pycom15g11840

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012225
Physical Location & Seq
Reverse (-)
8008092 .. 8010873
2782 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g11840.3

Sequence Viewer

Length: 831 bp
ATGGTGGTTCAAGACGATTGGACGAGGGCGGCGATGACCGATGACGTGCTCGTGGTCGAGCTACTGCTGCGGCTCAAGCAGGTGCAGGCGGCGGGGCCGTCGTCTTCGCTGCGGTCTTCGTCTCCGATGTCGCAGTCTCTTTTGACGCTCAGGTGGGGTGTAAGGATGCCACGCTCCAAAGCGGCGTCGTCCGGTTCCAGATTCGACGGCGGCGTCTCACACCAGAGGAACAGCGGCAAGAACGGCGCCGATTCCACCACTAGATGCAGCCCCACGACTCCGCTTTCATGGAGCGGCGGTACCGGCTCTCTATCCGCCACCGCCGACGGCTTTGAAGAGTCCAGCTGCCCCAGATCCAAGGGTAATGGTACATATGAATCCACCAGCACCACCAATGCCGCCAAGAGGGCAAGGAGAAAGAAGACATATGCTGAGCTTAAAGAGCAGGAAAGTTCGTTGTTGAAGGAAAGGACACATCTGGAAAAGGAAATAGCGACCTTGCAAGCAACTTTCAAGGAGCAAAGAGCCAAAAATGACAACTTTAAGAGAATCAAGATTGATTTGAACTTGCATTCTGCAAGGAATTTGAGTGCAAACTTTGACGGAGCAGGGAAAGCAATTTCCAGCCAACCCCATGAGAGAATAGCTTCTTCGAGTAACACTGCATACTACATTCCTTCGGATTTGCCTCCACGTCCACACCCGCAATTGGATTCTTGCGTTGAAAGCAATGATGCTCCGGCCCCGGATAATTCCTTCTTGCTGCCTGATTTGAACATGGTGCCGGCAGTTGAAGAATCCAGTTCCGAAATGCTGTATGGGATGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

29.95

Weight (kDa)

8.72

Isoelectric Point (pI)

