AT4G32030

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012225
Physical Location & Seq
Forward (+)
15490566 .. 15493436
2871 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G32030.2

Sequence Viewer

Length: 762 bp
ATGAAGAAGGTTACATCGTCTAAGATTCCGGCCAAGGATGATTGGGTGGCTGTAGCGATAACTGACGACGATTTGGTCGTTGAGCTTCTTTTACGGCTGAAGCATGCCGGAACGGTAGTGTCGGATAATCCGGCGGTGATTCTCCCTCCGTTGCGGTGGGGAATCCGTCAACGACGGTCTCGTTCCTCAAGATTTGGTGGCGGCGGCGGCGTTCTCGTTTCCTTGAAGAAAGATGTCGATTCCGTTAGAGCCAGTCCGAAGACTCCTCTCTCGTGGAGCGGCGGATCTGGAAGTGGTGGCGGCTCTGCTTCTCCTTCCGCCGATGGATTCGAGGATAACAGTCGCCAAGCTAGCTGCTCTACATCTACAGGATCTGGATCTAAGGTTTTTCCCACAAACGAAATCACCAGTTGTTTCTCCAAGAGATTGAAGAAGAGGAAGTCATCTTTTGAGCTTAAAAATGAAGAGAACTTGAAGTTGAAGGAGAGACTTGACCTTGAAAAGGAGATTGCAAGTCTCCGAGCAACATTCGATGAACAAAACCTTAGGAACCAAAAGCTGAAGAGGATTAAGCTTGACTTAAACTCAGGCCGTGTCACAAACAAGAAACCTGTTGATTTGATTCGTAAATCACAACTCGAGCGGCTACAGGGATCAAAATCTTGCAAAACCAGTGACTCGCAAAATCAGGGGAGTTTCTTCGTCCTCCCTGATCTCAACATGGCGCCATCCGAGGAAGAGATATTGTACGGAACTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

27.64

Weight (kDa)

9.75

Isoelectric Point (pI)

