Rh6CG394100

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012225
Physical Location & Seq
Forward (+)
58195625 .. 58199763
4139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG394100.1

Sequence Viewer

Length: 654 bp
ATGATGGTGGCGAAGGACGAGTGGACGAGTGCGGCGATGACCGACGACGTCCTCGTCGTCGAGCTACTGCTGCGGCTGAAGGAGTCGCGAGCGGCGTCATCCTCGTCGTCTTCGCTTCTCCACTATCCCTTCACGGTCAAGTCCGTGATTCCGCGGTGGGGTCTCCGGCTGCCACGCAGCAAGGCGTCGGCGTCGGCGGCGTCTTCCTCGAGATGCGACGCCGTTTGCCGGAGGAACAACAGTAAGAAGGACGACTCGACTAGATGCAGCCCCACCACGCCGCTTTCCTGGAGCGGCGGCAGCGGCAGCGGCGGCGGCTCGCCTTCCGGCACTGCCGATGGATTCGAAGAGTCCAGCCGCCCCAGATCCAAGGGTACTGCTACATATGAATCCACTAGCACCACCAATGGAATCAAGAGGGCTAGGAAGAAGAAGTCATATGATGAGCTTAAAGAAGAGGAAACTTCGTTGTTGAAAGAAAGGACCAATTTGAGAAAGGAAATAGCGACATTACAGGCTACTTTTAAAGAGCAAAGAGCCAAAAATGAGCACTTAAAGAGAGCGAAGGTGATTCTGCTGTTCTTTATATATCTTTTACTATTTATATCTTCAGGTTCAAGCCCTTTTGTCTTTCATATATGTCAAGGTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

23.81

Weight (kDa)

9.79

Isoelectric Point (pI)