60.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32030 AT4G32030
fragaria_vesca FvH4_2g28270 FvH4_2g28270
malus_domestica MD08G1154000.v1.1 MD15G1131300.v1.1
prunus_persica Prupe.1G486600_v2.0.a1
pyrus_communis pycom08g13350 pycom15g11840
rosa_chinensis RchiOBHm_Chr6g0297181
rosa_laevigata RLG00000011624
rosa_multiflora Rmu_sc0001574.1_g000005
rosa_roxburghii Rroxscaffold_7G00170810
rosa_rugosa Rorug06G0269600
rosa_samantha Rh6AG380700 Rh6BG388800 Rh6CG394100 Rh6DG380700
rosa_wichuraiana Rw6G033150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 70
AasI GACNNNNNNGTC 1 cut(s) 212
Acc36I ACCTGC 1 cut(s) 70
Acc65I GGTACC 1 cut(s) 299
AccB1I GGYRCC 3 cut(s) 245, 299, 781
AccBSI CCGCTC 1 cut(s) 294
AclWI GGATC 1 cut(s) 348
AcsI RAATTY 1 cut(s) 583
AcyI GRCGYC 3 cut(s) 185, 213, 246
AfaI GTAC 2 cut(s) 301, 370
AfiI CCNNNNNNNGG 2 cut(s) 405, 709
AgsI TTSAA 8 cut(s) 11, 335, 463, 514, 565, 725, 775, 794
AjiI CACGTC 2 cut(s) 46, 695
AluBI AGCT 5 cut(s) 61, 345, 436, 647, 828
AluI AGCT 5 cut(s) 61, 345, 436, 647, 828
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 3 cut(s) 126, 141, 220
AlwI GGATC 1 cut(s) 348
AoxI GGCC 2 cut(s) 95, 741
ApeKI GCWGC 5 cut(s) 67, 109, 267, 345, 763
ApoI RAATTY 1 cut(s) 583
Asp700I GAANNNNTTC 1 cut(s) 646
Asp718I GGTACC 1 cut(s) 299
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 2 cut(s) 95, 742
AsuC2I CCSGG 1 cut(s) 746
BanI GGYRCC 3 cut(s) 245, 299, 781
BauI CACGAG 1 cut(s) 50
BbsI GAAGAC 3 cut(s) 96, 108, 428
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 5 cut(s) 54, 96, 279, 332, 750
BceAI ACGGC 4 cut(s) 82, 223, 259, 343
BcnI CCSGG 1 cut(s) 746
BcoDI GTCTC 3 cut(s) 126, 141, 220
BfaI CTAG 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 70
BglI GCCNNNNNGGC 1 cut(s) 407
BlpI GCTNAGC 1 cut(s) 432
Bme1390I CCNGG 1 cut(s) 746
BmgBI CACGTC 2 cut(s) 46, 695
BmgT120I GGNCC 2 cut(s) 95, 742
BmiI GGNNCC 6 cut(s) 96, 196, 247, 301, 744, 783
BmrFI CCNGG 1 cut(s) 746
BmsI GCATC 3 cut(s) 156, 254, 724
BpiI GAAGAC 3 cut(s) 96, 108, 428
Bpu10I CCTNAGC 1 cut(s) 149
Bpu1102I GCTNAGC 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 746
BsaHI GRCGYC 3 cut(s) 185, 213, 246
BsaJI CCNNGG 2 cut(s) 357, 744
BsaWI WCCGGW 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bsc4I CCNNNNNNNGG 2 cut(s) 405, 709
Bse118I RCCGGY 2 cut(s) 302, 784
Bse1I ACTGG 1 cut(s) 801
Bse3DI GCAATG 1 cut(s) 736
BseDI CCNNGG 2 cut(s) 357, 744
BseGI GGATG 2 cut(s) 171, 828
BseLI CCNNNNNNNGG 2 cut(s) 405, 709
BseMI GCAATG 1 cut(s) 736
BseMII CTCAG 2 cut(s) 163, 423
BseNI ACTGG 1 cut(s) 801
BseXI GCAGC 5 cut(s) 54, 96, 279, 332, 750
BsgI GTGCAG 1 cut(s) 104
BshFI GGCC 2 cut(s) 97, 743
BshNI GGYRCC 3 cut(s) 245, 299, 781
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 5 cut(s) 192, 303, 740, 746, 785
BslI CCNNNNNNNGG 2 cut(s) 405, 709
BsmAI GTCTC 3 cut(s) 126, 141, 220
BsmBI CGTCTC 2 cut(s) 126, 220