54.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32030 AT4G32030
fragaria_vesca FvH4_2g28270 FvH4_2g28270
malus_domestica MD08G1154000.v1.1 MD15G1131300.v1.1
prunus_persica Prupe.1G486600_v2.0.a1
pyrus_communis pycom08g13350 pycom15g11840
rosa_chinensis RchiOBHm_Chr6g0297181
rosa_laevigata RLG00000011624
rosa_multiflora Rmu_sc0001574.1_g000005
rosa_roxburghii Rroxscaffold_7G00170810
rosa_rugosa Rorug06G0269600
rosa_samantha Rh6AG380700 Rh6BG388800 Rh6CG394100 Rh6DG380700
rosa_wichuraiana Rw6G033150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 724
AccBSI CCGCTC 2 cut(s) 279, 643
AclWI GGATC 4 cut(s) 292, 379, 385, 661
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 2 cut(s) 119, 581
AcyI GRCGYC 1 cut(s) 725
AfaI GTAC 1 cut(s) 749
AfiI CCNNNNNNNGG 1 cut(s) 502
AgsI TTSAA 5 cut(s) 226, 430, 475, 481, 500
AluBI AGCT 7 cut(s) 85, 350, 354, 454, 559, 574, 759
AluI AGCT 7 cut(s) 85, 350, 354, 454, 559, 574, 759
Alw26I GTCTC 3 cut(s) 183, 481, 521
AlwI GGATC 4 cut(s) 292, 379, 385, 661
AlwNI CAGNNNCTG 1 cut(s) 374
Ama87I CYCGRG 1 cut(s) 638
AoxI GGCC 2 cut(s) 30, 589
ApeKI GCWGC 1 cut(s) 354
AspLEI GCGC 1 cut(s) 727
AsuHPI GGTGA 2 cut(s) 148, 397
AsuNHI GCTAGC 1 cut(s) 350
AvaI CYCGRG 1 cut(s) 638
AxyI CCTNAGG 1 cut(s) 545
BanI GGYRCC 1 cut(s) 724
BauI CACGAG 1 cut(s) 271
BbsI GAAGAC 1 cut(s) 266
BbvI GCAGC 1 cut(s) 341
BccI CCATC 2 cut(s) 317, 736
BceAI ACGGC 2 cut(s) 110, 576
BcoDI GTCTC 3 cut(s) 183, 481, 521
BfaI CTAG 2 cut(s) 351, 756
BfmI CTRYAG 3 cut(s) 51, 366, 647
BfoI RGCGCY 1 cut(s) 728
BisI GCNGC 7 cut(s) 202, 205, 208, 280, 301, 355, 644
BlsI GCNGC 7 cut(s) 203, 206, 209, 281, 302, 356, 645
BmeT110I CYCGRG 1 cut(s) 638
BmiI GGNNCC 2 cut(s) 551, 726
BmtI GCTAGC 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 172
BsaBI GATNNNNATC 2 cut(s) 376, 658
BsaHI GRCGYC 1 cut(s) 725
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 33, 732
Bsc4I CCNNNNNNNGG 1 cut(s) 502
Bse1I ACTGG 3 cut(s) 252, 408, 672
Bse21I CCTNAGG 1 cut(s) 545
Bse8I GATNNNNATC 2 cut(s) 376, 658
BseDI CCNNGG 2 cut(s) 33, 732
BseGI GGATG 2 cut(s) 43, 728
BseJI GATNNNNATC 2 cut(s) 376, 658
BseLI CCNNNNNNNGG 1 cut(s) 502
BseMII CTCAG 1 cut(s) 600
BseNI ACTGG 3 cut(s) 252, 408, 672
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 341
BshFI GGCC 2 cut(s) 32, 591
BshNI GGYRCC 1 cut(s) 724
BsiHKCI CYCGRG 1 cut(s) 638
BsiSI CCGG 3 cut(s) 29, 108, 131
BslI CCNNNNNNNGG 1 cut(s) 502
BsmAI GTCTC 3 cut(s) 183, 481, 521
BsnI GGCC 2 cut(s) 32, 591
Bso31I GGTCTC 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 638
Bsp143I GATC 5 cut(s) 284, 371, 377, 653, 712
BspANI GGCC 2 cut(s) 32, 591
BspCNI CTCAG 1 cut(s) 599
BspLI GGNNCC 2 cut(s) 551, 726
BspOI GCTAGC 1 cut(s) 354
BspPI GGATC 4 cut(s) 292, 379, 385, 661