57.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32030 AT4G32030
fragaria_vesca FvH4_2g28270 FvH4_2g28270
malus_domestica MD08G1154000.v1.1 MD15G1131300.v1.1
prunus_persica Prupe.1G486600_v2.0.a1
pyrus_communis pycom08g13350 pycom15g11840
rosa_chinensis RchiOBHm_Chr6g0297181
rosa_laevigata RLG00000011624
rosa_multiflora Rmu_sc0001574.1_g000005
rosa_roxburghii Rroxscaffold_7G00170810
rosa_rugosa Rorug06G0269600
rosa_samantha Rh6AG380700 Rh6BG388800 Rh6CG394100 Rh6DG380700
rosa_wichuraiana Rw6G033150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 53
AatII GACGTC 1 cut(s) 51
AccBSI CCGCTC 2 cut(s) 92, 294
AccII CGCG 2 cut(s) 88, 154
AclWI GGATC 1 cut(s) 360
AcuI CTGAAG 2 cut(s) 98, 594
AcyI GRCGYC 6 cut(s) 48, 95, 185, 191, 200, 219
AfaI GTAC 1 cut(s) 376
AfiI CCNNNNNNNGG 2 cut(s) 158, 228
AgsI TTSAA 2 cut(s) 475, 618
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 2 cut(s) 64, 448
AluI AGCT 2 cut(s) 64, 448
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 1 cut(s) 360
Ama87I CYCGRG 1 cut(s) 208
ApeKI GCWGC 6 cut(s) 70, 169, 177, 267, 300, 306
AspS9I GGNCC 1 cut(s) 483
AsuHPI GGTGA 1 cut(s) 580
AsuII TTCGAA 1 cut(s) 345
AvaI CYCGRG 1 cut(s) 208
AvaII GGWCC 1 cut(s) 483
BbsI GAAGAC 2 cut(s) 102, 195
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 6 cut(s) 57, 156, 189, 279, 312, 318
BccI CCATC 1 cut(s) 332
BceAI ACGGC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 3 cut(s) 261, 396, 423
Bme1390I CCNGG 1 cut(s) 289
Bme18I GGWCC 1 cut(s) 483
BmeT110I CYCGRG 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 483
BmrFI CCNGG 1 cut(s) 289
BmsI GCATC 2 cut(s) 203, 254
BpiI GAAGAC 2 cut(s) 102, 195
BpmI CTGGAG 1 cut(s) 310
Bpu14I TTCGAA 1 cut(s) 345
BsaHI GRCGYC 6 cut(s) 48, 95, 185, 191, 200, 219
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 2 cut(s) 152, 369
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 228
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 2 cut(s) 152, 369
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 2 cut(s) 158, 228
BseXI GCAGC 6 cut(s) 57, 156, 189, 279, 312, 318
Bsh1236I CGCG 2 cut(s) 88, 154
BsiHKAI GWGCWC 1 cut(s) 552
BsiHKCI CYCGRG 1 cut(s) 208
BsiSI CCGG 3 cut(s) 166, 229, 327
BslI CCNNNNNNNGG 2 cut(s) 158, 228
BsmAI GTCTC 1 cut(s) 167
Bso31I GGTCTC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 208
Bsp119I TTCGAA 1 cut(s) 345
Bsp1286I GDGCHC 1 cut(s) 552
Bsp143I GATC 1 cut(s) 365
Bsp68I TCGCGA 1 cut(s) 88
BspFNI CGCG 2 cut(s) 88, 154
BspPI GGATC 1 cut(s) 360
BspT104I TTCGAA 1 cut(s) 345
BspTNI GGTCTC 1 cut(s) 167
BsrBI CCGCTC 2 cut(s) 92, 294
BssECI CCNNGG 2 cut(s) 152, 369
BssMI GATC 1 cut(s) 365
BssNI GRCGYC 6 cut(s) 48, 95, 185, 191, 200, 219
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 2 cut(s) 136, 242
Bst6I CTCTTC 2 cut(s) 342, 450
BstACI GRCGYC 6 cut(s) 48, 95, 185, 191, 200, 219
BstBI TTCGAA 1 cut(s) 345
BstC8I GCNNGC 2 cut(s) 90, 320
BstDSI CCRYGG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 98
BstFNI CGCG 2 cut(s) 88, 154
BstKTI GATC 1 cut(s) 368
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 1 cut(s) 365
BstMWI GCNNNNNNNGC 8 cut(s) 70, 197, 300, 303, 306, 309, 312, 315
BstNI CCWGG 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 287
BstUI CGCG 2 cut(s) 88, 154
BstV1I GCAGC 6 cut(s) 57, 156, 189, 279, 312, 318
BstV2I GAAGAC 2 cut(s) 102, 195
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BtgI CCRYGG 1 cut(s) 152
BtgZI GCGATG 1 cut(s) 50
BtsCI GGATG 1 cut(s) 98
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 330
BtuMI TCGCGA 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 90, 320
Cfr13I GGNCC 1 cut(s) 483
Cfr42I CCGCGG 1 cut(s) 155
CseI GACGC 5 cut(s) 84, 174, 180, 189, 227
Csp6I GTAC 1 cut(s) 375
CviQI GTAC 1 cut(s) 375
DpnI GATC 1 cut(s) 367
