, 234, 632, 704
GsaI	CCCAGC	1 cut(s)	710
GsuI	CTGGAG	1 cut(s)	659
HaeIII	GGCC	3 cut(s)	138, 209, 439
HgaI	GACGC	1 cut(s)	336
HhaI	GCGC	2 cut(s)	478, 703
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	435, 866
Hin6I	GCGC	2 cut(s)	476, 701
HinP1I	GCGC	2 cut(s)	476, 701
HinfI	GANTC	5 cut(s)	217, 460, 526, 533, 662
HphI	GGTGA	3 cut(s)	364, 415, 526
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	7 cut(s)	51, 133, 241, 465, 575, 723, 850
Hpy188III	TCNNGA	2 cut(s)	530, 638
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	4 cut(s)	137, 245, 248, 352
HpyAV	CCTTC	3 cut(s)	259, 511, 580
HpyCH4III	ACNGT	3 cut(s)	196, 406, 871
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	8 cut(s)	227, 340, 362, 487, 543, 623, 668, 754
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 368, 484, 703
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	435, 866
HspAI	GCGC	2 cut(s)	476, 701
Kzo9I	GATC	4 cut(s)	265, 292, 718, 726
LmnI	GCTCC	3 cut(s)	275, 368, 770
Lsp1109I	GCAGC	4 cut(s)	217, 220, 239, 643
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	4 cut(s)	267, 294, 720, 728
MboI	GATC	4 cut(s)	265, 292, 718, 726
MboII	GAAGA	8 cut(s)	82, 412, 469, 689, 736, 830, 833, 863
MfeI	CAATTG	1 cut(s)	624
MhlI	GDGCHC	3 cut(s)	342, 651, 775
MluCI	AATT	2 cut(s)	84, 624
MlyI	GAGTC	1 cut(s)	520
MmeI	TCCRAC	3 cut(s)	156, 264, 346
MslI	CAYNNNNRTG	1 cut(s)	512
MspA1I	CMGCKG	1 cut(s)	230
MunI	CAATTG	1 cut(s)	624
Mva1269I	GAATGC	1 cut(s)	364
MvnI	CGCG	1 cut(s)	703
MwoI	GCNNNNNNNGC	4 cut(s)	233, 368, 484, 703
NdeII	GATC	4 cut(s)	265, 292, 718, 726
NlaIII	CATG	2 cut(s)	435, 866
NlaIV	GGNNCC	2 cut(s)	370, 522
PceI	AGGCCT	1 cut(s)	439
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	4 cut(s)	217, 460, 533, 662
PkrI	GCNGC	5 cut(s)	229, 232, 235, 633, 705
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PspFI	CCCAGC	1 cut(s)	706
PspN4I	GGNNCC	2 cut(s)	370, 522
PspPI	GGNCC	1 cut(s)	207
PstI	CTGCAG	2 cut(s)	229, 756
PstNI	CAGNNNCTG	2 cut(s)	233, 637
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	3 cut(s)	8, 161, 739
RsaNI	GTAC	3 cut(s)	7, 160, 738
RseI	CAYNNNNRTG	1 cut(s)	512
SatI	GCNGC	5 cut(s)	228, 231, 234, 632, 704
Sau3AI	GATC	4 cut(s)	265, 292, 718, 726
Sau96I	GGNCC	1 cut(s)	207
SchI	GAGTC	1 cut(s)	520
SduI	GDGCHC	3 cut(s)	342, 651, 775
SetI	ASST	8 cut(s)	232, 246, 280, 336, 449, 636, 645, 778
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	2 cut(s)	225, 752
SmiMI	CAYNNNNRTG	1 cut(s)	512
Sse9I	AATT	2 cut(s)	84, 624
SseBI	AGGCCT	1 cut(s)	439
SsiI	CCGC	3 cut(s)	182, 596, 703
SspMI	CTAG	1 cut(s)	600
StuI	AGGCCT	1 cut(s)	439
TaaI	ACNGT	3 cut(s)	196, 406, 871
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	5 cut(s)	93, 150, 304, 611, 655
TasI	AATT	2 cut(s)	84, 624
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	1 cut(s)	706
TfiI	GAWTC	4 cut(s)	217, 460, 533, 662
TscAI	CASTG	5 cut(s)	177, 295, 625, 819, 874
TseI	GCWGC	4 cut(s)	227, 230, 233, 631
TspDTI	ATGAA	4 cut(s)	79, 371, 606, 690
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	5 cut(s)	177, 295, 625, 819, 874
VneI	GTGCAC	1 cut(s)	338
XapI	RAATTY	1 cut(s)	84
XspI	CTAG	1 cut(s)	600
ZraI	GACGTC	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.