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 2 cut(s) 97, 743
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 1 cut(s) 353
Bsp1720I GCTNAGC 1 cut(s) 432
BspANI GGCC 2 cut(s) 97, 743
BspCNI CTCAG 2 cut(s) 162, 424
BspLI GGNNCC 6 cut(s) 96, 196, 247, 301, 744, 783
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 1 cut(s) 348
BspT107I GGYRCC 3 cut(s) 245, 299, 781
BsrBI CCGCTC 1 cut(s) 294
BsrDI GCAATG 1 cut(s) 736
BsrFI RCCGGY 2 cut(s) 302, 784
BsrI ACTGG 1 cut(s) 801
BssAI RCCGGY 2 cut(s) 302, 784
BssECI CCNNGG 2 cut(s) 357, 744
BssMI GATC 1 cut(s) 353
BssNI GRCGYC 3 cut(s) 185, 213, 246
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 357
Bst2BI CACGAG 1 cut(s) 50
Bst6I CTCTTC 1 cut(s) 330
BstACI GRCGYC 3 cut(s) 185, 213, 246
BstC8I GCNNGC 3 cut(s) 87, 504, 786
BstDEI CTNAG 2 cut(s) 149, 432
BstF5I GGATG 2 cut(s) 171, 828
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 1 cut(s) 356
BstMAI GTCTC 3 cut(s) 126, 141, 220
BstMBI GATC 1 cut(s) 353
BstMWI GCNNNNNNNGC 8 cut(s) 67, 76, 243, 303, 407, 442, 614, 726
BstSCI CCNGG 1 cut(s) 744
BstV1I GCAGC 5 cut(s) 54, 96, 279, 332, 750
BstV2I GAAGAC 3 cut(s) 96, 108, 428
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BsuRI GGCC 2 cut(s) 97, 743
BtgZI GCGATG 1 cut(s) 47
BtrI CACGTC 2 cut(s) 46, 695
BtsCI GGATG 2 cut(s) 171, 828
BtsI GCAGTG 1 cut(s) 660
BtsIMutI CAGTG 1 cut(s) 660
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 3 cut(s) 87, 504, 786
CfoI GCGC 1 cut(s) 248
Cfr10I RCCGGY 2 cut(s) 302, 784
Cfr13I GGNCC 2 cut(s) 95, 742
CseI GACGC 3 cut(s) 154, 174, 202
Csp6I GTAC 2 cut(s) 300, 369
CviAII CATG 3 cut(s) 288, 635, 778
CviQI GTAC 2 cut(s) 300, 369
DdeI CTNAG 2 cut(s) 149, 432
DinI GGCGCC 1 cut(s) 247
DpnI GATC 1 cut(s) 355
DpnII GATC 1 cut(s) 353
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
EciI GGCGGA 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 357
EgeI GGCGCC 1 cut(s) 247
EheI GGCGCC 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 357
Esp3I CGTCTC 2 cut(s) 126, 220
FaeI CATG 3 cut(s) 291, 638, 781
FaiI YATR 9 cut(s) 289, 373, 375, 427, 429, 636, 667, 779, 819
FatI CATG 3 cut(s) 287, 634, 777
FauI CCCGC 2 cut(s) 85, 711
FauNDI CATATG 2 cut(s) 373, 427
FokI GGATG 1 cut(s) 178
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 247
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 2 cut(s) 97, 743
HapII CCGG 5 cut(s) 192, 303, 740, 746, 785
HgaI GACGC 3 cut(s) 154, 174, 202
HhaI GCGC 1 cut(s) 248
Hin1I GRCGYC 3 cut(s) 185, 213, 246
Hin1II CATG 3 cut(s) 291, 638, 781
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HinfI GANTC 8 cut(s) 201, 251, 277, 338, 377, 549, 713, 797
HpaII CCGG 5 cut(s) 192, 303, 740, 746, 785
Hpy166II GTNNAC 1 cut(s) 698
Hpy188I TCNGA 3 cut(s) 126, 682, 808
Hpy188III TCNNGA 4 cut(s) 11, 198, 479, 553
Hpy8I GTNNAC 1 cut(s) 698
Hpy99I CGWCG 4 cut(s) 103, 190, 209, 329
HpyAV CCTTC 3 cut(s) 457, 687, 766
HpyCH4IV ACGT 2 cut(s) 45, 694
