MD08G1154000.v1.1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0012225
Physical Location & Seq
Reverse (-)
16857682 .. 16861115
3434 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1154000.v1.1.491

Sequence Viewer

Length: 813 bp
ATGTTGGTCAAGGACGAGTGGACGAGAGCGGCGATGACCGACGACGTGCTTGTCGTCGAGCTACTGCTGCGGCTCAAGCAGGCGCAGGCGGCGGGGCCTTCGTCTCCGATGTCGCAGTCTCTTTTGACGCTCAGGTGGGGTGTGAGGATGCTACGCTCCAAAGCGGCGTCGTCCGGTTCCAGATTCGATGGCGGCGTCTCGCATCAGAGGAGAAGCGGCAAGAACGGCGCCGATTCCACCACTAGATGCAGCCCAACGACGCCTCTCTCATGGAGCGGCGGCACCGGCTCTCCATCCGCCACCGCCGACGGCTTCGAAGAGTCTAGCTGCCCCAGATCCAAGGGCAATGCTACATATGAATCCACCAGCACCACCACTGGCACCAAGAGGGCAAGGAGAAAGAAGACATATGCTGAGCTAAAAGAGGAGGAAAGTTCGTTGTTGAAGGAAAGGACATATCTGGAAAAGGAAATAGCGACCTTACAAACAGCTTTCAAGGAGCAAAGAGCCAAAAATGACAACTTTAAGAGAATCAAGATTGATCTGAACTTGCATTCCGCAAGGAATTTGAGTGCAAACTTTGACGGAGCAGGGAAATCGATTTCCAGCCAACCCCATGAGAGAATAGCTTCTTCTAGTTCCACTGCCTGCTACATTCCTTCGGTTTTGCCTCCACGTCCACACCCGCGATTTGATTCTTGCGTTGAAAGCAATCCGGTGCTGGCCCGGGATAATTCCTTCCTGCTGCCTGATTTAAACATGGTTCCATCAGGCGAGGAATCGGGTTCCGAAATGCTACCCGGGATGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

29.36

Weight (kDa)

9.3

Isoelectric Point (pI)