BspT107I GGYRCC 1 cut(s) 724
BspTNI GGTCTC 1 cut(s) 183
BsrBI CCGCTC 2 cut(s) 279, 643
BsrI ACTGG 3 cut(s) 252, 408, 672
BssECI CCNNGG 2 cut(s) 33, 732
BssMI GATC 5 cut(s) 284, 371, 377, 653, 712
BssNI GRCGYC 1 cut(s) 725
BssSI CACGAG 1 cut(s) 271
BssT1I CCWWGG 1 cut(s) 33
Bst2BI CACGAG 1 cut(s) 271
Bst4CI ACNGT 3 cut(s) 115, 177, 341
Bst6I CTCTTC 4 cut(s) 428, 459, 557, 732
BstACI GRCGYC 1 cut(s) 725
BstC8I GCNNGC 2 cut(s) 105, 352
BstDEI CTNAG 4 cut(s) 21, 381, 545, 586
BstENI CCTNNNNNAGG 1 cut(s) 500
BstF5I GGATG 2 cut(s) 43, 728
BstH2I RGCGCY 1 cut(s) 728
BstHHI GCGC 1 cut(s) 727
BstKTI GATC 5 cut(s) 287, 374, 380, 656, 715
BstMAI GTCTC 3 cut(s) 183, 481, 521
BstMBI GATC 5 cut(s) 284, 371, 377, 653, 712
BstMWI GCNNNNNNNGC 2 cut(s) 207, 351
BstNSI RCATGY 1 cut(s) 107
BstSFI CTRYAG 3 cut(s) 51, 366, 647
BstV1I GCAGC 1 cut(s) 341
BstV2I GAAGAC 1 cut(s) 266
BstX2I RGATCY 3 cut(s) 284, 371, 377
BstYI RGATCY 3 cut(s) 284, 371, 377
Bsu36I CCTNAGG 1 cut(s) 545
BsuRI GGCC 2 cut(s) 32, 591
BtsCI GGATG 2 cut(s) 43, 728
BtsIMutI CAGTG 1 cut(s) 679
Cac8I GCNNGC 2 cut(s) 105, 352
CaiI CAGNNNCTG 1 cut(s) 374
CfoI GCGC 1 cut(s) 727
Csp6I GTAC 1 cut(s) 748
CviAII CATG 2 cut(s) 104, 721
CviQI GTAC 1 cut(s) 748
DdeI CTNAG 4 cut(s) 21, 381, 545, 586
DinI GGCGCC 1 cut(s) 726
DpnI GATC 5 cut(s) 286, 373, 379, 655, 714
DpnII GATC 5 cut(s) 284, 371, 377, 653, 712
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 4 cut(s) 428, 459, 557, 732
EarI CTCTTC 4 cut(s) 428, 459, 557, 732
EciI GGCGGA 2 cut(s) 297, 307
Eco130I CCWWGG 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 183
Eco57I CTGAAG 2 cut(s) 119, 581
Eco81I CCTNAGG 1 cut(s) 545
Eco88I CYCGRG 1 cut(s) 638
EcoNI CCTNNNNNAGG 1 cut(s) 500
EcoT14I CCWWGG 1 cut(s) 33
EgeI GGCGCC 1 cut(s) 726
EheI GGCGCC 1 cut(s) 726
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 2 cut(s) 107, 724
FaiI YATR 2 cut(s) 105, 722
FalI AAGNNNNNCTT 2 cut(s) 563, 595
FatI CATG 2 cut(s) 103, 720
Fnu4HI GCNGC 7 cut(s) 202, 205, 208, 280, 301, 355, 644
FokI GGATG 2 cut(s) 50, 715
Fsp4HI GCNGC 7 cut(s) 202, 205, 208, 280, 301, 355, 644
FspBI CTAG 2 cut(s) 351, 756
GlaI GCGC 1 cut(s) 726
GluI GCNGC 7 cut(s) 202, 205, 208, 280, 301, 355, 644
HaeII RGCGCY 1 cut(s) 728
HaeIII GGCC 2 cut(s) 32, 591
HapII CCGG 3 cut(s) 29, 108, 131
HhaI GCGC 1 cut(s) 727
Hin1I GRCGYC 1 cut(s) 725
Hin1II CATG 2 cut(s) 107, 724
Hin6I GCGC 1 cut(s) 725
HinP1I GCGC 1 cut(s) 725
HincII GTYRAC 1 cut(s) 170
HindII GTYRAC 1 cut(s) 170
HindIII AAGCTT 1 cut(s) 572
HinfI GANTC 8 cut(s) 25, 139, 162, 239, 262, 327, 622, 677
HpaII CCGG 3 cut(s) 29, 108, 131
HphI GGTGA 2 cut(s) 148, 397
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 4 cut(s) 124, 258, 521, 733