DpnII GATC 1 cut(s) 365
DraI TTTAAA 1 cut(s) 526
DrdI GACNNNNNNGTC 1 cut(s) 53
DseDI GACNNNNNNGTC 1 cut(s) 53
Eam1104I CTCTTC 2 cut(s) 342, 450
EarI CTCTTC 2 cut(s) 342, 450
Eco130I CCWWGG 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 483
Eco57I CTGAAG 2 cut(s) 98, 594
Eco88I CYCGRG 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
FauNDI CATATG 2 cut(s) 385, 439
FokI GGATG 1 cut(s) 85
FspBI CTAG 3 cut(s) 261, 396, 423
GsuI CTGGAG 1 cut(s) 310
HapII CCGG 3 cut(s) 166, 229, 327
HgaI GACGC 5 cut(s) 84, 174, 180, 189, 227
Hin1I GRCGYC 6 cut(s) 48, 95, 185, 191, 200, 219
HinfI GANTC 8 cut(s) 83, 148, 254, 342, 350, 389, 411, 571
HpaII CCGG 3 cut(s) 166, 229, 327
HphI GGTGA 1 cut(s) 580
Hpy166II GTNNAC 1 cut(s) 24
Hpy188III TCNNGA 3 cut(s) 87, 210, 415
Hpy8I GTNNAC 1 cut(s) 24
Hpy99I CGWCG 8 cut(s) 47, 50, 59, 62, 109, 190, 196, 221
HpyAV CCTTC 6 cut(s) 7, 73, 139, 241, 333, 559
HpyCH4III ACNGT 2 cut(s) 136, 242
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 1 cut(s) 267
HpyF10VI GCNNNNNNNGC 8 cut(s) 70, 197, 300, 303, 306, 309, 312, 315
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 6 cut(s) 48, 95, 185, 191, 200, 219
KspI CCGCGG 1 cut(s) 155
Kzo9I GATC 1 cut(s) 365
LmnI GCTCC 1 cut(s) 291
LpnPI CCDG 9 cut(s) 179, 242, 274, 301, 340, 367, 376, 500, 597
Lsp1109I GCAGC 6 cut(s) 57, 156, 189, 279, 312, 318
LweI GCATC 2 cut(s) 203, 254
MaeI CTAG 3 cut(s) 261, 396, 423
MaeII ACGT 1 cut(s) 48
MalI GATC 1 cut(s) 367
MbiI CCGCTC 2 cut(s) 92, 294
MboI GATC 1 cut(s) 365
MboII GAAGA 7 cut(s) 102, 195, 359, 439, 442, 467, 600
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 1 cut(s) 552
MluCI AATT 1 cut(s) 487
MlyI GAGTC 3 cut(s) 92, 248, 359
MnlI CCTC 6 cut(s) 62, 112, 217, 225, 411, 451
MseI TTAA 3 cut(s) 450, 525, 554
MspA1I CMGCKG 3 cut(s) 154, 303, 309
MspI CCGG 3 cut(s) 166, 229, 327
MspR9I CCNGG 1 cut(s) 289
MvaI CCWGG 1 cut(s) 289
MvnI CGCG 2 cut(s) 88, 154
MwoI GCNNNNNNNGC 8 cut(s) 70, 197, 300, 303, 306, 309, 312, 315
NdeI CATATG 2 cut(s) 385, 439
NdeII GATC 1 cut(s) 365
NruI TCGCGA 1 cut(s) 88
NspV TTCGAA 1 cut(s) 345
PaeR7I CTCGAG 1 cut(s) 208
PcsI WCGNNNNNNNCGW 4 cut(s) 32, 51, 54, 92
PfeI GAWTC 5 cut(s) 148, 342, 389, 411, 571
PflFI GACNNNGTC 1 cut(s) 47
PfoI TCCNGGA 1 cut(s) 287
PleI GAGTC 3 cut(s) 91, 248, 358
PpsI GAGTC 3 cut(s) 91, 248, 358
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspPI GGNCC 1 cut(s) 483
PsuI RGATCY 1 cut(s) 365
PsyI GACNNNGTC 1 cut(s) 47
RruI TCGCGA 1 cut(s) 88
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
SacII CCGCGG 1 cut(s) 155
SaqAI TTAA 3 cut(s) 450, 525, 554
Sau3AI GATC 1 cut(s) 365
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 3 cut(s) 92, 248, 359
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 1 cut(s) 552
SetI ASST 6 cut(s) 51, 66, 450, 570, 616, 649
SfaNI GCATC 2 cut(s) 203, 254
Sfr274I CTCGAG 1 cut(s) 208
Sfr303I CCGCGG 1 cut(s) 155
SfuI TTCGAA 1 cut(s) 345
SgrBI CCGCGG 1 cut(s) 155
SinI GGWCC 1 cut(s) 483
SlaI CTCGAG 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 1 cut(s) 487
SspMI CTAG 3 cut(s) 261, 396, 423
StyD4I CCNGG 1 cut(s) 287
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 2 cut(s) 136, 242
TaiI ACGT 1 cut(s) 51
TaqI TCGA 4 cut(s) 60, 209, 257, 345
TaqII GACCGA 1 cut(s) 56
TasI AATT 1 cut(s) 487
TfiI GAWTC 5 cut(s) 148, 342, 389, 411, 571
Tru1I TTAA 3 cut(s) 450, 525, 554
Tru9I TTAA 3 cut(s) 450, 525, 554
TscAI CASTG 1 cut(s) 337
TseI GCWGC 6 cut(s) 70, 169, 177, 267, 300, 306
TspDTI ATGAA 2 cut(s) 402, 623
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 1 cut(s) 337
Tth111I GACNNNGTC 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 483
XhoI CTCGAG 1 cut(s) 208
XspI CTAG 3 cut(s) 261, 396, 423
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.