61.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32030 AT4G32030
fragaria_vesca FvH4_2g28270 FvH4_2g28270
malus_domestica MD08G1154000.v1.1 MD15G1131300.v1.1
prunus_persica Prupe.1G486600_v2.0.a1
pyrus_communis pycom08g13350 pycom15g11840
rosa_chinensis RchiOBHm_Chr6g0297181
rosa_laevigata RLG00000011624
rosa_multiflora Rmu_sc0001574.1_g000005
rosa_roxburghii Rroxscaffold_7G00170810
rosa_rugosa Rorug06G0269600
rosa_samantha Rh6AG380700 Rh6BG388800 Rh6CG394100 Rh6DG380700
rosa_wichuraiana Rw6G033150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 50
AccB1I GGYRCC 3 cut(s) 227, 281, 380
AccBSI CCGCTC 2 cut(s) 29, 276
AccII CGCG 1 cut(s) 688
AclWI GGATC 1 cut(s) 330
AcsI RAATTY 1 cut(s) 565
AcyI GRCGYC 4 cut(s) 167, 195, 228, 260
AgsI TTSAA 3 cut(s) 445, 496, 707
AjiI CACGTC 2 cut(s) 46, 677
AloI GAACNNNNNNTCC 2 cut(s) 539, 571
AluBI AGCT 6 cut(s) 61, 327, 418, 491, 629, 810
AluI AGCT 6 cut(s) 61, 327, 418, 491, 629, 810
Alw26I GTCTC 3 cut(s) 108, 123, 202
AlwI GGATC 1 cut(s) 330
Ama87I CYCGRG 2 cut(s) 726, 800
AoxI GGCC 2 cut(s) 95, 723
ApeKI GCWGC 4 cut(s) 67, 249, 327, 745
ApoI RAATTY 1 cut(s) 565
Asp700I GAANNNNTTC 1 cut(s) 628
AspLEI GCGC 2 cut(s) 85, 230
AspS9I GGNCC 2 cut(s) 95, 724
AsuC2I CCSGG 4 cut(s) 727, 728, 801, 802
AsuII TTCGAA 1 cut(s) 315
AvaI CYCGRG 2 cut(s) 726, 800
BanI GGYRCC 3 cut(s) 227, 281, 380
BbsI GAAGAC 1 cut(s) 410
BbvI GCAGC 4 cut(s) 54, 261, 314, 732
BccI CCATC 3 cut(s) 182, 301, 775
BceAI ACGGC 2 cut(s) 241, 325
BcgI CGANNNNNNTGC 2 cut(s) 579, 613
BcnI CCSGG 4 cut(s) 727, 728, 801, 802
BcoDI GTCTC 3 cut(s) 108, 123, 202
BfaI CTAG 3 cut(s) 243, 324, 636
BfoI RGCGCY 1 cut(s) 231
BlpI GCTNAGC 1 cut(s) 414
Bme1390I CCNGG 4 cut(s) 727, 728, 801, 802
BmeT110I CYCGRG 2 cut(s) 726, 800
BmgBI CACGTC 2 cut(s) 46, 677
BmgT120I GGNCC 2 cut(s) 95, 724
BmiI GGNNCC 7 cut(s) 96, 178, 229, 283, 382, 765, 787
BmrFI CCNGG 4 cut(s) 727, 728, 801, 802
BmsI GCATC 3 cut(s) 138, 211, 236
BpiI GAAGAC 1 cut(s) 410
Bpu10I CCTNAGC 1 cut(s) 131
Bpu1102I GCTNAGC 1 cut(s) 414
Bpu14I TTCGAA 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 4 cut(s) 727, 728, 801, 802
Bsa29I ATCGAT 1 cut(s) 599
BsaHI GRCGYC 4 cut(s) 167, 195, 228, 260
BsaJI CCNNGG 3 cut(s) 339, 726, 800
BsaWI WCCGGW 2 cut(s) 173, 715
BsaXI ACNNNNNCTCC 2 cut(s) 274, 304
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 382
Bse3DI GCAATG 1 cut(s) 352
BseCI ATCGAT 1 cut(s) 599
BseDI CCNNGG 3 cut(s) 339, 726, 800
BseGI GGATG 3 cut(s) 153, 293, 810
BseMI GCAATG 1 cut(s) 352
BseMII CTCAG 2 cut(s) 145, 405
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 2 cut(s) 223, 440
BseXI GCAGC 4 cut(s) 54, 261, 314, 732
Bsh1236I CGCG 1 cut(s) 688
BshFI GGCC 2 cut(s) 97, 725
BshNI GGYRCC 3 cut(s) 227, 281, 380
BshVI ATCGAT 1 cut(s) 599
BsiHKCI CYCGRG 2 cut(s) 726, 800
BsiSI CCGG 5 cut(s) 174, 285, 716, 727, 801
BsmAI GTCTC 3 cut(s) 108, 123, 202
BsmBI CGTCTC 2 cut(s) 108, 202
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 2 cut(s) 97, 725