Hpy188III TCNNGA 3 cut(s) 189, 288, 375
Hpy8I GTNNAC 1 cut(s) 170
Hpy99I CGWCG 2 cut(s) 71, 177
HpyAV CCTTC 2 cut(s) 324, 475
HpyCH4III ACNGT 3 cut(s) 115, 177, 341
HpyCH4V TGCA 2 cut(s) 512, 666
HpyF10VI GCNNNNNNNGC 2 cut(s) 207, 351
HpyF3I CTNAG 4 cut(s) 21, 381, 545, 586
Hsp92I GRCGYC 1 cut(s) 725
Hsp92II CATG 2 cut(s) 107, 724
HspAI GCGC 1 cut(s) 725
KasI GGCGCC 1 cut(s) 724
Kzo9I GATC 5 cut(s) 284, 371, 377, 653, 712
LmnI GCTCC 1 cut(s) 276
Lsp1109I GCAGC 1 cut(s) 341
MaeI CTAG 2 cut(s) 351, 756
MaeIII GTNAC 3 cut(s) 10, 595, 674
MalI GATC 5 cut(s) 286, 373, 379, 655, 714
MbiI CCGCTC 2 cut(s) 279, 643
MboI GATC 5 cut(s) 284, 371, 377, 653, 712
MboII GAAGA 9 cut(s) 16, 238, 271, 442, 445, 476, 574, 691, 749
MflI RGATCY 3 cut(s) 284, 371, 377
Mly113I GGCGCC 1 cut(s) 725
MlyI GAGTC 2 cut(s) 256, 671
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 8 cut(s) 156, 196, 276, 325, 429, 558, 716, 727
MseI TTAA 3 cut(s) 456, 570, 581
MspI CCGG 3 cut(s) 29, 108, 131
MwoI GCNNNNNNNGC 2 cut(s) 207, 351
NarI GGCGCC 1 cut(s) 725
NdeII GATC 5 cut(s) 284, 371, 377, 653, 712
NheI GCTAGC 1 cut(s) 350
NlaIII CATG 2 cut(s) 107, 724
NlaIV GGNNCC 2 cut(s) 551, 726
NmuCI GTSAC 2 cut(s) 595, 674
NspI RCATGY 1 cut(s) 107
PaeI GCATGC 1 cut(s) 107
PaeR7I CTCGAG 1 cut(s) 638
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 178
PfeI GAWTC 6 cut(s) 25, 139, 162, 239, 327, 622
PkrI GCNGC 7 cut(s) 203, 206, 209, 281, 302, 356, 645
PleI GAGTC 2 cut(s) 256, 671
PluTI GGCGCC 1 cut(s) 728
PpsI GAGTC 2 cut(s) 256, 671
PspN4I GGNNCC 2 cut(s) 551, 726
PspXI VCTCGAGB 1 cut(s) 638
PstNI CAGNNNCTG 1 cut(s) 374
PsuI RGATCY 3 cut(s) 284, 371, 377
RsaI GTAC 1 cut(s) 749
RsaNI GTAC 1 cut(s) 748
SaqAI TTAA 3 cut(s) 456, 570, 581
SatI GCNGC 7 cut(s) 202, 205, 208, 280, 301, 355, 644
Sau3AI GATC 5 cut(s) 284, 371, 377, 653, 712
SchI GAGTC 2 cut(s) 256, 671
SfcI CTRYAG 3 cut(s) 51, 366, 647
SfoI GGCGCC 1 cut(s) 726
Sfr274I CTCGAG 1 cut(s) 638
SlaI CTCGAG 1 cut(s) 638
SmlI CTYRAG 2 cut(s) 187, 638
SmoI CTYRAG 2 cut(s) 187, 638
SphI GCATGC 1 cut(s) 107
SspDI GGCGCC 1 cut(s) 724
SspMI CTAG 2 cut(s) 351, 756
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 3 cut(s) 115, 177, 341
TaqI TCGA 4 cut(s) 237, 330, 531, 639
TauI GCSGC 6 cut(s) 204, 207, 210, 282, 303, 646
TfiI GAWTC 6 cut(s) 25, 139, 162, 239, 327, 622
Tru1I TTAA 3 cut(s) 456, 570, 581
Tru9I TTAA 3 cut(s) 456, 570, 581
TscAI CASTG 1 cut(s) 679
TseFI GTSAC 2 cut(s) 595, 674
TseI GCWGC 1 cut(s) 354
Tsp45I GTSAC 2 cut(s) 595, 674
TspDTI ATGAA 3 cut(s) 17, 477, 549
TspGWI ACGGA 3 cut(s) 138, 155, 232
TspRI CASTG 1 cut(s) 679
XagI CCTNNNNNAGG 1 cut(s) 500
XceI RCATGY 1 cut(s) 107
XhoI CTCGAG 1 cut(s) 638
XspI CTAG 2 cut(s) 351, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.