HpyCH4V TGCA 7 cut(s) 85, 267, 502, 571, 578, 593, 665
HpyF10VI GCNNNNNNNGC 8 cut(s) 67, 76, 243, 303, 407, 442, 614, 726
HpyF3I CTNAG 2 cut(s) 149, 432
HpySE526I ACGT 2 cut(s) 45, 694
Hsp92I GRCGYC 3 cut(s) 185, 213, 246
Hsp92II CATG 3 cut(s) 291, 638, 781
HspAI GCGC 1 cut(s) 246
KasI GGCGCC 1 cut(s) 245
KpnI GGTACC 1 cut(s) 303
KroI GCCGGC 1 cut(s) 784
KroNI GCCGGC 1 cut(s) 786
Kzo9I GATC 1 cut(s) 353
LmnI GCTCC 5 cut(s) 179, 291, 517, 605, 742
Lsp1109I GCAGC 5 cut(s) 54, 96, 279, 332, 750
LweI GCATC 3 cut(s) 156, 254, 724
MaeI CTAG 1 cut(s) 261
MaeII ACGT 2 cut(s) 45, 694
MaeIII GTNAC 1 cut(s) 656
MalI GATC 1 cut(s) 355
MbiI CCGCTC 1 cut(s) 294
MboI GATC 1 cut(s) 353
MboII GAAGA 6 cut(s) 96, 108, 347, 433, 642, 806
MfeI CAATTG 1 cut(s) 707
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 4 cut(s) 583, 618, 707, 751
Mly113I GGCGCC 1 cut(s) 246
MlyI GAGTC 2 cut(s) 271, 347
MnlI CCTC 4 cut(s) 18, 219, 399, 699
MroNI GCCGGC 1 cut(s) 784
MroXI GAANNNNTTC 1 cut(s) 646
MseI TTAA 2 cut(s) 438, 543
MspA1I CMGCKG 2 cut(s) 234, 345
MspI CCGG 5 cut(s) 192, 303, 740, 746, 785
MspR9I CCNGG 1 cut(s) 746
MunI CAATTG 1 cut(s) 707
Mva1269I GAATGC 1 cut(s) 571
MwoI GCNNNNNNNGC 8 cut(s) 67, 76, 243, 303, 407, 442, 614, 726
NaeI GCCGGC 1 cut(s) 786
NarI GGCGCC 1 cut(s) 246
NciI CCSGG 1 cut(s) 746
NdeI CATATG 2 cut(s) 373, 427
NdeII GATC 1 cut(s) 353
NgoMIV GCCGGC 1 cut(s) 784
NlaIII CATG 3 cut(s) 291, 638, 781
NlaIV GGNNCC 6 cut(s) 96, 196, 247, 301, 744, 783
PaqCI CACCTGC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 2 cut(s) 29, 210
PctI GAATGC 1 cut(s) 571
PdiI GCCGGC 1 cut(s) 786
PdmI GAANNNNTTC 1 cut(s) 646
PfeI GAWTC 6 cut(s) 201, 251, 377, 549, 713, 797
PleI GAGTC 2 cut(s) 271, 346
PluTI GGCGCC 1 cut(s) 249
PpsI GAGTC 2 cut(s) 271, 346
PspN4I GGNNCC 6 cut(s) 96, 196, 247, 301, 744, 783
PspPI GGNCC 2 cut(s) 95, 742
PsuI RGATCY 1 cut(s) 353
PvuII CAGCTG 1 cut(s) 345
RsaI GTAC 2 cut(s) 301, 370
RsaNI GTAC 2 cut(s) 300, 369
SaqAI TTAA 2 cut(s) 438, 543
Sau3AI GATC 1 cut(s) 353
Sau96I GGNCC 2 cut(s) 95, 742
SchI GAGTC 2 cut(s) 271, 347
ScrFI CCNGG 1 cut(s) 746
SduI GDGCHC 1 cut(s) 51
SfaNI GCATC 3 cut(s) 156, 254, 724
SfoI GGCGCC 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 4 cut(s) 583, 618, 707, 751
SspDI GGCGCC 1 cut(s) 245
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 744
StyI CCWWGG 1 cut(s) 357
TaiI ACGT 2 cut(s) 48, 697
TaqI TCGA 3 cut(s) 57, 204, 653
TaqII GACCGA 1 cut(s) 53
TasI AATT 4 cut(s) 583, 618, 707, 751
TauI GCSGC 8 cut(s) 32, 73, 92, 185, 213, 237, 297, 401
TfiI GAWTC 6 cut(s) 201, 251, 377, 549, 713, 797
Tru1I TTAA 2 cut(s) 438, 543
Tru9I TTAA 2 cut(s) 438, 543
TscAI CASTG 1 cut(s) 667
TseI GCWGC 5 cut(s) 67, 109, 267, 345, 763
TspDTI ATGAA 2 cut(s) 276, 390
TspGWI ACGGA 1 cut(s) 618
TspRI CASTG 1 cut(s) 667
XapI RAATTY 1 cut(s) 583
XmnI GAANNNNTTC 1 cut(s) 646
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.