BsoBI CYCGRG 2 cut(s) 726, 800
Bsp119I TTCGAA 1 cut(s) 315
Bsp143I GATC 2 cut(s) 335, 541
Bsp1720I GCTNAGC 1 cut(s) 414
BspANI GGCC 2 cut(s) 97, 725
BspCNI CTCAG 2 cut(s) 144, 406
BspDI ATCGAT 1 cut(s) 599
BspFNI CGCG 1 cut(s) 688
BspLI GGNNCC 7 cut(s) 96, 178, 229, 283, 382, 765, 787
BspPI GGATC 1 cut(s) 330
BspT104I TTCGAA 1 cut(s) 315
BspT107I GGYRCC 3 cut(s) 227, 281, 380
BsrBI CCGCTC 2 cut(s) 29, 276
BsrDI GCAATG 1 cut(s) 352
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 3 cut(s) 339, 726, 800
BssMI GATC 2 cut(s) 335, 541
BssNI GRCGYC 4 cut(s) 167, 195, 228, 260
BssT1I CCWWGG 1 cut(s) 339
Bst6I CTCTTC 1 cut(s) 312
BstACI GRCGYC 4 cut(s) 167, 195, 228, 260
BstBI TTCGAA 1 cut(s) 315
BstC8I GCNNGC 4 cut(s) 81, 87, 649, 723
BstDEI CTNAG 2 cut(s) 131, 414
BstF5I GGATG 3 cut(s) 153, 293, 810
BstFNI CGCG 1 cut(s) 688
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 2 cut(s) 85, 230
BstKTI GATC 2 cut(s) 338, 544
BstMAI GTCTC 3 cut(s) 108, 123, 202
BstMBI GATC 2 cut(s) 335, 541
BstMWI GCNNNNNNNGC 6 cut(s) 67, 76, 89, 225, 285, 708
BstSCI CCNGG 4 cut(s) 725, 726, 799, 800
BstUI CGCG 1 cut(s) 688
BstV1I GCAGC 4 cut(s) 54, 261, 314, 732
BstV2I GAAGAC 1 cut(s) 410
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
Bsu15I ATCGAT 1 cut(s) 599
BsuRI GGCC 2 cut(s) 97, 725
BsuTUI ATCGAT 1 cut(s) 599
BtgZI GCGATG 1 cut(s) 47
BtrI CACGTC 2 cut(s) 46, 677
BtsCI GGATG 3 cut(s) 153, 293, 810
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 2 cut(s) 375, 642
Cac8I GCNNGC 4 cut(s) 81, 87, 649, 723
CfoI GCGC 2 cut(s) 85, 230
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 2 cut(s) 95, 724
Cfr9I CCCGGG 2 cut(s) 726, 800
ClaI ATCGAT 1 cut(s) 599
CseI GACGC 4 cut(s) 136, 156, 184, 268
CviAII CATG 3 cut(s) 270, 617, 760
DdeI CTNAG 2 cut(s) 131, 414
DinI GGCGCC 1 cut(s) 229
DpnI GATC 2 cut(s) 337, 543
DpnII GATC 2 cut(s) 335, 541
DraI TTTAAA 1 cut(s) 756
DrdI GACNNNNNNGTC 1 cut(s) 50
DseDI GACNNNNNNGTC 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
EciI GGCGGA 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 339
Eco88I CYCGRG 2 cut(s) 726, 800
EcoO109I RGGNCCY 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 339
EgeI GGCGCC 1 cut(s) 229
EheI GGCGCC 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 339
Esp3I CGTCTC 2 cut(s) 108, 202
FaeI CATG 3 cut(s) 273, 620, 763
FaiI YATR 8 cut(s) 271, 355, 357, 409, 411, 457, 618, 761
FatI CATG 3 cut(s) 269, 616, 759
FauI CCCGC 2 cut(s) 85, 693
FauNDI CATATG 2 cut(s) 355, 409
FokI GGATG 2 cut(s) 160, 280
FspBI CTAG 3 cut(s) 243, 324, 636
GlaI GCGC 2 cut(s) 84, 229
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 2 cut(s) 97, 725
HapII CCGG 5 cut(s) 174, 285, 716, 727, 801
HgaI GACGC 4 cut(s) 136, 156, 184, 268
HhaI GCGC 2 cut(s) 85, 230
Hin1I GRCGYC 4 cut(s) 167, 195, 228, 260
Hin1II CATG 3 cut(s) 273, 620, 763
Hin6I GCGC 2 cut(s) 83, 228
HinP1I GCGC 2 cut(s) 83, 228
HinfI GANTC 7 cut(s) 183, 233, 320, 359, 531, 695, 779
HpaII CCGG 5 cut(s) 174, 285, 716, 727, 801
Hpy166II GTNNAC 2 cut(s) 21, 680
Hpy188I TCNGA 4 cut(s) 108, 207, 546, 790
Hpy188III TCNNGA 3 cut(s) 180, 461, 535
Hpy8I GTNNAC 2 cut(s) 21, 680
Hpy99I CGWCG 6 cut(s) 44, 47, 59, 172, 262, 311
HpyAV CCTTC 4 cut(s) 108, 439, 669, 748
HpyCH4IV ACGT 2 cut(s) 45, 676
HpyCH4V TGCA 3 cut(s) 249, 553, 575
HpyF10VI GCNNNNNNNGC 6 cut(s) 67, 76, 89, 225, 285, 708
HpyF3I CTNAG 2 cut(s) 131, 414
HpySE526I ACGT 2 cut(s) 45, 676
Hsp92I GRCGYC 4 cut(s) 167, 195, 228, 260
Hsp92II CATG 3 cut(s) 273, 620, 763
HspAI GCGC 2 cut(s) 83, 228
KasI GGCGCC 1 cut(s) 227
Kzo9I GATC 2 cut(s) 335, 541
LmnI GCTCC 4 cut(s) 161, 273, 499, 587
Lsp1109I GCAGC 4 cut(s) 54, 261, 314, 732
LweI GCATC 3 cut(s) 138, 211, 236
MaeI CTAG 3 cut(s) 243, 324, 636
MaeII ACGT 2 cut(s) 45, 676
MalI GATC 2 cut(s) 337, 543
MbiI CCGCTC 2 cut(s) 29, 276
MboI GATC 2 cut(s) 335, 541
MboII GAAGA 3 cut(s) 329, 415, 624
MflI RGATCY 1 cut(s) 335
MluCI AATT 2 cut(s) 565, 733
Mly113I GGCGCC 1 cut(s) 228
MlyI GAGTC 1 cut(s) 329
MnlI CCTC 8 cut(s) 138, 201, 273, 381, 418, 421, 681, 769
MroXI GAANNNNTTC 1 cut(s) 628
MseI TTAA 2 cut(s) 525, 755
MspI CCGG 5 cut(s) 174, 285, 716, 727, 801
MspR9I CCNGG 4 cut(s) 727, 728, 801, 802
Mva1269I GAATGC 1 cut(s) 553
MvnI CGCG 1 cut(s) 688
MwoI GCNNNNNNNGC 6 cut(s) 67, 76, 89, 225, 285, 708
NarI GGCGCC 1 cut(s) 228
NciI CCSGG 4 cut(s) 727, 728, 801, 802
NdeI CATATG 2 cut(s) 355, 409
NdeII GATC 2 cut(s) 335, 541
NlaIII CATG 3 cut(s) 273, 620, 763
NlaIV GGNNCC 7 cut(s) 96, 178, 229, 283, 382, 765, 787
NspV TTCGAA 1 cut(s) 315
PcsI WCGNNNNNNNCGW 3 cut(s) 29, 51, 192
PctI GAATGC 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 628
PfeI GAWTC 6 cut(s) 183, 233, 359, 531, 695, 779
PleI GAGTC 1 cut(s) 328
PluTI GGCGCC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 328
PspN4I GGNNCC 7 cut(s) 96, 178, 229, 283, 382, 765, 787
PspPI GGNCC 2 cut(s) 95, 724
PsuI RGATCY 1 cut(s) 335
SaqAI TTAA 2 cut(s) 525, 755
Sau3AI GATC 2 cut(s) 335, 541
Sau96I GGNCC 2 cut(s) 95, 724
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 4 cut(s) 727, 728, 801, 802
SfaNI GCATC 3 cut(s) 138, 211, 236
SfoI GGCGCC 1 cut(s) 229
SfuI TTCGAA 1 cut(s) 315
SmaI CCCGGG 2 cut(s) 728, 802
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 2 cut(s) 565, 733
SspDI GGCGCC 1 cut(s) 227
SspMI CTAG 3 cut(s) 243, 324, 636
StyD4I CCNGG 4 cut(s) 725, 726, 799, 800
StyI CCWWGG 1 cut(s) 339
TaiI ACGT 2 cut(s) 48, 679
TaqI TCGA 4 cut(s) 57, 186, 315, 599
TaqII GACCGA 1 cut(s) 53
TasI AATT 2 cut(s) 565, 733
TauI GCSGC 8 cut(s) 32, 73, 92, 167, 195, 219, 279, 282
TfiI GAWTC 6 cut(s) 183, 233, 359, 531, 695, 779
Tru1I TTAA 2 cut(s) 525, 755
Tru9I TTAA 2 cut(s) 525, 755
TscAI CASTG 2 cut(s) 382, 649
TseI GCWGC 4 cut(s) 67, 249, 327, 745
TspDTI ATGAA 1 cut(s) 372
TspGWI ACGGA 1 cut(s) 600
TspMI CCCGGG 2 cut(s) 726, 800
TspRI CASTG 2 cut(s) 382, 649
XapI RAATTY 1 cut(s) 565
XmaI CCCGGG 2 cut(s) 726, 800
XmnI GAANNNNTTC 1 cut(s) 628
XspI CTAG 3 cut(s) 243, 324, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.